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Search of human proteins with 31543159
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31543159 hypothetical protein LOC57020 [Homo sapiens]
(963 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31543159 hypothetical protein LOC57020 [Homo sapiens] 1923 0.0
gi|112382214 SEC24 (S. cerevisiae) homolog B isoform b [Homo sap... 34 0.58
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 33 1.7
gi|7662228 synaptosomal-associated protein, 91kDa homolog [Homo ... 32 2.2
gi|187475373 c-src tyrosine kinase [Homo sapiens] 32 2.9
gi|4758078 c-src tyrosine kinase [Homo sapiens] 32 2.9
gi|7705387 GTF2I repeat domain containing 1 isoform 1 [Homo sapi... 32 3.7
gi|15011924 GTF2I repeat domain containing 1 isoform 2 [Homo sap... 32 3.7
gi|62244004 modulator of estrogen induced transcription isoform ... 32 3.7
gi|63176611 modulator of estrogen induced transcription isoform ... 32 3.7
gi|41872583 Rho-associated, coiled-coil containing protein kinas... 31 4.9
gi|163937854 ataxin 7-like 1 isoform 1 [Homo sapiens] 31 4.9
gi|211971080 ataxin 7-like 1 isoform 3 [Homo sapiens] 31 4.9
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens] 31 4.9
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 31 4.9
gi|62955803 nucleoporin 188kDa [Homo sapiens] 31 4.9
gi|239748549 PREDICTED: hypothetical protein LOC100129791 [Homo ... 31 6.4
gi|239742533 PREDICTED: hypothetical protein LOC100129791 [Homo ... 31 6.4
gi|239754018 PREDICTED: hypothetical protein LOC100129791 [Homo ... 30 8.3
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 30 8.3
gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens] 30 8.3
>gi|31543159 hypothetical protein LOC57020 [Homo sapiens]
Length = 963
Score = 1923 bits (4982), Expect = 0.0
Identities = 963/963 (100%), Positives = 963/963 (100%)
Query: 1 MAVFPWHSRNRNYKAEFASCRLEAVPLEFGDYHPLKPITVTESKTKKVNRKGSTSSTSSS 60
MAVFPWHSRNRNYKAEFASCRLEAVPLEFGDYHPLKPITVTESKTKKVNRKGSTSSTSSS
Sbjct: 1 MAVFPWHSRNRNYKAEFASCRLEAVPLEFGDYHPLKPITVTESKTKKVNRKGSTSSTSSS 60
Query: 61 SSSSVVDPLSSVLDGTDPLSMFAATADPAALAAAMDSSRRKRDRDDNSVVGSDFEPWTNK 120
SSSSVVDPLSSVLDGTDPLSMFAATADPAALAAAMDSSRRKRDRDDNSVVGSDFEPWTNK
Sbjct: 61 SSSSVVDPLSSVLDGTDPLSMFAATADPAALAAAMDSSRRKRDRDDNSVVGSDFEPWTNK 120
Query: 121 RGEILARYTTTEKLSINLFMGSEKGKAGTATLAMSEKVRTRLEELDDFEEGSQKELLNLT 180
RGEILARYTTTEKLSINLFMGSEKGKAGTATLAMSEKVRTRLEELDDFEEGSQKELLNLT
