Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 32189394
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|32189394 mitochondrial ATP synthase beta subunit precursor
[Homo sapiens]
(529 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|32189394 mitochondrial ATP synthase beta subunit precursor [H... 1025 0.0
gi|19913426 ATPase, H+ transporting, lysosomal 56/58kDa, V1 subu... 122 1e-27
gi|19913428 vacuolar H+ATPase B2 [Homo sapiens] 117 2e-26
gi|19913424 ATPase, H+ transporting, lysosomal V1 subunit A [Hom... 115 1e-25
gi|50345984 ATP synthase, H+ transporting, mitochondrial F1 comp... 103 3e-22
gi|4757810 ATP synthase, H+ transporting, mitochondrial F1 compl... 103 3e-22
gi|32401433 G protein-coupled receptor 142 [Homo sapiens] 36 0.099
gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo sap... 33 0.49
gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens] 32 1.4
gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo sap... 31 2.5
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 31 2.5
gi|6912338 dynein, axonemal, intermediate chain 1 [Homo sapiens] 30 5.5
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 29 9.3
gi|116014339 olfactomedin-like 2A [Homo sapiens] 29 9.3
gi|163965366 nascent polypeptide-associated complex alpha subuni... 29 9.3
>gi|32189394 mitochondrial ATP synthase beta subunit precursor [Homo
sapiens]
Length = 529
Score = 1025 bits (2650), Expect = 0.0
Identities = 529/529 (100%), Positives = 529/529 (100%)
Query: 1 MLGFVGRVAAAPASGALRRLTPSASLPPAQLLLRAAPTAVHPVRDYAAQTSPSPKAGAAT 60
MLGFVGRVAAAPASGALRRLTPSASLPPAQLLLRAAPTAVHPVRDYAAQTSPSPKAGAAT
Sbjct: 1 MLGFVGRVAAAPASGALRRLTPSASLPPAQLLLRAAPTAVHPVRDYAAQTSPSPKAGAAT 60
Query: 61 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 120
GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV
Sbjct: 61 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 120
Query: 121 RGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFMEMSVEQ 180
RGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFMEMSVEQ
Sbjct: 121 RGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFMEMSVEQ 180
Query: 181 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 240
EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT
Sbjct: 181 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 240
Query: 241 REGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQD 300
REGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQD
Sbjct: 241 REGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQD 300
Query: 301 VLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAI 360
VLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAI
Sbjct: 301 VLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAI 360
Query: 361 YVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDV 420
YVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDV
Sbjct: 361 YVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDV 420
Query: 421 ARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHMGK 480
ARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHMGK
Sbjct: 421 ARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHMGK 480
Query: 481 LVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAEEHSS 529
LVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAEEHSS
Sbjct: 481 LVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAEEHSS 529
>gi|19913426 ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit
B1 [Homo sapiens]
Length = 513
Score = 122 bits (305), Expect = 1e-27
Identities = 112/428 (26%), Positives = 195/428 (45%), Gaps = 34/428 (7%)
Query: 96 VLEVAQHLGESTVRTIAMDGTEGLVRGQKVLD-SGAPIKIPVGPETLGRIMNVIGEPIDE 154
VLEVA G + + +GT G+ + + +G ++ PV + LGR+ N G+PID+
Sbjct: 80 VLEVA---GTKAIVQV-FEGTSGIDARKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 135
Query: 155 RGPIKTKQFAPIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 214
+ + F I+ + +E++ TGI +D++ A+G KI +F AG+
Sbjct: 136 GPVVMAEDFLDINGQPINPHSRIYPEEMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNE 195
Query: 215 LIMELINNV-----AKAHGGYS------VFAGVGERTREGNDLYHEMIESGVINLKDATS 263
+ ++ +KA Y VFA +G + ++G +
