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Search of human proteins with 31317295
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31317295 calcium-activated potassium channel beta 2 subunit
[Homo sapiens]
(235 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31317295 calcium-activated potassium channel beta 2 subunit [... 483 e-137
gi|5031823 calcium-activated potassium channel beta 2 subunit [H... 483 e-137
gi|25952099 calcium-activated potassium channel beta 3 subunit i... 185 3e-47
gi|25952095 calcium-activated potassium channel beta 3 subunit i... 185 3e-47
gi|25952105 calcium-activated potassium channel beta 3 subunit i... 185 3e-47
gi|25952102 calcium-activated potassium channel beta 3 subunit i... 185 3e-47
gi|4758626 potassium large conductance calcium-activated channel... 164 6e-41
gi|26051275 calcium-activated potassium channel beta 4 subunit [... 122 2e-28
gi|34147544 zinc finger protein HIT-39 [Homo sapiens] 32 0.47
gi|150170718 zinc finger protein 292 [Homo sapiens] 31 1.1
gi|16554449 zonadhesin isoform 3 [Homo sapiens] 31 1.1
gi|27881494 zonadhesin isoform 6 [Homo sapiens] 31 1.1
gi|47458811 sideroflexin 4 [Homo sapiens] 30 1.8
gi|223468695 zinc finger protein 572 [Homo sapiens] 30 2.3
gi|157266266 WD repeat domain 86 [Homo sapiens] 28 5.2
gi|32996733 Ras association (RalGDS/AF-6) domain family 5 isofor... 28 6.8
gi|32996731 Ras association (RalGDS/AF-6) domain family 5 isofor... 28 6.8
gi|171460922 transmembrane protein 132D [Homo sapiens] 28 8.9
>gi|31317295 calcium-activated potassium channel beta 2 subunit
[Homo sapiens]
Length = 235
Score = 483 bits (1243), Expect = e-137
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MFIWTSGRTSSSYRHDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRAILLGLAMMVCSIM 60
MFIWTSGRTSSSYRHDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRAILLGLAMMVCSIM
Sbjct: 1 MFIWTSGRTSSSYRHDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRAILLGLAMMVCSIM 60
Query: 61 MYFLLGITLLRSYMQSVWTEESQCTLLNASITETFNCSFSCGPDCWKLSQYPCLQVYVNL 120
MYFLLGITLLRSYMQSVWTEESQCTLLNASITETFNCSFSCGPDCWKLSQYPCLQVYVNL
Sbjct: 61 MYFLLGITLLRSYMQSVWTEESQCTLLNASITETFNCSFSCGPDCWKLSQYPCLQVYVNL 120
Query: 121 TSSGEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVVMENFRKYQHFSCYSDPEG 180
TSSGEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVVMENFRKYQHFSCYSDPEG
Sbjct: 121 TSSGEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVVMENFRKYQHFSCYSDPEG 180
Query: 181 NQKSVILTKLYSSNVLFHSLFWPTCMMAGGVAIVAMVKLTQYLSLLCERIQRINR 235
NQKSVILTKLYSSNVLFHSLFWPTCMMAGGVAIVAMVKLTQYLSLLCERIQRINR
Sbjct: 181 NQKSVILTKLYSSNVLFHSLFWPTCMMAGGVAIVAMVKLTQYLSLLCERIQRINR 235
>gi|5031823 calcium-activated potassium channel beta 2 subunit [Homo
sapiens]
Length = 235
Score = 483 bits (1243), Expect = e-137