Sbjct: 121 RGEILARYTTTEKLSINLFMGSEKGKAGTATLAMSEKVRTRLEELDDFEEGSQKELLNLT 180
Query: 181 QQDYVNRIEELNQSLKDAWASDQKVKALKIVIQCSKLLSDTSVIQFYPSKFVLITDILDT 240
QQDYVNRIEELNQSLKDAWASDQKVKALKIVIQCSKLLSDTSVIQFYPSKFVLITDILDT
Sbjct: 181 QQDYVNRIEELNQSLKDAWASDQKVKALKIVIQCSKLLSDTSVIQFYPSKFVLITDILDT 240
Query: 241 FGKLVYERIFSMCVDSRSVLPDHFSPENANDTAKETCLNWFFKIASIRELIPRFYVEASI 300
FGKLVYERIFSMCVDSRSVLPDHFSPENANDTAKETCLNWFFKIASIRELIPRFYVEASI
Sbjct: 241 FGKLVYERIFSMCVDSRSVLPDHFSPENANDTAKETCLNWFFKIASIRELIPRFYVEASI 300
Query: 301 LKCNKFLSKTGISECLPRLTCMIRGIGDPLVSVYARAYLCRVGMEVAPHLKETLNKNFFD 360
LKCNKFLSKTGISECLPRLTCMIRGIGDPLVSVYARAYLCRVGMEVAPHLKETLNKNFFD
Sbjct: 301 LKCNKFLSKTGISECLPRLTCMIRGIGDPLVSVYARAYLCRVGMEVAPHLKETLNKNFFD 360
Query: 361 FLLTFKQIHGDTVQNQLVVQGVELPSYLPLYPPAMDWIFQCISYHAPEALLTEMMERCKK 420
FLLTFKQIHGDTVQNQLVVQGVELPSYLPLYPPAMDWIFQCISYHAPEALLTEMMERCKK
Sbjct: 361 FLLTFKQIHGDTVQNQLVVQGVELPSYLPLYPPAMDWIFQCISYHAPEALLTEMMERCKK 420
Query: 421 LGNNALLLNSVMSAFRAEFIATRSMDFIGMIKECDESGFPKHLLFRSLGLNLALADPPES 480
LGNNALLLNSVMSAFRAEFIATRSMDFIGMIKECDESGFPKHLLFRSLGLNLALADPPES
Sbjct: 421 LGNNALLLNSVMSAFRAEFIATRSMDFIGMIKECDESGFPKHLLFRSLGLNLALADPPES 480
Query: 481 DRLQILNEAWKVITKLKNPQDYINCAEVWVEYTCKHFTKREVNTVLADVIKHMTPDRAFE 540
DRLQILNEAWKVITKLKNPQDYINCAEVWVEYTCKHFTKREVNTVLADVIKHMTPDRAFE
Sbjct: 481 DRLQILNEAWKVITKLKNPQDYINCAEVWVEYTCKHFTKREVNTVLADVIKHMTPDRAFE 540
Query: 541 DSYPQLQLIIKKVIAHFHDFSVLFSVEKFLPFLDMFQKESVRVEVCKCIMDAFIKHQQEP 600
DSYPQLQLIIKKVIAHFHDFSVLFSVEKFLPFLDMFQKESVRVEVCKCIMDAFIKHQQEP
Sbjct: 541 DSYPQLQLIIKKVIAHFHDFSVLFSVEKFLPFLDMFQKESVRVEVCKCIMDAFIKHQQEP 600
Query: 601 TKDPVILNALLHVCKTMHDSVNALTLEDEKRMLSYLINGFIKMVSFGRDFEQQLSFYVES 660
TKDPVILNALLHVCKTMHDSVNALTLEDEKRMLSYLINGFIKMVSFGRDFEQQLSFYVES
Sbjct: 601 TKDPVILNALLHVCKTMHDSVNALTLEDEKRMLSYLINGFIKMVSFGRDFEQQLSFYVES 660
Query: 661 RSMFCNLEPVLVQLIHSVNRLAMETRKVMKGNHSRKTAAFVRACVAYCFITIPSLAGIFT 720
RSMFCNLEPVLVQLIHSVNRLAMETRKVMKGNHSRKTAAFVRACVAYCFITIPSLAGIFT
Sbjct: 661 RSMFCNLEPVLVQLIHSVNRLAMETRKVMKGNHSRKTAAFVRACVAYCFITIPSLAGIFT 720
Query: 721 RLNLYLHSGQVALANQCLSQADAFFKAAISLVPEVPKMINIDGKMRPSESFLLEFLCNFF 780
RLNLYLHSGQVALANQCLSQADAFFKAAISLVPEVPKMINIDGKMRPSESFLLEFLCNFF
Sbjct: 721 RLNLYLHSGQVALANQCLSQADAFFKAAISLVPEVPKMINIDGKMRPSESFLLEFLCNFF 780
Query: 781 STLLIVPDHPEHGVLFLVRELLNVIQDYTWEDNSDEKIRIYTCVLHLLSAMSQETYLYHI 840
STLLIVPDHPEHGVLFLVRELLNVIQDYTWEDNSDEKIRIYTCVLHLLSAMSQETYLYHI
Sbjct: 781 STLLIVPDHPEHGVLFLVRELLNVIQDYTWEDNSDEKIRIYTCVLHLLSAMSQETYLYHI 840