Sbjct: 196 IAAQICRQAGLVKKSKAVLDYHDDNFAIVFAAMGVNMETARFFKSDFEQNGTM------G 249
Query: 264 KVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG 323
V L N+P R LT AE+ Q + VL+ + ++ + +A EVSA
Sbjct: 250 NVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAARE 309
Query: 324 RIPSAVGYQPTLATDMGTMQERI--TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDA 381
+P G+ + TD+ T+ ER + GSIT + + +P DD+T P P T +
Sbjct: 310 EVPGRRGFPGYMYTDLATIYERAGRVEGRGGSITQIPILTMPNDDITHPIPDLTGFITEG 369
Query: 382 TTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----VGSEHYDVARGVQKILQDYKSLQDI 437
+ R + IYP ++ L S SR+M I +H DV+ + K +Q +
Sbjct: 370 QIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYACYAIGKDVQAM 429
Query: 438 IAILGMDELSEEDKLTVSRARKIQR-FLSQ-PFQVAEVFTG-HMG-KLVPL--KETIKGF 491
A++G + L+ ED L + +K ++ F++Q P++ VF +G KL+ + KE +K
Sbjct: 430 KAVVGEEALTSEDLLYLEFLQKFEKNFINQGPYENRSVFESLDLGWKLLRIFPKEMLKRI 489
Query: 492 QQILAGEY 499
Q + E+
Sbjct: 490 PQAVIDEF 497
>gi|19913428 vacuolar H+ATPase B2 [Homo sapiens]
Length = 511
Score = 117 bits (294), Expect = 2e-26
Identities = 118/481 (24%), Positives = 209/481 (43%), Gaps = 35/481 (7%)
Query: 15 GALRRLTPSASLPPAQLLLRAAPTAVHPVRDYAAQTSPSPKAGAATGRIVAVIGAVVDVQ 74
G + P +P + A A+ R+Y +Q + K + + ++ V +
Sbjct: 8 GIVNGAAPELPVPTGGPAVGAREQALAVSRNYLSQPRLTYKTVSGVNGPLVILDHVKFPR 67
Query: 75 FDEGLPPILNALEVQG-RETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLD-SGAPI 132
+ E I++ G + + VLEV+ G V + +GT G+ + + +G +
Sbjct: 68 YAE----IVHLTLPDGTKRSGQVLEVS---GSKAVVQV-FEGTSGIDAKKTSCEFTGDIL 119
Query: 133 KIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFMEMSVEQEILVTGIKVVDL 192
+ PV + LGR+ N G+PID + + F I + +E++ TGI +D
Sbjct: 120 RTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDG 179
Query: 193 LAPYAKGGKIGLFGGAGVGKTVLIMELINNV-----AKAHGGYS------VFAGVGERTR 241
+ A+G KI +F AG+ + ++ +K YS VFA +G
Sbjct: 180 MNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKDVVDYSEENFAIVFAAMGVNME 239
Query: 242 EGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDV 301
+ E+G ++ V L N+P R LT AE+ Q + V
Sbjct: 240 TARFFKSDFEENGSMD------NVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHV 293
Query: 302 LLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQA 359
L+ + ++ + +A EVSA +P G+ + TD+ T+ ER + GSIT +
Sbjct: 294 LVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPI 353
Query: 360 IYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----VGS 415
+ +P DD+T P P T + + R + IYP ++ L S SR+M I
Sbjct: 354 LTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRK 413
Query: 416 EHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQR-FLSQ-PFQVAEV 473
+H DV+ + K +Q + A++G + L+ +D L + +K +R F++Q P++ V
Sbjct: 414 DHADVSNQLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTV 473
Query: 474 F 474
F
Sbjct: 474 F 474
>gi|19913424 ATPase, H+ transporting, lysosomal V1 subunit A [Homo
sapiens]
Length = 617
Score = 115 bits (287), Expect = 1e-25
Identities = 88/303 (29%), Positives = 147/303 (48%), Gaps = 26/303 (8%)
Query: 183 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTRE 242
L+TG +V+D L P +GG + G G GKTV+ L ++ ++ G GER E
Sbjct: 227 LLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSK---YSNSDVIIYVGCGERGNE 283
Query: 243 GNDLYHEMIESGVI---NLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQ 299
+++ + E + ++ + ALV N P AR TG+T++EYFRD G
Sbjct: 284 MSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDM-GY 342
Query: 300 DVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK-------KG 352
V + D+ R+ +A E+S L +P+ GY L + + ER K +G
Sbjct: 343 HVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPEREG 402
Query: 353 SITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI 412
S++ V A+ P D +DP + T + L + +A+ +P+V+ L S S+ M
Sbjct: 403 SVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMR--- 459
Query: 413 VGSEHYD--------VARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQ-RF 463
E+YD + ++ILQ+ + L +I+ ++G L+E DK+T+ A+ I+ F
Sbjct: 460 ALDEYYDKHFTEFVPLRTKAKEILQEEEDLAEIVQLVGKASLAETDKITLEVAKLIKDDF 519
Query: 464 LSQ 466
L Q
Sbjct: 520 LQQ 522
Score = 31.2 bits (69), Expect = 2.5