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MFIWTSGRTSSSYRHDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRAILLGLAMMVCSIM 60
MFIWTSGRTSSSYRHDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRAILLGLAMMVCSIM
Sbjct: 1 MFIWTSGRTSSSYRHDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRAILLGLAMMVCSIM 60
Query: 61 MYFLLGITLLRSYMQSVWTEESQCTLLNASITETFNCSFSCGPDCWKLSQYPCLQVYVNL 120
MYFLLGITLLRSYMQSVWTEESQCTLLNASITETFNCSFSCGPDCWKLSQYPCLQVYVNL
Sbjct: 61 MYFLLGITLLRSYMQSVWTEESQCTLLNASITETFNCSFSCGPDCWKLSQYPCLQVYVNL 120
Query: 121 TSSGEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVVMENFRKYQHFSCYSDPEG 180
TSSGEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVVMENFRKYQHFSCYSDPEG
Sbjct: 121 TSSGEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVVMENFRKYQHFSCYSDPEG 180
Query: 181 NQKSVILTKLYSSNVLFHSLFWPTCMMAGGVAIVAMVKLTQYLSLLCERIQRINR 235
NQKSVILTKLYSSNVLFHSLFWPTCMMAGGVAIVAMVKLTQYLSLLCERIQRINR
Sbjct: 181 NQKSVILTKLYSSNVLFHSLFWPTCMMAGGVAIVAMVKLTQYLSLLCERIQRINR 235
>gi|25952099 calcium-activated potassium channel beta 3 subunit
isoform a [Homo sapiens]
Length = 277
Score = 185 bits (470), Expect = 3e-47
Identities = 97/232 (41%), Positives = 142/232 (61%), Gaps = 7/232 (3%)
Query: 7 GRTSSSYRHDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRAILLGLAMMVCSIMMYFLLG 66
GRT+ ++ Y D D LD K + + AGEDRA++LG AMM S++M+FLLG
Sbjct: 20 GRTAFPASGKKRETDYS---DGDPLDVHKRLPS-SAGEDRAVMLGFAMMGFSVLMFFLLG 75
Query: 67 ITLLRSYMQSVWTEESQCTLLNASITETF-NCSFSCGPDCWKLSQYPCLQVYVNLTSSGE 125
T+L+ +M S+ EES CT ++ I + + +C+F+CG C +YPCLQV+VNL+ G+
Sbjct: 76 TTILKPFMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGKYPCLQVFVNLSHPGQ 135
Query: 126 KLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVVMENF--RKYQHFSCYSDPEGNQK 183
K LL++ EE ++IN KC Y PKC ++ + ++ + E F + FSC+ P +
Sbjct: 136 KALLHYNEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDHKNGTPFSCFYSPASQSE 195
Query: 184 SVILTKLYSSNVLFHSLFWPTCMMAGGVAIVAMVKLTQYLSLLCERIQRINR 235
VIL K Y +FH LFWP+ + GG IV MV+LTQ+LSLLCE+ + R
Sbjct: 196 DVILIKKYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLLCEKYSTVVR 247
>gi|25952095 calcium-activated potassium channel beta 3 subunit
isoform d [Homo sapiens]
Length = 279
Score = 185 bits (469), Expect = 3e-47
Identities = 93/212 (43%), Positives = 135/212 (63%), Gaps = 4/212 (1%)
Query: 27 DHDLLDKRKTVTALKAGEDRAILLGLAMMVCSIMMYFLLGITLLRSYMQSVWTEESQCTL 86
D D LD K + + AGEDRA++LG AMM S++M+FLLG T+L+ +M S+ EES CT
Sbjct: 39 DGDPLDVHKRLPS-SAGEDRAVMLGFAMMGFSVLMFFLLGTTILKPFMLSIQREESTCTA 97
Query: 87 LNASITETF-NCSFSCGPDCWKLSQYPCLQVYVNLTSSGEKLLLYHTEETIKINQKCSYI 145
++ I + + +C+F+CG C +YPCLQV+VNL+ G+K LL++ EE ++IN KC Y
Sbjct: 98 IHTDIMDDWLDCAFTCGVHCHGQGKYPCLQVFVNLSHPGQKALLHYNEEAVQINPKCFYT 157
