Guide to the Human Genome
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Name: ATP6V1A Sequence: fasta or formatted (617aa) NCBI GI: 19913424
Description:

ATPase, H+ transporting, lysosomal V1 subunit A

Referenced in:

Lysosomes and Related Organelles

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         42           2
 C cysteine            1.1          7           1
 D aspartate           6.2         38           2
 E glutamate           7.0         43           3
 F phenylalanine       3.6         22           1
 G glycine             8.1         50           2
 H histidine           1.5          9           1
 I isoleucine          6.2         38           2
 K lysine              5.7         35           2
 L leucine             8.1         50           2
 M methionine          3.6         22           2
 N asparagine          2.6         16           1
 P proline             5.0         31           2
 Q glutamine           2.9         18           2
 R arginine            5.2         32           2
 S serine              7.9         49           2
 T threonine           5.5         34           2
 V valine              8.1         50           2
 W tryptophan          1.0          6           1
 Y tyrosine            4.1         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATPase, H+ transporting, lysosomal V1 subunit A [Hom... 
ATP5B                 0.075   mitochondrial ATP synthase beta subunit precursor [H...
ATP6V1B2              0.049   vacuolar H+ATPase B2 
ATP6V1B1              0.047   ATPase, H+ transporting, lysosomal 56/58kDa, V1 subu...
ATP5A1                0.036   ATP synthase, H+ transporting, mitochondrial F1 comp...
ATP5A1                0.036   ATP synthase, H+ transporting, mitochondrial F1 compl...
MIOX                  0.007   myo-inositol oxygenase 
ACACB                 0.007   acetyl-Coenzyme A carboxylase beta 
TTN                   0.005   titin isoform N2-A 
TTN                   0.005   titin isoform novex-2 
TTN                   0.005   titin isoform novex-1 
TTN                   0.005   titin isoform N2-B 
EMILIN2               0.004   elastin microfibril interfacer 2 
EPS8L1                0.004   epidermal growth factor receptor pathway substrate ...
EPS8L1                0.004   epidermal growth factor receptor pathway substrate ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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