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Search of human proteins with 29893564
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|29893564 microspherule protein 1 isoform 1 [Homo sapiens]
(462 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|29893564 microspherule protein 1 isoform 1 [Homo sapiens] 904 0.0
gi|59799166 microspherule protein 1 isoform 2 [Homo sapiens] 898 0.0
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 38 0.022
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 38 0.022
gi|18379332 WW domain-containing adapter with a coiled-coil regi... 37 0.029
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 37 0.029
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 37 0.038
gi|239752663 PREDICTED: similar to HSPC088 [Homo sapiens] 36 0.064
gi|8923040 CDKN2A interacting protein [Homo sapiens] 36 0.084
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 35 0.11
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 35 0.14
gi|148833504 interleukin 16 isoform 2 [Homo sapiens] 35 0.14
gi|93141031 paralemmin isoform 1 [Homo sapiens] 35 0.14
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 35 0.14
gi|46249382 paired-like homeobox 2a [Homo sapiens] 35 0.14
gi|162287076 RhoA/RAC/CDC42 exchange factor isoform 3 [Homo sapi... 35 0.14
gi|82546824 forkhead box K1 [Homo sapiens] 35 0.14
gi|47132519 Ras association and pleckstrin homology domains 1 is... 35 0.19
gi|21040334 B-cell CLL/lymphoma 11B isoform 1 [Homo sapiens] 34 0.24
gi|12597635 B-cell CLL/lymphoma 11B isoform 2 [Homo sapiens] 34 0.24
gi|31563338 forkhead box K2 [Homo sapiens] 34 0.24
gi|221139761 zinc finger protein 853 [Homo sapiens] 34 0.32
gi|239755589 PREDICTED: hypothetical protein [Homo sapiens] 33 0.55
gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo ... 33 0.55
gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo ... 33 0.55
gi|190341068 forkhead-associated (FHA) phosphopeptide binding do... 33 0.55
gi|156086740 GTPase activating Rap/RanGAP domain-like 4 isoform ... 33 0.55
gi|156086724 GTPase activating Rap/RanGAP domain-like 4 isoform ... 33 0.55
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 33 0.55
gi|169183877 PREDICTED: similar to hCG1742476 [Homo sapiens] 33 0.71
>gi|29893564 microspherule protein 1 isoform 1 [Homo sapiens]
Length = 462
Score = 904 bits (2336), Expect = 0.0
Identities = 462/462 (100%), Positives = 462/462 (100%)
Query: 1 MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDE 60
MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDE
Sbjct: 1 MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDE 60
Query: 61 LVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVK 120
LVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVK
Sbjct: 61 LVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVK 120
Query: 121 KSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLY 180
KSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLY
Sbjct: 121 KSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLY 180
Query: 181 DPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPD 240
DPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPD
Sbjct: 181 DPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPD 240
Query: 241 AFYLARTAKALQAHWQLMKQYYLLEDQTVQPLPKGDQVLNFSDAEDLIDDSKLKDMRDEV 300
AFYLARTAKALQAHWQLMKQYYLLEDQTVQPLPKGDQVLNFSDAEDLIDDSKLKDMRDEV
Sbjct: 241 AFYLARTAKALQAHWQLMKQYYLLEDQTVQPLPKGDQVLNFSDAEDLIDDSKLKDMRDEV 300
