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Search of human proteins with 31563402
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31563402 chemokine-like factor superfamily 1 isoform 5 [Homo
sapiens]
(61 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31563402 chemokine-like factor superfamily 1 isoform 5 [Homo ... 120 2e-28
gi|31563398 chemokine-like factor superfamily 1 isoform 4 [Homo ... 119 7e-28
gi|31563396 chemokine-like factor superfamily 1 isoform 3 [Homo ... 112 6e-26
gi|31563394 chemokine-like factor superfamily 1 isoform 2 [Homo ... 96 5e-21
gi|31563392 chemokine-like factor superfamily 1 isoform 1 [Homo ... 94 2e-20
gi|148743778 chemokine-like factor superfamily 1 isoform 14 [Hom... 69 8e-13
gi|148743783 chemokine-like factor superfamily 1 isoform 13 [Hom... 67 3e-12
gi|31563424 chemokine-like factor superfamily 1 isoform 12 [Homo... 58 1e-09
gi|93141024 chemokine-like factor isoform e [Homo sapiens] 28 1.2
gi|8393581 chemokine-like factor isoform a [Homo sapiens] 28 1.2
gi|32307154 chemokine-like factor isoform b [Homo sapiens] 28 1.2
gi|116284390 glutamate receptor, ionotrophic, AMPA 4 isoform 3 p... 27 4.6
gi|164419739 glutamate receptor, ionotrophic, AMPA 4 isoform 3 p... 27 4.6
gi|164419736 glutamate receptor, ionotrophic, AMPA 4 isoform 2 p... 27 4.6
gi|164419734 glutamate receptor, ionotrophic, AMPA 4 isoform 1 p... 27 4.6
>gi|31563402 chemokine-like factor superfamily 1 isoform 5 [Homo
sapiens]
Length = 61
Score = 120 bits (302), Expect = 2e-28
Identities = 61/61 (100%), Positives = 61/61 (100%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAALDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG 60
MDPEHAKPESSEAPSGNLKQPETAAALDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAALDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG 60
Query: 61 R 61
R
Sbjct: 61 R 61
>gi|31563398 chemokine-like factor superfamily 1 isoform 4 [Homo
sapiens]
Length = 116
Score = 119 bits (297), Expect = 7e-28
Identities = 60/60 (100%), Positives = 60/60 (100%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAALDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG 60
MDPEHAKPESSEAPSGNLKQPETAAALDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAALDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG 60
>gi|31563396 chemokine-like factor superfamily 1 isoform 3 [Homo
sapiens]
Length = 122
Score = 112 bits (280), Expect = 6e-26
Identities = 60/66 (90%), Positives = 60/66 (90%), Gaps = 6/66 (9%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAAL------DLTNSIITAVFLSVVAILAMQEKKRRH 54
MDPEHAKPESSEAPSGNLKQPETAAAL DLTNSIITAVFLSVVAILAMQEKKRRH
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAALASSGSVDLTNSIITAVFLSVVAILAMQEKKRRH 60
Query: 55 LLYVGG 60
LLYVGG
Sbjct: 61 LLYVGG 66
>gi|31563394 chemokine-like factor superfamily 1 isoform 2 [Homo
sapiens]
Length = 114
Score = 96.3 bits (238), Expect = 5e-21
Identities = 61/114 (53%), Positives = 61/114 (53%), Gaps = 53/114 (46%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAAL--------------------------------- 27
MDPEHAKPESSEAPSGNLKQPETAAAL
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAALSLILGALACFIITQANESFITITSLEICIVVFF 60
Query: 28 --------------------DLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGR 61
DLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGR
Sbjct: 61 ILIYVLTLHHLLTYLHWPLLDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGR 114
>gi|31563392 chemokine-like factor superfamily 1 isoform 1 [Homo
sapiens]
Length = 169
Score = 94.4 bits (233), Expect = 2e-20
Identities = 60/113 (53%), Positives = 60/113 (53%), Gaps = 53/113 (46%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAAL--------------------------------- 27
MDPEHAKPESSEAPSGNLKQPETAAAL
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAALSLILGALACFIITQANESFITITSLEICIVVFF 60
Query: 28 --------------------DLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG 60
DLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG
Sbjct: 61 ILIYVLTLHHLLTYLHWPLLDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG 113
>gi|148743778 chemokine-like factor superfamily 1 isoform 14 [Homo
sapiens]
Length = 231
