Guide to the Human Genome
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Name: C1orf105 Sequence: fasta or formatted (183aa) NCBI GI: 31543099
Description:

hypothetical protein LOC92346

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8          7           1
 C cysteine            2.2          4           1
 D aspartate           3.8          7           2
 E glutamate           5.5         10           1
 F phenylalanine       3.8          7           1
 G glycine             1.6          3           1
 H histidine           2.7          5           1
 I isoleucine          3.8          7           1
 K lysine              8.7         16           2
 L leucine            10.9         20           2
 M methionine          4.4          8           1
 N asparagine          3.8          7           1
 P proline             9.8         18           1
 Q glutamine           5.5         10           2
 R arginine            7.7         14           2
 S serine              8.2         15           2
 T threonine           7.1         13           2
 V valine              3.8          7           1
 W tryptophan          0.5          1           1
 Y tyrosine            2.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC92346 
BAZ2B                 0.020   bromodomain adjacent to zinc finger domain, 2B [Homo...
DNAH9                 0.014   dynein, axonemal, heavy chain 9 isoform 2 
ORC1L                 0.011   origin recognition complex, subunit 1 
PHLDB2                0.011   pleckstrin homology-like domain, family B, member 2...
PHLDB2                0.011   pleckstrin homology-like domain, family B, member 2...
PHLDB2                0.011   pleckstrin homology-like domain, family B, member 2...
PHLDB2                0.011   pleckstrin homology-like domain, family B, member 2 ...
ACACB                 0.009   acetyl-Coenzyme A carboxylase beta 
ATF2                  0.009   activating transcription factor 2 
FLJ46321              0.009   hypothetical protein LOC389763 
MAMLD1                0.006   mastermind-like domain containing 1 
EYS                   0.006   eyes shut homolog isoform 2 
EYS                   0.006   eyes shut homolog isoform 1 
EYS                   0.006   eyes shut homolog isoform 3 
GSTM1                 0.006   glutathione S-transferase mu 1 isoform 2 
GSTM1                 0.006   glutathione S-transferase mu 1 isoform 1 
TOX3                  0.006   TOX high mobility group box family member 3 isoform...
TOX3                  0.006   TOX high mobility group box family member 3 isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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