Query: 301 LEHELMVADRRQKREIRQLEQELHKWQVLVDSITGMSSPDFDNQTLAVLRGRMVRYLMRS 360
LEHELMVADRRQKREIRQLEQELHKWQVLVDSITGMSSPDFDNQTLAVLRGRMVRYLMRS
Sbjct: 301 LEHELMVADRRQKREIRQLEQELHKWQVLVDSITGMSSPDFDNQTLAVLRGRMVRYLMRS 360
Query: 361 REITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKNNGDFFIANEGRRPIYIDGRPVL 420
REITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKNNGDFFIANEGRRPIYIDGRPVL
Sbjct: 361 REITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKNNGDFFIANEGRRPIYIDGRPVL 420
Query: 421 CGSKWRLSNNSVVEIASLRFVFLINQDLIALIRAEAAKITPQ 462
CGSKWRLSNNSVVEIASLRFVFLINQDLIALIRAEAAKITPQ
Sbjct: 421 CGSKWRLSNNSVVEIASLRFVFLINQDLIALIRAEAAKITPQ 462
>gi|59799166 microspherule protein 1 isoform 2 [Homo sapiens]
Length = 475
Score = 898 bits (2320), Expect = 0.0
Identities = 459/459 (100%), Positives = 459/459 (100%)
Query: 4 DSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELVE 63
DSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELVE
Sbjct: 17 DSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELVE 76
Query: 64 SSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVKKSK 123
SSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVKKSK
Sbjct: 77 SSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVKKSK 136
Query: 124 QPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLYDPV 183
QPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLYDPV
Sbjct: 137 QPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLYDPV 196
Query: 184 ISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPDAFY 243
ISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPDAFY
Sbjct: 197 ISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPDAFY 256
Query: 244 LARTAKALQAHWQLMKQYYLLEDQTVQPLPKGDQVLNFSDAEDLIDDSKLKDMRDEVLEH 303
LARTAKALQAHWQLMKQYYLLEDQTVQPLPKGDQVLNFSDAEDLIDDSKLKDMRDEVLEH
Sbjct: 257 LARTAKALQAHWQLMKQYYLLEDQTVQPLPKGDQVLNFSDAEDLIDDSKLKDMRDEVLEH 316
Query: 304 ELMVADRRQKREIRQLEQELHKWQVLVDSITGMSSPDFDNQTLAVLRGRMVRYLMRSREI 363
ELMVADRRQKREIRQLEQELHKWQVLVDSITGMSSPDFDNQTLAVLRGRMVRYLMRSREI
Sbjct: 317 ELMVADRRQKREIRQLEQELHKWQVLVDSITGMSSPDFDNQTLAVLRGRMVRYLMRSREI 376
Query: 364 TLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKNNGDFFIANEGRRPIYIDGRPVLCGS 423
TLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKNNGDFFIANEGRRPIYIDGRPVLCGS
Sbjct: 377 TLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKNNGDFFIANEGRRPIYIDGRPVLCGS 436
Query: 424 KWRLSNNSVVEIASLRFVFLINQDLIALIRAEAAKITPQ 462
KWRLSNNSVVEIASLRFVFLINQDLIALIRAEAAKITPQ
Sbjct: 437 KWRLSNNSVVEIASLRFVFLINQDLIALIRAEAAKITPQ 475
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 37.7 bits (86), Expect = 0.022
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 1 MDKDSQGLLDSSLMASGTASRSEDEE-SLAGQKRASSQALGTIPKRRSSSRFIKRKKFDD 59
+ K+++G D M AS S++ SL+ + G K+ SSS D+
Sbjct: 1856 ISKENKGYFDEDSMDEFIASDSDETSMSLSSDDYTKKKKKGKKGKKDSSS---SGSGSDN 1912
Query: 60 ELVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAP 111
++ + S +R G V+ +G+ PS S K + SKA S+ P SPAP
Sbjct: 1913 DVEVIKVWNSRSRGGGEGNVDE---TGNNPSVSLKLEESKATSSSNPSSPAP 1961
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 37.7 bits (86), Expect = 0.022
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 1 MDKDSQGLLDSSLMASGTASRSEDEE-SLAGQKRASSQALGTIPKRRSSSRFIKRKKFDD 59
+ K+++G D M AS S++ SL+ + G K+ SSS D+
Sbjct: 1894 ISKENKGYFDEDSMDEFIASDSDETSMSLSSDDYTKKKKKGKKGKKDSSS---SGSGSDN 1950
Query: 60 ELVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAP 111
++ + S +R G V+ +G+ PS S K + SKA S+ P SPAP