Query: 841 DKVDSNDSLYGGDSKFLAENNKLCETVMAQILEHLKTLAKDEALKRQSSLGLSFFNSILA 900
DKVDSNDSLYGGDSKFLAENNKLCETVMAQILEHLKTLAKDEALKRQSSLGLSFFNSILA
Sbjct: 841 DKVDSNDSLYGGDSKFLAENNKLCETVMAQILEHLKTLAKDEALKRQSSLGLSFFNSILA 900
Query: 901 HGDLRNNKLNQLSVNLWHLAQRHGCADTRTMVKTLEYIKKQSKQPDMTHLTELALRLPLQ 960
HGDLRNNKLNQLSVNLWHLAQRHGCADTRTMVKTLEYIKKQSKQPDMTHLTELALRLPLQ
Sbjct: 901 HGDLRNNKLNQLSVNLWHLAQRHGCADTRTMVKTLEYIKKQSKQPDMTHLTELALRLPLQ 960
Query: 961 TRT 963
TRT
Sbjct: 961 TRT 963
>gi|112382214 SEC24 (S. cerevisiae) homolog B isoform b [Homo
sapiens]
Length = 1233
Score = 34.3 bits (77), Expect = 0.58
Identities = 15/57 (26%), Positives = 35/57 (61%)
Query: 33 HPLKPITVTESKTKKVNRKGSTSSTSSSSSSSVVDPLSSVLDGTDPLSMFAATADPA 89
HP++P+T ++ + +KG SS+++SS+S + + ++ G+ P + ++ + PA
Sbjct: 335 HPVEPVTSVTQPSELLQQKGVDSSSTTSSASPMPNSYDALEGGSYPDMLSSSASSPA 391
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 32.7 bits (73), Expect = 1.7
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 40 VTESKTKKVNRKGSTSSTSSSSSSSVVDPLSSVLDGTDPLSMFAATADPAALAAAMDSSR 99
+ +SK KK +K SS+SSSSSSS D S +D +AT + S +
Sbjct: 178 IPKSKVKKEEKKRHKSSSSSSSSSSDSDSSSDSQSSSDSSDSESATEE--------KSKK 229
Query: 100 RKRDRDDNS 108
RK+ NS
Sbjct: 230 RKKKHRKNS 238
>gi|7662228 synaptosomal-associated protein, 91kDa homolog [Homo
sapiens]
Length = 907
Score = 32.3 bits (72), Expect = 2.2
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 37 PITVTESKTKKVNRKGSTSSTSSSSSSSVVDPLSSVLDGTDPLSMFAATADPAALAAAMD 96
P+T ++ + N + + +T S+SSSS DP SV DG L M T PA A +
Sbjct: 684 PVTPAQNNLLQPNFEAAFGTTPSTSSSSSFDP--SVFDGLGDLLM--PTMAPAGQPAPVS 739
Query: 97 SSRRKRDRDDNSVVGSDFE-PWTNKRGEILARYTTTEKLSINLFMGSEKGKAG 148
+ +GSD + + G + TTT+K + G +K G
Sbjct: 740 MVPPSPAMAASKALGSDLDSSLASLVGNLGISGTTTKKGDLQWNAGEKKLTGG 792
>gi|187475373 c-src tyrosine kinase [Homo sapiens]
Length = 450
Score = 32.0 bits (71), Expect = 2.9
Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 31/136 (22%)
Query: 790 PEHGVLFLVRELLNVIQDYTWEDNSDEKIRIYTCVLHLLSAMSQETYLYHIDKVDSNDSL 849
PE G LFLVRE N DYT + D K+ Y +YH K+ ++ +
Sbjct: 99 PETG-LFLVRESTNYPGDYTLCVSCDGKVEHY-------------RIMYHASKLSIDEEV 144
Query: 850 YGGDSKFLAEN-----NKLCETVMAQILEHLKTLAKDE-----------ALKRQSSLGLS 893
Y + L E+ + LC ++ + A+DE LK ++G
Sbjct: 145 YFENLMQLVEHYTSDADGLCTRLIKPKVMEGTVAAQDEFYRSGWALNMKELKLLQTIGKG 204
Query: 894 FFNSILAHGDLRNNKL 909
F ++ GD R NK+
Sbjct: 205 EFGDVML-GDYRGNKV 219
