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Search of human proteins with 122937299
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122937299 DNA replication helicase 2 homolog [Homo sapiens]
(1146 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122937299 DNA replication helicase 2 homolog [Homo sapiens] 2296 0.0
gi|18375673 regulator of nonsense transcripts 1 [Homo sapiens] 175 2e-43
gi|119392094 immunoglobulin mu binding protein 2 [Homo sapiens] 171 4e-42
gi|14251207 MOV10-like 1 [Homo sapiens] 112 2e-24
gi|113722133 senataxin [Homo sapiens] 102 2e-21
gi|28626521 zinc finger, NFX1-type containing 1 [Homo sapiens] 91 8e-18
gi|156105693 PPAR-alpha interacting complex protein 285 isoform ... 90 1e-17
gi|156105695 PPAR-alpha interacting complex protein 285 isoform ... 90 1e-17
gi|194272168 Mov10, Moloney leukemia virus 10, homolog [Homo sap... 86 3e-16
gi|14211540 Mov10, Moloney leukemia virus 10, homolog [Homo sapi... 86 3e-16
gi|38788372 aquarius [Homo sapiens] 81 5e-15
gi|54792138 helicase with zinc finger domain [Homo sapiens] 80 1e-14
gi|198442844 dynein, axonemal, heavy chain 10 [Homo sapiens] 35 0.53
gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens] 35 0.53
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 32 2.6
gi|70980531 GGA binding partner [Homo sapiens] 32 4.5
gi|105990532 apolipoprotein B precursor [Homo sapiens] 31 5.9
gi|239756892 PREDICTED: hypothetical protein [Homo sapiens] 31 7.7
gi|239751388 PREDICTED: hypothetical protein XP_002347834 [Homo ... 31 7.7
gi|239745895 PREDICTED: hypothetical protein XP_002343612 [Homo ... 31 7.7
gi|55741661 hypothetical protein LOC57653 [Homo sapiens] 31 7.7
>gi|122937299 DNA replication helicase 2 homolog [Homo sapiens]
Length = 1146
Score = 2296 bits (5949), Expect = 0.0
Identities = 1146/1146 (100%), Positives = 1146/1146 (100%)
Query: 1 MKTPCIPSPKQGSKGRGQSPAAQVRGPTWNAPAREGRPGAGHLGHLRVGACARGAQARAF 60
MKTPCIPSPKQGSKGRGQSPAAQVRGPTWNAPAREGRPGAGHLGHLRVGACARGAQARAF
Sbjct: 1 MKTPCIPSPKQGSKGRGQSPAAQVRGPTWNAPAREGRPGAGHLGHLRVGACARGAQARAF 60
Query: 61 FPFLSFLCYPRFRCLFCLQFAIPASRMEQLNELELLMEKSFWEEAELPAELFQKKVVASF 120
FPFLSFLCYPRFRCLFCLQFAIPASRMEQLNELELLMEKSFWEEAELPAELFQKKVVASF
Sbjct: 61 FPFLSFLCYPRFRCLFCLQFAIPASRMEQLNELELLMEKSFWEEAELPAELFQKKVVASF 120
Query: 121 PRTVLSTGMDNRYLVLAVNTVQNKEGNCEKRLVITASQSLENKELCILRNDWCSVPVEPG 180
PRTVLSTGMDNRYLVLAVNTVQNKEGNCEKRLVITASQSLENKELCILRNDWCSVPVEPG
Sbjct: 121 PRTVLSTGMDNRYLVLAVNTVQNKEGNCEKRLVITASQSLENKELCILRNDWCSVPVEPG 180
Query: 181 DIIHLEGDCTSDTWIIDKDFGYLILYPDMLISGTSIASSIRCMRRAVLSETFRSSDPATR 240
DIIHLEGDCTSDTWIIDKDFGYLILYPDMLISGTSIASSIRCMRRAVLSETFRSSDPATR
Sbjct: 181 DIIHLEGDCTSDTWIIDKDFGYLILYPDMLISGTSIASSIRCMRRAVLSETFRSSDPATR 240