Sbjct: 1951 DVEVIKVWNSRSRGGGEGNVDE---TGNNPSVSLKLEESKATSSSNPSSPAP 1999
>gi|18379332 WW domain-containing adapter with a coiled-coil region
isoform 3 [Homo sapiens]
Length = 544
Score = 37.4 bits (85), Expect = 0.029
Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 28/132 (21%)
Query: 31 QKRASSQALGTIPKRRSSSRFIKRKKFDDELVESSLAKSSTRAKGASGVEP--------- 81
QK A+ A+ + PK R R E+++++ K SG +P
Sbjct: 170 QKEANKMAVNSFPKDRDYRR---------EVMQATATSGFASGKSTSGDKPVSHSCTTPS 220
Query: 82 -GRCSGSEPSSSEKKKVSKAPSTPVPPSPAPA----PGLTKRVKKSKQPLQVTKDLGRWK 136
SG P+S+ S P +PVP SP P P L +++ + LQ T L
Sbjct: 221 TSSASGLNPTSAPPTSASAVPVSPVPQSPIPPLLQDPNLLRQLLPA---LQATLQLNNSN 277
Query: 137 PADDLLLINAVL 148
D+ IN VL
Sbjct: 278 V--DISKINEVL 287
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 37.4 bits (85), Expect = 0.029
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 63 ESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSK-APSTPVPPSPAPAPGLTKRVKK 121
E+S + + K + S S P S + KVS+ A S+P P PAPAPG + +
Sbjct: 396 EASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREI-- 453
Query: 122 SKQPLQVTKDLGRWK 136
S P + GR K
Sbjct: 454 SSSPTSKNRSHGRAK 468
Score = 37.0 bits (84), Expect = 0.038
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 14/122 (11%)
Query: 4 DSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELVE 63
D G+L + E S Q+ ++ AL +RRSSS
Sbjct: 2489 DHNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPAKERRSSS-------------- 2534
Query: 64 SSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVKKSK 123
SS + SS+ + +S SGS S SE + P + P+P P + V++ +
Sbjct: 2535 SSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGR 2594
Query: 124 QP 125
P
Sbjct: 2595 PP 2596
Score = 36.2 bits (82), Expect = 0.064
Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 12/139 (8%)
Query: 11 SSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELV-------- 62
SS +SG++S + SL Q AL +P + + R+ E
Sbjct: 2551 SSSSSSGSSSSDSEGSSLPVQPEV---ALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRS 2607
Query: 63 ESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVKKS 122
SS + SS+ + +S S S SSS S + S+P P P P L K
Sbjct: 2608 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGP-QALPKPASPK 2666
Query: 123 KQPLQVTKDLGRWKPADDL 141
K P + KP D L
Sbjct: 2667 KPPPGERRSRSPRKPIDSL 2685
Score = 32.7 bits (73), Expect = 0.71
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 21 RSEDEESLAGQKRASSQALGTIPKRRSSSRF---IKRKKFDDELVESSLAKSSTRAKGAS 77
RS LA ++R+ S+ T +RS +R I+R+ S+ SS R++ A+
Sbjct: 2041 RSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRR--------SASGSSSDRSRSAT 2092
Query: 78 GVEPGRCSGSEP-----SSSEKKKVSKAPSTPVPPSPAPAPGLTKRVKKSKQPLQVTKDL 132
SGS +SS S+ +P P +PG+ + + S+ P+ V +
Sbjct: 2093 PPATRNHSGSRTPPVALNSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGSSRTPMSVLQQA 2152
Query: 133 G 133
G
Sbjct: 2153 G 2153
Score = 31.6 bits (70), Expect = 1.6
Identities = 37/131 (28%), Positives = 48/131 (36%), Gaps = 29/131 (22%)
Query: 26 ESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELVESSLAKSS-TRAKG-ASGVEPGR 83
+S + S+ + + RS SR K L S + +S R +G A EPG
Sbjct: 256 KSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGT 315
Query: 84 CSGSEPSSSEKKKVSKAPSTPV-------------------------PPSPAPAPGLTKR 118
S PSS E +K PS+P P PAP P L +R
Sbjct: 316 TSTQRPSSPET--ATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAER 373
Query: 119 VKKSKQPLQVT 129
S QPL T
Sbjct: 374 HGGSPQPLATT 384
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 37.0 bits (84), Expect = 0.038