>gi|4758078 c-src tyrosine kinase [Homo sapiens]
Length = 450
Score = 32.0 bits (71), Expect = 2.9
Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 31/136 (22%)
Query: 790 PEHGVLFLVRELLNVIQDYTWEDNSDEKIRIYTCVLHLLSAMSQETYLYHIDKVDSNDSL 849
PE G LFLVRE N DYT + D K+ Y +YH K+ ++ +
Sbjct: 99 PETG-LFLVRESTNYPGDYTLCVSCDGKVEHY-------------RIMYHASKLSIDEEV 144
Query: 850 YGGDSKFLAEN-----NKLCETVMAQILEHLKTLAKDE-----------ALKRQSSLGLS 893
Y + L E+ + LC ++ + A+DE LK ++G
Sbjct: 145 YFENLMQLVEHYTSDADGLCTRLIKPKVMEGTVAAQDEFYRSGWALNMKELKLLQTIGKG 204
Query: 894 FFNSILAHGDLRNNKL 909
F ++ GD R NK+
Sbjct: 205 EFGDVML-GDYRGNKV 219
>gi|7705387 GTF2I repeat domain containing 1 isoform 1 [Homo
sapiens]
Length = 959
Score = 31.6 bits (70), Expect = 3.7
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 34 PLKPITVTESKTKKVNRKGSTSSTSSSSSSSVVDP 68
P K ++ + K K+V+ S SS+SSSSSSS +P
Sbjct: 891 PAKDSSIPKRKRKRVSEGNSVSSSSSSSSSSSSNP 925
>gi|15011924 GTF2I repeat domain containing 1 isoform 2 [Homo
sapiens]
Length = 944
Score = 31.6 bits (70), Expect = 3.7
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 34 PLKPITVTESKTKKVNRKGSTSSTSSSSSSSVVDP 68
P K ++ + K K+V+ S SS+SSSSSSS +P
Sbjct: 876 PAKDSSIPKRKRKRVSEGNSVSSSSSSSSSSSSNP 910
>gi|62244004 modulator of estrogen induced transcription isoform b
[Homo sapiens]
Length = 1016
Score = 31.6 bits (70), Expect = 3.7
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 42 ESKTKKVNRKGSTSSTSSSSSSSV----VDPLSSVLDGTDPLSMF 82
+SKT + KGSTSSTS SS SS V LSS D ++F
Sbjct: 342 DSKTSSKDDKGSTSSTSGSSGSSTKNIWVSGLSSNTKAADLKNLF 386
>gi|63176611 modulator of estrogen induced transcription isoform a
[Homo sapiens]
Length = 1034
Score = 31.6 bits (70), Expect = 3.7
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 42 ESKTKKVNRKGSTSSTSSSSSSSV----VDPLSSVLDGTDPLSMF 82
+SKT + KGSTSSTS SS SS V LSS D ++F
Sbjct: 360 DSKTSSKDDKGSTSSTSGSSGSSTKNIWVSGLSSNTKAADLKNLF 404
>gi|41872583 Rho-associated, coiled-coil containing protein kinase 2
[Homo sapiens]
Length = 1388
Score = 31.2 bits (69), Expect = 4.9
Identities = 20/62 (32%), Positives = 28/62 (45%)
Query: 847 DSLYGGDSKFLAENNKLCETVMAQILEHLKTLAKDEALKRQSSLGLSFFNSILAHGDLRN 906
DSL G SK + N LC A+I +H K L R+ LG + I H +N
Sbjct: 297 DSLVGTYSKIMDHKNSLCFPEDAEISKHAKNLICAFLTDREVRLGRNGVEEIRQHPFFKN 356
Query: 907 NK 908
++
Sbjct: 357 DQ 358
>gi|163937854 ataxin 7-like 1 isoform 1 [Homo sapiens]
Length = 861
Score = 31.2 bits (69), Expect = 4.9