Score = 68.9 bits (167), Expect = 8e-13
Identities = 35/35 (100%), Positives = 35/35 (100%)
Query: 27 LDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGR 61
LDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGR
Sbjct: 197 LDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGR 231
Score = 63.2 bits (152), Expect = 4e-11
Identities = 29/37 (78%), Positives = 34/37 (91%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAALDLTNSIITAV 37
MDPEHAKPESSEAPSGNLKQPETAAAL + S++++V
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAALASSGSVVSSV 37
>gi|148743783 chemokine-like factor superfamily 1 isoform 13 [Homo
sapiens]
Length = 286
Score = 67.0 bits (162), Expect = 3e-12
Identities = 34/34 (100%), Positives = 34/34 (100%)
Query: 27 LDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG 60
LDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG
Sbjct: 197 LDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG 230
Score = 63.2 bits (152), Expect = 4e-11
Identities = 29/37 (78%), Positives = 34/37 (91%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAALDLTNSIITAV 37
MDPEHAKPESSEAPSGNLKQPETAAAL + S++++V
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAALASSGSVVSSV 37
>gi|31563424 chemokine-like factor superfamily 1 isoform 12 [Homo
sapiens]
Length = 28
Score = 58.2 bits (139), Expect = 1e-09
Identities = 27/27 (100%), Positives = 27/27 (100%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAAL 27
MDPEHAKPESSEAPSGNLKQPETAAAL
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAAL 27
>gi|93141024 chemokine-like factor isoform e [Homo sapiens]
Length = 113
Score = 28.5 bits (62), Expect = 1.2
Identities = 10/21 (47%), Positives = 18/21 (85%)
Query: 27 LDLTNSIITAVFLSVVAILAM 47
LD+ NS++T VF+ +V++LA+
Sbjct: 79 LDIINSLVTTVFMLIVSVLAL 99
>gi|8393581 chemokine-like factor isoform a [Homo sapiens]
Length = 152
Score = 28.5 bits (62), Expect = 1.2
Identities = 10/21 (47%), Positives = 18/21 (85%)
Query: 27 LDLTNSIITAVFLSVVAILAM 47
LD+ NS++T VF+ +V++LA+
Sbjct: 79 LDIINSLVTTVFMLIVSVLAL 99
>gi|32307154 chemokine-like factor isoform b [Homo sapiens]
Length = 99
Score = 28.5 bits (62), Expect = 1.2
Identities = 10/21 (47%), Positives = 18/21 (85%)
Query: 27 LDLTNSIITAVFLSVVAILAM 47
LD+ NS++T VF+ +V++LA+
Sbjct: 26 LDIINSLVTTVFMLIVSVLAL 46
>gi|116284390 glutamate receptor, ionotrophic, AMPA 4 isoform 3
precursor [Homo sapiens]
Length = 433
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 5 HAKPESSEAPSG---NLKQPETAAALDLTNSIITAVFLSVVAILAMQEKKRRHLL 56
+ P +SEAP ++ ETA + +TN+ + V AI + +K+ H L
Sbjct: 52 NTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTL 106
>gi|164419739 glutamate receptor, ionotrophic, AMPA 4 isoform 3
precursor [Homo sapiens]
Length = 433
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 5 HAKPESSEAPSG---NLKQPETAAALDLTNSIITAVFLSVVAILAMQEKKRRHLL 56
+ P +SEAP ++ ETA + +TN+ + V AI + +K+ H L
Sbjct: 52 NTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTL 106
>gi|164419736 glutamate receptor, ionotrophic, AMPA 4 isoform 2
precursor [Homo sapiens]
Length = 884
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 5 HAKPESSEAPSG---NLKQPETAAALDLTNSIITAVFLSVVAILAMQEKKRRHLL 56
+ P +SEAP ++ ETA + +TN+ + V AI + +K+ H L
Sbjct: 52 NTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTL 106
>gi|164419734 glutamate receptor, ionotrophic, AMPA 4 isoform 1
precursor [Homo sapiens]
Length = 902
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 5 HAKPESSEAPSG---NLKQPETAAALDLTNSIITAVFLSVVAILAMQEKKRRHLL 56
+ P +SEAP ++ ETA + +TN+ + V AI + +K+ H L
Sbjct: 52 NTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTL 106
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.128 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,311,408
Number of Sequences: 37866
Number of extensions: 65028
Number of successful extensions: 177
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 19
length of query: 61
length of database: 18,247,518
effective HSP length: 34
effective length of query: 27
effective length of database: 16,960,074
effective search space: 457921998
effective search space used: 457921998
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.