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 24/135 (17%)
Query: 3 KDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELV 62
K + G SS +S ++S S+D E +++A++ T+PK+ ++V
Sbjct: 208 KIANGKAASSSSSSSSSSSSDDSE----EEKAAATPKKTVPKK--------------QVV 249
Query: 63 ESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLT------ 116
+ K++T S S E + K P + VPP AP P +
Sbjct: 250 AKAPVKAATTPTRKSSSSEDSSSDEEEEQKKPMKNKPGPYSSVPPPSAPPPKKSLGTQPP 309
Query: 117 KRVKKSKQPLQVTKD 131
K+ + +QP++ ++D
Sbjct: 310 KKAVEKQQPVESSED 324
>gi|239752663 PREDICTED: similar to HSPC088 [Homo sapiens]
Length = 190
Score = 36.2 bits (82), Expect = 0.064
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 16/85 (18%)
Query: 64 SSLAKSSTRAKGASGVEPGRCSGSEPSS------SEKK----------KVSKAPSTPVPP 107
+++A S TR GA GV G C+ + P + +E++ + A + P P
Sbjct: 3 AAVAGSGTRNDGAGGVACGDCAAASPPTLGAGPRTERRHWPSGALHSARPGAANAAPAPG 62
Query: 108 SPAPAPGLTKRVKKSKQPLQVTKDL 132
PAPAP +T+R + + ++ + L
Sbjct: 63 HPAPAPSVTRRRAEQQDVIRCRRRL 87
>gi|8923040 CDKN2A interacting protein [Homo sapiens]
Length = 580
Score = 35.8 bits (81), Expect = 0.084
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 12/179 (6%)
Query: 15 ASGTASRSEDEESLAGQKRASSQALGTI---PKRRSSSRFIKRKKFDDELVESSLAKSST 71
AS + S SE E L G +S L + P ++S + K + V SS+AK+S+
Sbjct: 279 ASASQSSSEIEVPLLGSSGSSEVELPLLSSKPSSETASSGLTSKTSSEASVSSSVAKNSS 338
Query: 72 RAKGASGVEPGRCSGSEPSSSEKKKVSK-APSTPVPPSPAPAPGLTKRVKKSKQPLQVTK 130
+ G S + P S + S K S+ A S S + G V KS V++
Sbjct: 339 -SSGTSLLTPKSSSSTNTSLLTSKSTSQVAASLLASKSSSQTSG--SLVSKSTSLASVSQ 395
Query: 131 DLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQER--WYALLYDPVISKL 187
+ + + + + S VKFSC+ T +V+++ ++ LY V KL
Sbjct: 396 LASK---SSSQTSTSQLPSKSTSQSSESSVKFSCKLTNEDVKQKQPFFNRLYKTVAWKL 451
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 35.4 bits (80), Expect = 0.11
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 17 GTASRSEDEESLAGQKRASSQALGTIPKR-RSSSRFIKRKKFDDELVESSLAKSSTRAKG 75
G+ SR +E Q R+ S++ G R RS S+ ++K E S ++S +R+K
Sbjct: 315 GSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKS 374
Query: 76 ASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVKKSK 123
+ G S+ SS+KK K T S +P+ ++K + +K
Sbjct: 375 ERSRKRGSKRDSKAGSSKKK---KKEDTDRSQSRSPSRSVSKEREHAK 419
Score = 33.9 bits (76), Expect = 0.32
Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 25 EESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELVESSLAKSSTRAKGASGVEPGRC 84
E+ ++R S + + RS SR ++ + +SS +KS +R++ S
Sbjct: 174 EDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSR 233
Query: 85 SGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVKK--SKQPLQVTKDLGRWK 136
S S+ S KK+ S++PS S + + G ++ K +++ +Q ++G+ K
Sbjct: 234 SRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPK 287
Score = 30.0 bits (66), Expect = 4.6
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 20/128 (15%)
Query: 16 SGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKR--------------KKFDDEL 61
S + SRS+ ++ G+KR+ ++ R S R KR KK D +
Sbjct: 342 SRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDR 401
Query: 62 VES-----SLAKSSTRAKGASGVEPGRC-SGSEPSSSEKKKVSKAPSTPVPPSPAPAPGL 115
+S S++K AK S GR S + ++ E + S++ S P P+ +
Sbjct: 402 SQSRSPSRSVSKEREHAKSESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSR 461
Query: 116 TKRVKKSK 123
+K K++
Sbjct: 462 SKSASKTR 469
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 35.0 bits (79), Expect = 0.14
