Guide to the Human Genome
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Name: C16orf62 Sequence: fasta or formatted (963aa) NCBI GI: 31543159
Description:

hypothetical protein LOC57020

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         64           3
 C cysteine            2.5         24           1
 D aspartate           5.6         54           2
 E glutamate           6.3         61           2
 F phenylalanine       5.5         53           2
 G glycine             3.3         32           2
 H histidine           2.7         26           1
 I isoleucine          5.2         50           2
 K lysine              6.9         66           2
 L leucine            11.9        115           3
 M methionine          3.0         29           2
 N asparagine          4.6         44           2
 P proline             3.9         38           2
 Q glutamine           3.5         34           2
 R arginine            4.8         46           2
 S serine              8.1         78           7
 T threonine           5.4         52           3
 V valine              6.5         63           2
 W tryptophan          0.9          9           1
 Y tyrosine            2.6         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC57020 
SEC24B                0.005   SEC24 (S. cerevisiae) homolog B isoform b 
PPIG                  0.004   peptidylprolyl isomerase G 
SNAP91                0.004   synaptosomal-associated protein, 91kDa homolog 
CSK                   0.004   c-src tyrosine kinase 
CSK                   0.004   c-src tyrosine kinase 
GTF2IRD1              0.004   GTF2I repeat domain containing 1 isoform 1 
GTF2IRD1              0.004   GTF2I repeat domain containing 1 isoform 2 
SLTM                  0.004   modulator of estrogen induced transcription isoform ...
SLTM                  0.004   modulator of estrogen induced transcription isoform ...
ROCK2                 0.003   Rho-associated, coiled-coil containing protein kinas...
ATXN7L1               0.003   ataxin 7-like 1 isoform 1 
ATXN7L1               0.003   ataxin 7-like 1 isoform 3 
CROCC                 0.003   ciliary rootlet coiled-coil 
TNRC18                0.003   trinucleotide repeat containing 18 
NUP188                0.003   nucleoporin 188kDa 
LOC100129791          0.003   PREDICTED: hypothetical protein LOC100129791 
LOC100129791          0.003   PREDICTED: hypothetical protein LOC100129791 
LOC100129791          0.003   PREDICTED: hypothetical protein LOC100129791 
PNN                   0.003   pinin, desmosome associated protein 
ZCCHC10               0.003   zinc finger, CCHC domain containing 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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