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 105 ESTVRTIAM-DGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDE 154
E + TI + + T G+ G VL +G P+ + +GP +G I + I P+ +
Sbjct: 58 EGDMATIQVYEETSGVSVGDPVLRTGKPLSVELGPGIMGAIFDGIQRPLSD 108
>gi|50345984 ATP synthase, H+ transporting, mitochondrial F1
complex, alpha subunit precursor [Homo sapiens]
Length = 553
Score = 103 bits (258), Expect = 3e-22
Identities = 100/401 (24%), Positives = 174/401 (43%), Gaps = 35/401 (8%)
Query: 111 IAMDGTEGLVR-GQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAE 169
+ + G + L++ G V +GA + +PVG E LGR+++ +G ID +GPI +K + +
Sbjct: 116 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLK 175
Query: 170 APEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 229
AP + +E + TGIK VD L P +G + + G GKT + ++ I N + + G
Sbjct: 176 APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 235
Query: 230 -------YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARV 282
Y ++ +G++ L + ++ DA +V ++ +
Sbjct: 236 SDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------DAMKYTIVVSATASDAAPLQYLA 289
Query: 283 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTM 342
+G ++ EYFRD G+ L+ D++ + A ++S LL R P Y + +
Sbjct: 290 PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 348
Query: 343 QERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 398
ER GS+T++ I A D++ P + D L + GI PA+
Sbjct: 349 LERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 408
Query: 399 DPLDSTSRIMDPNIVGSEHYDVARGVQKI-LQDYKSLQDIIAILGMDELSEEDKLTVSRA 457
+ S SR+ + + G K+ L Y+ + A G D L + +SR
Sbjct: 409 NVGLSVSRV--GSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLSRG 464
Query: 458 RKIQRFLSQ--------PFQVAEVFT---GHMGKLVPLKET 487
++ L Q QVA ++ G++ KL P K T
Sbjct: 465 VRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 505
>gi|4757810 ATP synthase, H+ transporting, mitochondrial F1 complex,
alpha subunit precursor [Homo sapiens]
Length = 553
Score = 103 bits (258), Expect = 3e-22
Identities = 100/401 (24%), Positives = 174/401 (43%), Gaps = 35/401 (8%)
Query: 111 IAMDGTEGLVR-GQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAE 169
+ + G + L++ G V +GA + +PVG E LGR+++ +G ID +GPI +K + +
Sbjct: 116 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLK 175
Query: 170 APEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 229
AP + +E + TGIK VD L P +G + + G GKT + ++ I N + + G
Sbjct: 176 APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 235
Query: 230 -------YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARV 282
Y ++ +G++ L + ++ DA +V ++ +
Sbjct: 236 SDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------DAMKYTIVVSATASDAAPLQYLA 289
Query: 283 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTM 342
+G ++ EYFRD G+ L+ D++ + A ++S LL R P Y + +
Sbjct: 290 PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 348
Query: 343 QERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 398
ER GS+T++ I A D++ P + D L + GI PA+
Sbjct: 349 LERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 408
Query: 399 DPLDSTSRIMDPNIVGSEHYDVARGVQKI-LQDYKSLQDIIAILGMDELSEEDKLTVSRA 457
+ S SR+ + + G K+ L Y+ + A G D L + +SR
Sbjct: 409 NVGLSVSRV--GSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLSRG 464
Query: 458 RKIQRFLSQ--------PFQVAEVFT---GHMGKLVPLKET 487
++ L Q QVA ++ G++ KL P K T
Sbjct: 465 VRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 505
>gi|32401433 G protein-coupled receptor 142 [Homo sapiens]
Length = 462
Score = 35.8 bits (81), Expect = 0.099
Identities = 20/37 (54%), Positives = 24/37 (64%)
Query: 425 QKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQ 461
QKI SLQDI A+LG + +EEDK VS A+K Q
Sbjct: 10 QKIQWVPTSLQDITAVLGTEAYTEEDKSMVSHAQKSQ 46
>gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo
sapiens]
Length = 254
Score = 33.5 bits (75), Expect = 0.49
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 9 AAAPASGALRRLTPSASLPPAQLLLRAAPTAVHPVRDYAAQTSPSPKAGAATGRIVAVIG 68
AA+PA+ A + P+A+ P A L A+PTA P A +P AA A +
Sbjct: 113 AASPAAVAPAAVCPAAASPSAASLCAASPTAAAPAAASPAAAAPLAVNPAAAAPAAACVQ 172
Query: 69 AVVD 72
+V +