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 62 VESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLT 116
++ S A S ++A G G E SG E + +K PSTP P + P P LT
Sbjct: 942 LKKSKADSCSQAAGTKGAEETSWSGEE-------RAAKVPSTPPPKAAPPPPALT 989
Score = 30.0 bits (66), Expect = 4.6
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 67 AKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAP 113
A+ T G G P S SS S +PS P PP P PAP
Sbjct: 172 ARHLTLGTGDGGPAPPPAPSSASSSPSPSPSSSSPSPP-PPPPPPAP 217
>gi|148833504 interleukin 16 isoform 2 [Homo sapiens]
Length = 1332
Score = 35.0 bits (79), Expect = 0.14
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 27 SLAGQKRASSQALG--TIPKRRSSSRFIKRKKFDDELVESSLAKSSTRAKGASGVEPGRC 84
SL G KR S G T+ K R + ++ ++ SS S+ G+ G PG
Sbjct: 471 SLEGVKRLESSWHGRPTLEKEREKNSAPPHRRAQKVMIRSS--SDSSYMSGSPGGSPGSG 528
Query: 85 SGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVKKSKQPLQVTKD 131
S +P SS+ + +PS P+ P + R+ + PL ++D
Sbjct: 529 SAEKP-SSDVDISTHSPSLPLAREPVVLSIASSRLPQESPPLPESRD 574
>gi|93141031 paralemmin isoform 1 [Homo sapiens]
Length = 387
Score = 35.0 bits (79), Expect = 0.14
Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 23/224 (10%)
Query: 5 SQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELVES 64
S+ L + L+ +S SE +E L Q + Q K R + R + + E++E
Sbjct: 47 SKALRERWLLEGTPSSASEGDEDLRRQMQDDEQ------KTRLLEDSVSRLEKEIEVLER 100
Query: 65 SLAKSSTRAKGASGVEPGRCSGSEPSSSEKKK--VSKAPSTPVPPSPAPAPGLTKRVKKS 122
+ +T + A+ P R P+ E+K V + TPV G K + S
Sbjct: 101 GDSAPATAKENAAAPSPVRAPAPSPAKEERKTEVVMNSQQTPV--------GTPKDKRVS 152
Query: 123 KQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLYDP 182
PL+ K A + + ++ + +T V S R+ + D
Sbjct: 153 NTPLRTVDGSPMMKAA--MYSVEITVEKDKVTG-ETRVLSSTTLLPRQPLPLGIKVYEDE 209
Query: 183 --VISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTS 224
V+ + A +HP +++ + L KA+E LS+ GST+
Sbjct: 210 TKVVHAVDGTAENGIHP--LSSSEVDELIHKADEVTLSEAGSTA 251
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 35.0 bits (79), Expect = 0.14
Identities = 36/151 (23%), Positives = 53/151 (35%), Gaps = 18/151 (11%)
Query: 5 SQGLLDSSLMASGTASRSEDEE-----------------SLAGQKRASSQALGTIPKRRS 47
S G SS +S + S +E EE S A + AS + + S
Sbjct: 2564 SSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSS 2623
Query: 48 SSRFIKRKKFDDELVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPP 107
SS SS + SS+ + +S S S SSS + S
Sbjct: 2624 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDD 2683
Query: 108 SPAPAPGLTKRVKKSKQPLQVTKDLGRWKPA 138
APAP ++ P + TK G+ +P+
Sbjct: 2684 EAAPAPTAGPSA-QAALPTKATKQAGKARPS 2713
Score = 33.5 bits (75), Expect = 0.42
Identities = 32/139 (23%), Positives = 47/139 (33%), Gaps = 16/139 (11%)
Query: 11 SSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELVESSLAKSS 70
SS AS +S S S + +SS + + SSS SS + SS
Sbjct: 2606 SSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2665
Query: 71 TRAKGASGVEPGRCSGSE----------------PSSSEKKKVSKAPSTPVPPSPAPAPG 114
+ + ++ E CS + P+ + K+ PS P PAP
Sbjct: 2666 SSSSSSTTDEDSSCSSDDEAAPAPTAGPSAQAALPTKATKQAGKARPSAHSPGKKTPAPQ 2725
Query: 115 LTKRVKKSKQPLQVTKDLG 133
+ QPLQ G
Sbjct: 2726 PQAPPPQPTQPLQPKAQAG 2744
Score = 30.4 bits (67), Expect = 3.5
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 79 VEPGRCSGSEPSSSEK-KKVSKAPST-PVPPSPAPAP 113
+EP GS+ S E K +KAP P PP P+PAP
Sbjct: 2364 LEPSSTPGSKKSPPEPVDKRAKAPKARPAPPQPSPAP 2400
Score = 29.6 bits (65), Expect = 6.0
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 98 SKAPSTPVPPSPAPAPGLTKRVKKSKQPLQVTKDLGRWKPA 138