Query: 146 PKCGKNFEESMSLVNVVMENF--RKYQHFSCYSDPEGNQKSVILTKLYSSNVLFHSLFWP 203
PKC ++ + ++ + E F + FSC+ P + VIL K Y +FH LFWP
Sbjct: 158 PKCHQDRNDLLNSALDIKEFFDHKNGTPFSCFYSPASQSEDVILIKKYDQMAIFHCLFWP 217
Query: 204 TCMMAGGVAIVAMVKLTQYLSLLCERIQRINR 235
+ + GG IV MV+LTQ+LSLLCE+ + R
Sbjct: 218 SLTLLGGALIVGMVRLTQHLSLLCEKYSTVVR 249
>gi|25952105 calcium-activated potassium channel beta 3 subunit
isoform c [Homo sapiens]
Length = 275
Score = 185 bits (469), Expect = 3e-47
Identities = 93/212 (43%), Positives = 135/212 (63%), Gaps = 4/212 (1%)
Query: 27 DHDLLDKRKTVTALKAGEDRAILLGLAMMVCSIMMYFLLGITLLRSYMQSVWTEESQCTL 86
D D LD K + + AGEDRA++LG AMM S++M+FLLG T+L+ +M S+ EES CT
Sbjct: 35 DGDPLDVHKRLPS-SAGEDRAVMLGFAMMGFSVLMFFLLGTTILKPFMLSIQREESTCTA 93
Query: 87 LNASITETF-NCSFSCGPDCWKLSQYPCLQVYVNLTSSGEKLLLYHTEETIKINQKCSYI 145
++ I + + +C+F+CG C +YPCLQV+VNL+ G+K LL++ EE ++IN KC Y
Sbjct: 94 IHTDIMDDWLDCAFTCGVHCHGQGKYPCLQVFVNLSHPGQKALLHYNEEAVQINPKCFYT 153
Query: 146 PKCGKNFEESMSLVNVVMENF--RKYQHFSCYSDPEGNQKSVILTKLYSSNVLFHSLFWP 203
PKC ++ + ++ + E F + FSC+ P + VIL K Y +FH LFWP
Sbjct: 154 PKCHQDRNDLLNSALDIKEFFDHKNGTPFSCFYSPASQSEDVILIKKYDQMAIFHCLFWP 213
Query: 204 TCMMAGGVAIVAMVKLTQYLSLLCERIQRINR 235
+ + GG IV MV+LTQ+LSLLCE+ + R
Sbjct: 214 SLTLLGGALIVGMVRLTQHLSLLCEKYSTVVR 245
>gi|25952102 calcium-activated potassium channel beta 3 subunit
isoform b [Homo sapiens]
Length = 257
Score = 185 bits (469), Expect = 3e-47
Identities = 93/212 (43%), Positives = 135/212 (63%), Gaps = 4/212 (1%)
Query: 27 DHDLLDKRKTVTALKAGEDRAILLGLAMMVCSIMMYFLLGITLLRSYMQSVWTEESQCTL 86
D D LD K + + AGEDRA++LG AMM S++M+FLLG T+L+ +M S+ EES CT
Sbjct: 17 DGDPLDVHKRLPS-SAGEDRAVMLGFAMMGFSVLMFFLLGTTILKPFMLSIQREESTCTA 75
Query: 87 LNASITETF-NCSFSCGPDCWKLSQYPCLQVYVNLTSSGEKLLLYHTEETIKINQKCSYI 145
++ I + + +C+F+CG C +YPCLQV+VNL+ G+K LL++ EE ++IN KC Y
Sbjct: 76 IHTDIMDDWLDCAFTCGVHCHGQGKYPCLQVFVNLSHPGQKALLHYNEEAVQINPKCFYT 135
Query: 146 PKCGKNFEESMSLVNVVMENF--RKYQHFSCYSDPEGNQKSVILTKLYSSNVLFHSLFWP 203
PKC ++ + ++ + E F + FSC+ P + VIL K Y +FH LFWP
Sbjct: 136 PKCHQDRNDLLNSALDIKEFFDHKNGTPFSCFYSPASQSEDVILIKKYDQMAIFHCLFWP 195
Query: 204 TCMMAGGVAIVAMVKLTQYLSLLCERIQRINR 235
+ + GG IV MV+LTQ+LSLLCE+ + R
Sbjct: 196 SLTLLGGALIVGMVRLTQHLSLLCEKYSTVVR 227
>gi|4758626 potassium large conductance calcium-activated channel,
subfamily M, beta member 1 [Homo sapiens]
Length = 191
Score = 164 bits (415), Expect = 6e-41
Identities = 83/193 (43%), Positives = 123/193 (63%), Gaps = 8/193 (4%)
Query: 34 RKTVTALKAGEDRAILLGLAMMVCSIMMYFLLGITLLRSYMQSVWTEESQCTLLNASITE 93
+K V A K GE RA+ LG+ M+VC+++ Y++L T+L Y +SVWT+ES+C L+ +I +
Sbjct: 3 KKLVMAQKRGETRALCLGVTMVVCAVITYYILVTTVLPLYQKSVWTQESKCHLIETNIRD 62
Query: 94 TFNCSFSCGPDCWKLSQYPCLQVYVNLTSSGEKLLLYHTEETIKINQKCSYIPKCGKNFE 153
K+ QYPCL +VN++++G +LYHTE+T NQ+CSYIP N++