Query: 241 QMLIGTVLHEVFQKAINNSFAPEKLQELAFQTIQEIRHLKEMYRLNLSQDEIKQEVEDYL 300
QMLIGTVLHEVFQKAINNSFAPEKLQELAFQTIQEIRHLKEMYRLNLSQDEIKQEVEDYL
Sbjct: 241 QMLIGTVLHEVFQKAINNSFAPEKLQELAFQTIQEIRHLKEMYRLNLSQDEIKQEVEDYL 300
Query: 301 PSFCKWAGDFMHKNTSTDFPQMQLSLPSDNSKDNSTCNIEVVKPMDIEESIWSPRFGLKG 360
PSFCKWAGDFMHKNTSTDFPQMQLSLPSDNSKDNSTCNIEVVKPMDIEESIWSPRFGLKG
Sbjct: 301 PSFCKWAGDFMHKNTSTDFPQMQLSLPSDNSKDNSTCNIEVVKPMDIEESIWSPRFGLKG 360
Query: 361 KIDVTVGVKIHRGYKTKYKIMPLELKTGKESNSIEHRSQVVLYTLLSQERRADPEAGLLL 420
KIDVTVGVKIHRGYKTKYKIMPLELKTGKESNSIEHRSQVVLYTLLSQERRADPEAGLLL
Sbjct: 361 KIDVTVGVKIHRGYKTKYKIMPLELKTGKESNSIEHRSQVVLYTLLSQERRADPEAGLLL 420
Query: 421 YLKTGQMYPVPANHLDKRELLKLRNQMAFSLFHRISKSATRQKTQLASLPQIIEEEKTCK 480
YLKTGQMYPVPANHLDKRELLKLRNQMAFSLFHRISKSATRQKTQLASLPQIIEEEKTCK
Sbjct: 421 YLKTGQMYPVPANHLDKRELLKLRNQMAFSLFHRISKSATRQKTQLASLPQIIEEEKTCK 480
Query: 481 YCSQIGNCALYSRAVEQQMDCSSVPIVMLPKIEEETQHLKQTHLEYFSLWCLMLTLESQS 540
YCSQIGNCALYSRAVEQQMDCSSVPIVMLPKIEEETQHLKQTHLEYFSLWCLMLTLESQS
Sbjct: 481 YCSQIGNCALYSRAVEQQMDCSSVPIVMLPKIEEETQHLKQTHLEYFSLWCLMLTLESQS 540
Query: 541 KDNKKNHQNIWLMPASEMEKSGSCIGNLIRMEHVKIVCDGQYLHNFQCKHGAIPVTNLMA 600
KDNKKNHQNIWLMPASEMEKSGSCIGNLIRMEHVKIVCDGQYLHNFQCKHGAIPVTNLMA
Sbjct: 541 KDNKKNHQNIWLMPASEMEKSGSCIGNLIRMEHVKIVCDGQYLHNFQCKHGAIPVTNLMA 600
Query: 601 GDRVIVSGEERSLFALSRGYVKEINMTTVTCLLDRNLSVLPESTLFRLDQEEKNCDIDTP 660
GDRVIVSGEERSLFALSRGYVKEINMTTVTCLLDRNLSVLPESTLFRLDQEEKNCDIDTP
Sbjct: 601 GDRVIVSGEERSLFALSRGYVKEINMTTVTCLLDRNLSVLPESTLFRLDQEEKNCDIDTP 660
Query: 661 LGNLSKLMENTFVSKKLRDLIIDFREPQFISYLSSVLPHDAKDTVACILKGLNKPQRQAM 720
LGNLSKLMENTFVSKKLRDLIIDFREPQFISYLSSVLPHDAKDTVACILKGLNKPQRQAM
Sbjct: 661 LGNLSKLMENTFVSKKLRDLIIDFREPQFISYLSSVLPHDAKDTVACILKGLNKPQRQAM 720
Query: 721 KKVLLSKDYTLIVGMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAVDNILLKLAKFKI 780
KKVLLSKDYTLIVGMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAVDNILLKLAKFKI
Sbjct: 721 KKVLLSKDYTLIVGMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAVDNILLKLAKFKI 780
Query: 781 GFLRLGQIQKVHPAIQQFTEQEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRK 840
GFLRLGQIQKVHPAIQQFTEQEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRK
Sbjct: 781 GFLRLGQIQKVHPAIQQFTEQEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRK 840
Query: 841 IFDFCIVDEASQISQPICLGPLFFSRRFVLVGDHQQLPPLVLNREARALGMSESLFKRLE 900
IFDFCIVDEASQISQPICLGPLFFSRRFVLVGDHQQLPPLVLNREARALGMSESLFKRLE
Sbjct: 841 IFDFCIVDEASQISQPICLGPLFFSRRFVLVGDHQQLPPLVLNREARALGMSESLFKRLE 900
Query: 901 QNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYA 960
QNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYA
Sbjct: 901 QNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYA 960