S P++P P SP P PG+T++ +++ + + KDL K A
Sbjct: 1028 SSHPTSPPPASPPPTPGITRK-EEAPENVVEKKDLELEKEA 1067
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 35.0 bits (79), Expect = 0.14
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 67 AKSSTRAKGASGVEPG--RCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVKKSKQ 124
A S+ A GA+G + G RCS SE S++ S P + P PAPGL + S
Sbjct: 151 AASAKGAAGAAGAKKGEARCS-SEDDDSKESTCSPTPDSTASLPPPPAPGLAS-PRLSPS 208
Query: 125 PLQVTKDLG 133
PL V G
Sbjct: 209 PLPVALGSG 217
>gi|162287076 RhoA/RAC/CDC42 exchange factor isoform 3 [Homo
sapiens]
Length = 619
Score = 35.0 bits (79), Expect = 0.14
Identities = 41/161 (25%), Positives = 65/161 (40%), Gaps = 7/161 (4%)
Query: 2 DKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQAL-GTIPKRRSSSRFIKRKKFDDE 60
D+ + G D L G R+ G R S L GT P+ + +R + + E
Sbjct: 5 DRPAPGRTDRILGVMGGMLRACALPGQEGPPRRSPLGLVGTEPESERTEGDHRRDR-EHE 63
Query: 61 LVESSLAKSSTRAKGASG-VEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRV 119
++ +L S G+ G + SG S +S P +P P P P GL + +
Sbjct: 64 VLAGALQPESYSIAGSEGSISASAASGLAAPSGPSSGLSSGPCSPGP--PGPVSGLRRWL 121
Query: 120 KKSKQPLQV--TKDLGRWKPADDLLLINAVLQTNDLTSVHL 158
SK L V D G+ P ++ +L A+ +L + L
Sbjct: 122 DHSKHCLSVETEADSGQAGPYENWMLEPALATGEELPELTL 162
>gi|82546824 forkhead box K1 [Homo sapiens]
Length = 733
Score = 35.0 bits (79), Expect = 0.14
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 346 LAVLRGRMVRYLMRSREITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKNNGDFFIA 405
LA L GR +LMR +T+GR + +D+ + L ISR+ + + F++
Sbjct: 106 LARLEGREFEFLMRQPSVTIGRNSSQGSVDLSMGLSS---FISRRHLQLSFQ-EPHFYLR 161
Query: 406 NEGRRPIYIDG 416
G+ +++DG
Sbjct: 162 CLGKNGVFVDG 172
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 34.7 bits (78), Expect = 0.19
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Query: 9 LDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELVESSLAK 68
L SS + SG++S S E ++ S T P S+ I F + + +
Sbjct: 529 LSSSSIKSGSSSSSIPESQSNHSNQSDSGVSDTQPAGHVRSQSIVSSVFSEAWKRGTQLE 588
Query: 69 SSTRAKGASGVEPGRCSGSEPSSSEKKKVS----KAPSTPVPPSPAPAP 113
S++A+ S P S P S + K V+ PS P+PP P P P
Sbjct: 589 ESSKARMESMNRP-YTSLVPPLSPQPKIVTPYTASQPSPPLPPPPPPPP 636
>gi|21040334 B-cell CLL/lymphoma 11B isoform 1 [Homo sapiens]
Length = 894
Score = 34.3 bits (77), Expect = 0.24
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 17/123 (13%)
Query: 17 GTASRSEDEESLAGQKRASSQALGTIPK-------RRSSSRFIKRKKFDDELVESSLAKS 69
G A DE++L K + LG +P+ ++ F+KR + + A
Sbjct: 582 GAAKALADEKALVLGKVMENVGLGALPQYGELLADKQKRGAFLKRAAGGGDAGDDDDAGG 641
Query: 70 STRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVKKSKQPLQVT 129
A GA G GR G P + + P P+P P+PGL K+ ++V
Sbjct: 642 CGDA-GAGGAVNGRGGGFAPGTEPFPGLF-----PRKPAPLPSPGLNSAAKR----IKVE 691
Query: 130 KDL 132
KDL
Sbjct: 692 KDL 694
>gi|12597635 B-cell CLL/lymphoma 11B isoform 2 [Homo sapiens]
Length = 823
Score = 34.3 bits (77), Expect = 0.24
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 17/123 (13%)
Query: 17 GTASRSEDEESLAGQKRASSQALGTIPK-------RRSSSRFIKRKKFDDELVESSLAKS 69
G A DE++L K + LG +P+ ++ F+KR + + A
Sbjct: 511 GAAKALADEKALVLGKVMENVGLGALPQYGELLADKQKRGAFLKRAAGGGDAGDDDDAGG 570
Query: 70 STRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVKKSKQPLQVT 129
A GA G GR G P + + P P+P P+PGL K+ ++V
Sbjct: 571 CGDA-GAGGAVNGRGGGFAPGTEPFPGLF-----PRKPAPLPSPGLNSAAKR----IKVE 620
Query: 130 KDL 132
KDL
Sbjct: 621 KDL 623
>gi|31563338 forkhead box K2 [Homo sapiens]
Length = 660