Sbjct: 173 SVAE 176
Score = 30.4 bits (67), Expect = 4.2
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 9 AAAPASGALRRLTPSASLP-----PAQLLLRAAPTAVHPVRDYAAQTSPSPKAGAATGRI 63
AA P++ +LR P A P PA L A+P AV P A SPS + A
Sbjct: 83 AAGPSAASLRAANPLAVAPAAVRRPAATLGAASPAAVAPAAVCPAAASPSAASLCAASPT 142
Query: 64 VAVIGA 69
A A
Sbjct: 143 AAAPAA 148
>gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens]
Length = 547
Score = 32.0 bits (71), Expect = 1.4
Identities = 25/58 (43%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 6 GRVAAAPASGALRRLTPSASLPPAQLL--LRAAPTAVHPVRDYAAQTSPSPKAGAATG 61
G V APA+GA R L P + P QLL + +PT PV AA P GAA G
Sbjct: 47 GGVGCAPAAGAGRLLQPIRATVPYQLLRGSQHSPTR-PPVAAAAASLGSLPGPGAARG 103
>gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo
sapiens]
Length = 288
Score = 31.2 bits (69), Expect = 2.5
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 9 AAAPASGALRRLTPSASLPPAQLLLRAAPTAVHPVRDYAAQTSPSPKAGAATGRIVAVIG 68
AA P + AL + P+A+ P A L A+P A P A +P+ A G A +
Sbjct: 153 AAGPPAAALAAVYPAAADPSAASLCAASPLAAVPAAASPAAVAPAAVCPGAAGPSAASLC 212
Query: 69 A 69
A
Sbjct: 213 A 213
Score = 30.4 bits (67), Expect = 4.2
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 9 AAAPASGALRRLTPSASLPPAQLLLRAAPTAVHPVRDYAAQTSPSPKAGAATGRIVAVIG 68
AA P + A + P+A+ P A L A+P A P AA P+ AG + AV
Sbjct: 109 AAGPPAAAPAAVCPAAADPSAASLCAASPPAAVPAAVPAAVRPPA--AGPPAAALAAVYP 166
Query: 69 AVVD 72
A D
Sbjct: 167 AAAD 170
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 31.2 bits (69), Expect = 2.5
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 13/138 (9%)
Query: 8 VAAAPASGALRRLTPSASLPPAQLLLRAAP---TAVHPVRDYAAQTSPSPKAGAATGRIV 64
+AAA A+ A +A+ P L AAP A P AA +P+P A A
Sbjct: 499 IAAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAP 558
Query: 65 AVIGAVVDVQFDEGLPPILN------ALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEG 118
A + + P++ A + + ++ + G + ++ I EG
Sbjct: 559 AAAASAAPSHSQKPSVPLIQASRPCPAAQPPTKFIKIAPAIQLRTGSTGLKAI---NVEG 615
Query: 119 LVRGQKVLDSG-APIKIP 135
V+G + L S P++ P
Sbjct: 616 PVQGAQALGSSFKPVQAP 633
>gi|6912338 dynein, axonemal, intermediate chain 1 [Homo sapiens]
Length = 699
Score = 30.0 bits (66), Expect = 5.5
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 6 GRVAAAPASGALRRLTPSASLPPAQ-----------LLLRAAPTAVHPVRDYAAQTSPSP 54
G PA+GA ++T + P Q RA+ T +PVRD QT P P
Sbjct: 158 GSQTDVPAAGAAEKVTEEELMTPKQPKERKLTNQFNFSERASQTYNNPVRDRECQTEPPP 217
Query: 55 KAG-AATGRIVAVIGAVVD 72
+ +AT + A V+
Sbjct: 218 RTNFSATANQWEIYDAYVE 236
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
sapiens]
Length = 1336
Score = 29.3 bits (64), Expect = 9.3
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 5 VGRVAAAPASGALRRLTPSASLPPAQ------LLLRAAPTAVHPVRDYAAQTS-PSPKAG 57
+G AAP A R L+P A+ PP + ++R A P + S P+P A
Sbjct: 977 LGEARAAPRGAAGRPLSPPAAQPPQKPPPSYFAIVRDKEPAEPPAGAFPGFPSPPAPPAA 1036
Query: 58 AATGRIVAVIGAVVDVQFDEGLPP 81
AAT AV + + F++ PP
Sbjct: 1037 AAT----AVGPPLCRLAFEDESPP 1056
>gi|116014339 olfactomedin-like 2A [Homo sapiens]
Length = 652
Score = 29.3 bits (64), Expect = 9.3
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 414 GSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARK 459
GS+ D ARG K + Y S+Q A G+ + +E L V + RK
Sbjct: 219 GSKAQDTARGKGKDISKYGSVQKSFADRGLPKPPKEKLLQVEKLRK 264
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 29.3 bits (64), Expect = 9.3
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 12/45 (26%)
Query: 21 TPSASLP-----PAQLLLRAAPTAVHPVRDYAAQTSPSPKAGAAT 60
TP+A+LP PA L+ APT A T PSPK G AT
Sbjct: 1059 TPAATLPSPKGGPATPSLKGAPTP-------PAATPPSPKGGPAT 1096
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,431,625
Number of Sequences: 37866
Number of extensions: 822311
Number of successful extensions: 2522
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2452
Number of HSP's gapped (non-prelim): 61
length of query: 529
length of database: 18,247,518
effective HSP length: 107
effective length of query: 422
effective length of database: 14,195,856
effective search space: 5990651232
effective search space used: 5990651232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.