Sbjct: 63 QEELKGK------KVPQYPCL--WVNVSAAGRWAVLYHTEDTRDQNQQCSYIPGSVDNYQ 114
Query: 154 ESMSLVNVVMENFRKYQHFSCYSDPEGNQKSVILTKLYSSNVLFHSLFWPTCMMAGGVAI 213
+ + V V F++ Q F C+S P GN+ SV+ +LY L SLFWPT ++ GG+ I
Sbjct: 115 TARADVEKVRAKFQEQQVFYCFSAPRGNETSVLFQRLYGPQALLFSLFWPTFLLTGGLLI 174
Query: 214 VAMVKLTQYLSLL 226
+AMVK QYLS+L
Sbjct: 175 IAMVKSNQYLSIL 187
>gi|26051275 calcium-activated potassium channel beta 4 subunit
[Homo sapiens]
Length = 210
Score = 122 bits (307), Expect = 2e-28
Identities = 65/197 (32%), Positives = 105/197 (53%), Gaps = 12/197 (6%)
Query: 44 EDRAILLGLAMMVCSIMMYFLLGITLLRSYMQSVWTEESQCTLLNAS-ITETFNCSFSCG 102
ED++I LGL +++ ++ F+ G L +Q + E+ CT+L+ I E F C+F+CG
Sbjct: 14 EDKSIRLGLFLIISGVVSLFIFGFCWLSPALQDLQATEANCTVLSVQQIGEVFECTFTCG 73
Query: 103 PDCWKLSQYPCLQVYVNLTSSGEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVV 162
DC SQYPC+QVYVN + S + LL+ E + N KCSYIP C + ++++ V
Sbjct: 74 ADCRGTSQYPCVQVYVNNSESNSRALLHSDEHQLLTNPKCSYIPPCKRENQKNLESV--- 130
Query: 163 MENFRKY-------QHFSCYSDPEGNQKSVILTKLYSSNVLFHSLFWPTCMMAGGVAIVA 215
N+++Y Q F+CY + V+L + + VL H WP GV IV
Sbjct: 131 -MNWQQYWKDEIGSQPFTCYFNQHQRPDDVLLHRTHDEIVLLHCFLWPLVTFVVGVLIVV 189
Query: 216 MVKLTQYLSLLCERIQR 232
+ + L++ E +++
Sbjct: 190 LTICAKSLAVKAEAMKK 206
>gi|34147544 zinc finger protein HIT-39 [Homo sapiens]
Length = 500
Score = 32.0 bits (71), Expect = 0.47
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 24/98 (24%)
Query: 84 CTLLNASITETFNCS------FSCGPDCWKLSQYPCLQVYVNLTSSGE------------ 125
CT + E+ C+ + C PDC + YP L V SGE
Sbjct: 156 CTFPDHQALESHKCAQNLKKPYPC-PDCGRRFSYPSLLVSHRRAHSGECPYVCDQCGKRF 214
Query: 126 ---KLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVN 160
K L H + I +K + P CG+ F S SL N
Sbjct: 215 SQRKNLSQH--QVIHTGEKPYHCPDCGRCFRRSRSLAN 250
>gi|150170718 zinc finger protein 292 [Homo sapiens]
Length = 2723
Score = 30.8 bits (68), Expect = 1.1
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 111 YPCLQVYVNLTSSGEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVVMENFRKY 169
Y C+Q+ + LL H +E KC + PKCG+ F E+ L + +++ Y
Sbjct: 750 YICIQMKCKAGFNSYAELLTHRKEHQVFRAKCMF-PKCGRIFSEAYLLYDHEAQHYNTY 807
>gi|16554449 zonadhesin isoform 3 [Homo sapiens]
Length = 2812
Score = 30.8 bits (68), Expect = 1.1
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 51 GLAMMVCSIMMYFLLGITLLRSYMQS-VWTEESQCTLLNASITETFNCSFSCGPDCWKL 108
GL +C + F G T ++ +W S C L + + NC SC P CW L
Sbjct: 2175 GLYQALCQALQAF--GATCQSQGLKPPLWRNSSFCPLECPAYSSYTNCLPSCSPSCWDL 2231
>gi|27881494 zonadhesin isoform 6 [Homo sapiens]
Length = 2721
Score = 30.8 bits (68), Expect = 1.1
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 51 GLAMMVCSIMMYFLLGITLLRSYMQS-VWTEESQCTLLNASITETFNCSFSCGPDCWKL 108
GL +C + F G T ++ +W S C L + + NC SC P CW L
Sbjct: 2175 GLYQALCQALQAF--GATCQSQGLKPPLWRNSSFCPLECPAYSSYTNCLPSCSPSCWDL 2231