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 46 KKVNRKGSTSSTSSSSSSSVVDPLSSVLDG 75
KK + STSS+SSSSSSS+ LSS L G
Sbjct: 643 KKRKPQSSTSSSSSSSSSSLQTSLSSPLSG 672
>gi|211971080 ataxin 7-like 1 isoform 3 [Homo sapiens]
Length = 738
Score = 31.2 bits (69), Expect = 4.9
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 46 KKVNRKGSTSSTSSSSSSSVVDPLSSVLDG 75
KK + STSS+SSSSSSS+ LSS L G
Sbjct: 519 KKRKPQSSTSSSSSSSSSSLQTSLSSPLSG 548
>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
Length = 2017
Score = 31.2 bits (69), Expect = 4.9
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 98 SRRKRDRDDNSVVGSDFEPWTNKRGEILARYTTTEKLSINLFMGSEKGKAGTATLAMSEK 157
SR+++DR + + S+ +R E A + +++ + GK + L +E+
Sbjct: 1101 SRQEQDRSTVNALTSELRDLRAQREEAAAAHA--QEVRRLQEQARDLGKQRDSCLREAEE 1158
Query: 158 VRTRLEELDDFEEGSQKELL 177
+RT+L L+D +G ++ELL
Sbjct: 1159 LRTQLRLLEDARDGLRRELL 1178
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 31.2 bits (69), Expect = 4.9
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 41 TESKTKKVNRKGSTSSTSSSSSSSVVDPLSSVLDGTDPLSMFAATADPAALAA 93
+ S + + S+SS+SSSSSSS D SS +D + A TA P+A AA
Sbjct: 2648 SSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSC--SSDDEAAPAPTAGPSAQAA 2698
Score = 30.8 bits (68), Expect = 6.4
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 53 STSSTSSSSSSSVVDPLSSVLDGTDPLSMFAATADPAALAAAMDSSRRKRDRDDNSVVGS 112
S+SS+SSSSSSS SS + S ++++ ++ +++ SS D++S S
Sbjct: 2622 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSS 2681
Query: 113 DFE 115
D E
Sbjct: 2682 DDE 2684
>gi|62955803 nucleoporin 188kDa [Homo sapiens]
Length = 1749
Score = 31.2 bits (69), Expect = 4.9
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 801 LLNVIQDYTWEDNSDEKIRIYTCVLHLLSAMSQETYLYHIDKVDSNDSL 849
L+ I DY +E E+ I CVLHLL+ E + Y ++ D D L
Sbjct: 121 LILKIADYYYE----ERTCILRCVLHLLTYFQDERHPYRVEYADCVDKL 165
>gi|239748549 PREDICTED: hypothetical protein LOC100129791 [Homo
sapiens]
Length = 338
Score = 30.8 bits (68), Expect = 6.4
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 104 RDDNSVVGSDFEPWTNKRGEILARYTTTEKLSINLFMGSEKGKAGTATLAMSEKVRTRLE 163
R+D G E + E + R T TEK L K + +R+R +
Sbjct: 56 REDIQTKGKKVENFEKNLEECITRITNTEKCLKELMELKTKAR---ELREECRSLRSRCD 112
Query: 164 ELDDFEEGSQKELLNLTQQDYV--NRIEELNQSLKDAW 199
+L++ + E+ + Q+ V RI+ QSL++ W
Sbjct: 113 QLEERVSAMEDEMNEMKQEGKVREKRIKRNEQSLQEIW 150
>gi|239742533 PREDICTED: hypothetical protein LOC100129791 [Homo
sapiens]
