Guide to the Human Genome
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Name: C5orf38 Sequence: fasta or formatted (138aa) NCBI GI: 30425549
Description:

hypothetical protein LOC153571

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         18           2
 C cysteine            2.2          3           1
 D aspartate           2.9          4           2
 E glutamate           2.2          3           1
 F phenylalanine       1.4          2           1
 G glycine             7.2         10           1
 H histidine           2.9          4           1
 I isoleucine          1.4          2           1
 K lysine              1.4          2           1
 L leucine            15.2         21           2
 M methionine          1.4          2           1
 N asparagine          2.2          3           1
 P proline             9.4         13           2
 Q glutamine           6.5          9           1
 R arginine           10.9         15           2
 S serine              5.8          8           1
 T threonine           2.9          4           1
 V valine              7.2         10           1
 W tryptophan          2.9          4           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC153571 
METTL7B               0.031   methyltransferase like 7B 
SLC25A12              0.027   solute carrier family 25, member 12 
LOC100129979          0.015   PREDICTED: similar to FLJ00287 protein 
LOC100129979          0.015   PREDICTED: similar to FLJ00287 protein 
RUSC2                 0.015   RUN and SH3 domain containing 2 
RUSC2                 0.015   RUN and SH3 domain containing 2 
TBX6                  0.012   T-box 6 
IRX1                  0.008   iroquois homeobox protein 1 
LMTK3                 0.008   lemur tyrosine kinase 3 
LAG3                  0.008   lymphocyte-activation protein 3 precursor 
SIGLEC1               0.008   sialoadhesin precursor 
LOC646079             0.008   PREDICTED: similar to breast cancer anti-estrogen r...
LOXL3                 0.008   lysyl oxidase-like 3 precursor 
THOC3                 0.008   THO complex 3 
WIPF3                 0.004   WAS/WASL interacting protein family, member 3 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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