>gi|47458811 sideroflexin 4 [Homo sapiens]
Length = 337
Score = 30.0 bits (66), Expect = 1.8
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 46 RAILLGLAMMVCSIMMYFLLGITLLRSYMQSVWTEESQCTLLNASITETFNCSFSCGPDC 105
R +L G + ++ + YF R S+W + CT+L + F SFS P
Sbjct: 253 RIVLFGTSALIPEVFTYFFKRTQYFRKNPGSLWILKLSCTVLAMGLMVPF--SFSIFPQI 310
Query: 106 WKLSQYPCLQVYVNLTSSGEKLLLYH 131
++ QY L+ + + + E + YH
Sbjct: 311 GQI-QYCSLEEKIQ-SPTEETEIFYH 334
>gi|223468695 zinc finger protein 572 [Homo sapiens]
Length = 529
Score = 29.6 bits (65), Expect = 2.3
Identities = 31/117 (26%), Positives = 44/117 (37%), Gaps = 19/117 (16%)
Query: 86 LLNASITETFNCSFSCGPDCWKLSQYPCLQVYVNLTSSGEK---------------LLLY 130
L+ T T + C PDC K + T +GEK L+
Sbjct: 259 LIEHQRTHTGEKPYKC-PDCGKSFSQSSSLIRHQRTHTGEKPYKCLECEKSFGCNSTLIK 317
Query: 131 HTEETIKINQKCSYIPKCGKNFEESMSLV-NVVMENFRKYQHFSCYSDPEGNQKSVI 186
H + I +K P+CGKNF S +L+ + M K S Y + G +VI
Sbjct: 318 H--QRIHTGEKPYQCPECGKNFSRSSNLITHQKMHTGEKSYESSEYEESLGQNCNVI 372
>gi|157266266 WD repeat domain 86 [Homo sapiens]
Length = 376
Score = 28.5 bits (62), Expect = 5.2
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 81 ESQCTLLNASITETFNCSFSCGPDCWKLSQYPCLQVYVNLTSSGEKLLLYHTE 133
ES T F CS C W + CLQVY TS ++L+ + +
Sbjct: 57 ESYVTFCQLEDEAAFTCSADCTIRRWDVLTGQCLQVYRGHTSIVNRILVANNQ 109
>gi|32996733 Ras association (RalGDS/AF-6) domain family 5 isoform B
[Homo sapiens]
Length = 336
Score = 28.1 bits (61), Expect = 6.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 96 NCSFSCGPDCWKLSQYPCLQ 115
NC F+C P+C L Q C Q
Sbjct: 153 NCKFTCHPECRSLIQLDCSQ 172
>gi|32996731 Ras association (RalGDS/AF-6) domain family 5 isoform A
[Homo sapiens]
Length = 418
Score = 28.1 bits (61), Expect = 6.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 96 NCSFSCGPDCWKLSQYPCLQ 115
NC F+C P+C L Q C Q
Sbjct: 153 NCKFTCHPECRSLIQLDCSQ 172
>gi|171460922 transmembrane protein 132D [Homo sapiens]
Length = 1099
Score = 27.7 bits (60), Expect = 8.9
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 133 EETIKINQKCSYIPKCGKNFEESMSLVNVVMENFRKYQHFS 173
E+ IK++ +C Y+ GK E VNVV+ NF YQH S
Sbjct: 477 EDVIKVSDRCDYVFVNGK---EMKGKVNVVV-NF-TYQHLS 512
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.134 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,277,147
Number of Sequences: 37866
Number of extensions: 329872
Number of successful extensions: 1415
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1386
Number of HSP's gapped (non-prelim): 22
length of query: 235
length of database: 18,247,518
effective HSP length: 99
effective length of query: 136
effective length of database: 14,498,784
effective search space: 1971834624
effective search space used: 1971834624
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.