Score = 34.3 bits (77), Expect = 0.24
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 24/92 (26%)
Query: 346 LAVLRGRMVRYLMRSREITLGRATKDNQIDVDLSLEGPAWKISRKQGVI----------- 394
+A L GR YLM+ R +T+GR + +DV + G + ISR+ I
Sbjct: 37 VARLEGREFEYLMKKRSVTIGRNSSQGSVDVSM---GHSSFISRRHLEIFTPPGGGGHGG 93
Query: 395 ----------KLKNNGDFFIANEGRRPIYIDG 416
+ GDF++ G+ +++DG
Sbjct: 94 AAPELPPAQPRPDAGGDFYLRCLGKNGVFVDG 125
>gi|221139761 zinc finger protein 853 [Homo sapiens]
Length = 659
Score = 33.9 bits (76), Expect = 0.32
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 8/126 (6%)
Query: 204 QSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPDAFYLARTAKALQAHWQLMKQYYL 263
Q + L + + LL + G Q L+ Q L + L + LQ L +Q L
Sbjct: 231 QQEQLQQQQQLLLLQQQGQLQQQLLQQQQAQLQQQ----LLEQQQAQLQQQLLLQQQEQL 286
Query: 264 LEDQTVQPLPKGDQVLNFSDAEDLIDDSKLKDMRDEVLEHELMVADRRQKREIRQLEQEL 323
+ Q Q L + + L + + L+ +E +E ELM D ++E+ Q QEL
Sbjct: 287 QQQQQQQLLQQQQEQLQ----QQQLQPPPLEPEEEEEVELELMPVDLGSEQELEQQRQEL 342
Query: 324 HKWQVL 329
+ Q L
Sbjct: 343 ERQQEL 348
>gi|239755589 PREDICTED: hypothetical protein [Homo sapiens]
Length = 356
Score = 33.1 bits (74), Expect = 0.55
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 16/77 (20%)
Query: 61 LVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVK 120
L+ SS S+R S E RC +EP S P+ P+PP P P
Sbjct: 153 LLHSSPRWFSSRHSSISEGEGDRCGFAEPPGG-----SSPPAPPLPPPPKPG-------- 199
Query: 121 KSKQPLQVTKDLGRWKP 137
P Q ++ WKP
Sbjct: 200 ---SPTQRAREASSWKP 213
>gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo
sapiens]
Length = 321
Score = 33.1 bits (74), Expect = 0.55
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 15/115 (13%)
Query: 14 MASGTAS-RSEDE-ESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELVESSLAKSST 71
MA+G A R++ + L + R S +A G +P+RR + +K S T
Sbjct: 128 MAAGAAGCRTQARGQRLTSRGRESPEATG-VPERRGDPETRRNRK------------SLT 174
Query: 72 RAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVKKSKQPL 126
G GV C + P S E+ +++ P AP PG + R + PL
Sbjct: 175 PGSGEFGVRSQSCDSTVPESLERALWAQSSQLAGGPGLAPRPGASGRGRWVSAPL 229
>gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo
sapiens]
Length = 321
Score = 33.1 bits (74), Expect = 0.55
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 15/115 (13%)
Query: 14 MASGTAS-RSEDE-ESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELVESSLAKSST 71
MA+G A R++ + L + R S +A G +P+RR + +K S T
Sbjct: 128 MAAGAAGCRTQARGQRLTSRGRESPEATG-VPERRGDPETRRNRK------------SLT 174
Query: 72 RAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVKKSKQPL 126
G GV C + P S E+ +++ P AP PG + R + PL
Sbjct: 175 PGSGEFGVRSQSCDSTVPESLERALWAQSSQLAGGPGLAPRPGASGRGRWVSAPL 229
>gi|190341068 forkhead-associated (FHA) phosphopeptide binding domain
1 [Homo sapiens]
Length = 1412
Score = 33.1 bits (74), Expect = 0.55
Identities = 66/370 (17%), Positives = 149/370 (40%), Gaps = 54/370 (14%)
Query: 23 EDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDD---------ELVESSLAKSSTRA 73
E E LA QK+A ++++ R + ++ + + E++ESS+A +A
Sbjct: 714 ELESLLAQQKKALAKSITQEKNRVKEALEEEQTRVQELEERLARQKEVLESSIAHEKRKA 773
Query: 74 KGASGVEPGRCSGSEPSSSEKKKVSKA--------PSTPVPPSPAPAPGLTKRVKKSKQP 125
K A E + E +++K++S++ + L R+ K K+
Sbjct: 774 KEALESEKRKVQDLENHLTQQKEISESNIAYEKRKAKEAMEKEKKKVQDLENRLTKQKEE 833
Query: 126 LQV---TKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLYDP 182
L++ +D+ K +D L ++ +T S ++ AL +
Sbjct: 834 LELKEQKEDVLNNKLSDALAMVEETQKTKATES---------------LKAESLALKLNE 878