Length = 338
Score = 30.8 bits (68), Expect = 6.4
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 104 RDDNSVVGSDFEPWTNKRGEILARYTTTEKLSINLFMGSEKGKAGTATLAMSEKVRTRLE 163
R+D G E + E + R T TEK L K + +R+R +
Sbjct: 56 REDIQTKGKKVENFEKNLEECITRITNTEKCLKELMELKTKAR---ELREECRSLRSRCD 112
Query: 164 ELDDFEEGSQKELLNLTQQDYV--NRIEELNQSLKDAW 199
+L++ + E+ + Q+ V RI+ QSL++ W
Sbjct: 113 QLEERVSAMEDEMNEMKQEGKVREKRIKRNEQSLQEIW 150
>gi|239754018 PREDICTED: hypothetical protein LOC100129791 [Homo
sapiens]
Length = 338
Score = 30.4 bits (67), Expect = 8.3
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 104 RDDNSVVGSDFEPWTNKRGEILARYTTTEKLSINLFMGSEKGKAGTATLAMSEKVRTRLE 163
R+D G + E + E + R T TEK L K + +R+R +
Sbjct: 56 REDIQTKGKEVENFEKNLEECITRITNTEKCLKELMELKTKAR---ELCEECRSLRSRCD 112
Query: 164 ELDDFEEGSQKELLNLTQQDYV--NRIEELNQSLKDAW 199
+L++ + E+ + Q+ RI+ QSL++ W
Sbjct: 113 QLEERVSAMEDEMNEMKQEGKFREKRIKRNEQSLQEIW 150
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 30.4 bits (67), Expect = 8.3
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 19 SCRLEAVPLE-FGDYHP-LKPITVTESKTKKVNRKGSTSSTSSSSSSSVVDPLSSVLDGT 76
S +L VP+E HP K T T S+++ R ++ S S SSSSS SS +
Sbjct: 534 SVKLTEVPVEPVLTVHPESKSKTKTRSRSRGRARNKTSKSRSRSSSSS--SSSSSSTSSS 591
Query: 77 DPLSMFAATADPAALAAAMDSSRRKRDRDDNSVVGSDFEPWTNKRG 122
S + ++ + +++ S+ RD +S S E + RG
Sbjct: 592 SGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRG 637
>gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens]
Length = 170
Score = 30.4 bits (67), Expect = 8.3
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 39 TVTESKTKKVNRKGSTSSTSSSSSSSVVDPLSSVLDGTDPLSMFAATAD----PAALAAA 94
T E K KK K TSS+SSSS SS D S + + S + D ++ +A+
Sbjct: 72 TNVERKAKKKRSKSVTSSSSSSSDSSASDSSSESEETSTSSSSEDSDTDESSSSSSSSAS 131
Query: 95 MDSSRRKRDRDDNSVVGSDFEPWTNKRGE 123
+S D D +S S T+ +
Sbjct: 132 STTSSSSSDSDSDSSSSSSSSTSTDSSSD 160
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,357,013
Number of Sequences: 37866
Number of extensions: 1378924
Number of successful extensions: 5045
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4941
Number of HSP's gapped (non-prelim): 102
length of query: 963
length of database: 18,247,518
effective HSP length: 112
effective length of query: 851
effective length of database: 14,006,526
effective search space: 11919553626
effective search space used: 11919553626
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.