Query: 183 VISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPDAF 242
+++L + + E +Q K + + +EQ + G + + +++ + +H
Sbjct: 879 TLAELETTKTKMIMVEERLILQQKMVKALQDEQESQRHGFEEE--IMEYKEQIKQH---- 932
Query: 243 YLARTAKALQAHWQLMKQYYLLEDQTVQPLPKGDQVLNFSDAEDLI----DDSKLKDMRD 298
A+T +L+ Q + Q++ + + L D +D + +S KDM
Sbjct: 933 --AQTIVSLEEKLQKVTQHHKKIEGEIATLKDNDPAPKEERPQDPLVAPMTESSAKDMAY 990
Query: 299 EVLEHELMVADRR---QKREIRQLEQELHKWQVLVDSITGMSSPDFDNQTLAVLRGRMVR 355
E L +L+ A + Q+ I +L ++L + + + G + + + L +V
Sbjct: 991 EHLIDDLLAAQKEILSQQEVIMKLRKDLTEAHSRMSDLRG----ELNEKQKMELEQNVVL 1046
Query: 356 YLMRSREITL 365
+S+E+++
Sbjct: 1047 VQQQSKELSV 1056
>gi|156086740 GTPase activating Rap/RanGAP domain-like 4 isoform 2
[Homo sapiens]
Length = 715
Score = 33.1 bits (74), Expect = 0.55
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Query: 4 DSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELVE 63
DS+ DS+ T + + + ++ + P + F+K K+ +
Sbjct: 564 DSRARCDSTSSTPKTPDGGHSSQEIKSETSSNPSSPEICPNKEKP--FMKLKENGRAISR 621
Query: 64 SSLAKSSTRAKGASG--VEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPG 114
SS + SS + G +E G GS+PS++ K +P P S +P+ G
Sbjct: 622 SSSSTSSVSSTAGEGEAMEEGDSGGSQPSTTSPFKQEVFVYSPSPSSESPSLG 674
>gi|156086724 GTPase activating Rap/RanGAP domain-like 4 isoform 1
[Homo sapiens]
Length = 730
Score = 33.1 bits (74), Expect = 0.55
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Query: 4 DSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELVE 63
DS+ DS+ T + + + ++ + P + F+K K+ +
Sbjct: 579 DSRARCDSTSSTPKTPDGGHSSQEIKSETSSNPSSPEICPNKEKP--FMKLKENGRAISR 636
Query: 64 SSLAKSSTRAKGASG--VEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPG 114
SS + SS + G +E G GS+PS++ K +P P S +P+ G
Sbjct: 637 SSSSTSSVSSTAGEGEAMEEGDSGGSQPSTTSPFKQEVFVYSPSPSSESPSLG 689
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 33.1 bits (74), Expect = 0.55
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 18/116 (15%)
Query: 2 DKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDEL 61
DK+S G SS +R ++S A +K G +P + + RK+ +
Sbjct: 786 DKNSAGHKPSS-------NRESSKQSAAKEKDLLPSPAGPVPSKDPKTEHGSRKRTISQ- 837
Query: 62 VESSLAKSSTRAKGASGVEPGRCSGSEP-------SSSEKKKVSKAPSTP--VPPS 108
SSL SS K SG S S+ SSS K+ KAPS+ PPS
Sbjct: 838 -SSSLKSSSNSNKETSGSSKNSSSTSKQKKTEGKTSSSSKEVKEKAPSSSSNCPPS 892
>gi|169183877 PREDICTED: similar to hCG1742476 [Homo sapiens]
Length = 278
Score = 32.7 bits (73), Expect = 0.71
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 5/113 (4%)
Query: 21 RSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELVESSLAKSST-----RAKG 75
+S +E L R + ++P R++SS + E S+ K T + K
Sbjct: 147 KSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKE 206
Query: 76 ASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVKKSKQPLQV 128
P +GS+ SS +KKK+ K P + P G + P +V
Sbjct: 207 LVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANGRPPSGGAHPTPRRHFPFRV 259
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,545,333
Number of Sequences: 37866
Number of extensions: 767938
Number of successful extensions: 8473
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 195
Number of HSP's that attempted gapping in prelim test: 7927
Number of HSP's gapped (non-prelim): 640
length of query: 462
length of database: 18,247,518
effective HSP length: 106
effective length of query: 356
effective length of database: 14,233,722
effective search space: 5067205032
effective search space used: 5067205032
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.