Query: 961 DYSDNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSP 1020
DYSDNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSP
Sbjct: 961 DYSDNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSP 1020
Query: 1021 SDIGIIAPYRQQLKIINDLLARSIGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGELL 1080
SDIGIIAPYRQQLKIINDLLARSIGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGELL
Sbjct: 1021 SDIGIIAPYRQQLKIINDLLARSIGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGELL 1080
Query: 1081 KDWRRLNVAITRAKHKLILLGCVPSLNCYPPLEKLLNHLNSEKLIIDLPSREHESLCHIL 1140
KDWRRLNVAITRAKHKLILLGCVPSLNCYPPLEKLLNHLNSEKLIIDLPSREHESLCHIL
Sbjct: 1081 KDWRRLNVAITRAKHKLILLGCVPSLNCYPPLEKLLNHLNSEKLIIDLPSREHESLCHIL 1140
Query: 1141 GDFQRE 1146
GDFQRE
Sbjct: 1141 GDFQRE 1146
>gi|18375673 regulator of nonsense transcripts 1 [Homo sapiens]
Length = 1118
Score = 175 bits (444), Expect = 2e-43
Identities = 137/465 (29%), Positives = 231/465 (49%), Gaps = 74/465 (15%)
Query: 709 LKGLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICTLVRILYACGFS-VLLTSYTHSA 767
L LN Q A+K VL + +LI G PGTGKT T T+V L G VL+ + ++ A
Sbjct: 468 LPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIA 526
Query: 768 VDNILLKLAKFKIGFLRL------------------------------GQIQKVHPAIQQ 797
VD + K+ + + +RL ++Q++ +
Sbjct: 527 VDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGE 586
Query: 798 FTEQEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRKIFDFCIVDEASQISQPI 857
+ + R +++K A E L N+ ++ TC+G P ++ F ++DE++Q ++P
Sbjct: 587 LSSADEKRYRALKRTAERELLMNAD-VICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 645
Query: 858 CLGPLFF-SRRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKSAVVQLTVQYRMN 916
C+ P+ +++ +LVGDH QL P+V+ ++A G+S+SLF+RL ++L VQYRM+
Sbjct: 646 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMH 705
Query: 917 SKIMSLSNKLTYEGKLECG---SDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGVFE 973
+ + + + YEG L+ G +D+V D W +
Sbjct: 706 PALSAFPSNIFYEGSLQNGVTAADRVKKGF--------------------DFQWP----Q 741
Query: 974 PNNPVCFLNTDKVPAPEQVEKGGVS--NVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYR- 1030
P+ P+ F T E++ G S N TEA + +T+ +KAG P IGII PY
Sbjct: 742 PDKPMFFYVTQ---GQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEG 798
Query: 1031 ------QQLKIINDLLARSIGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWR 1084
Q ++ L + VE+ +VD +QGR+K +++S VR+N+ +G L D R
Sbjct: 799 QRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIG-FLNDPR 857
Query: 1085 RLNVAITRAKHKLILLGCVPSLNCYPPLEKLLNHLNSEKLIIDLP 1129
RLNVA+TRA++ +I++G +L+ P LLN+ +K++++ P
Sbjct: 858 RLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGP 902
>gi|119392094 immunoglobulin mu binding protein 2 [Homo sapiens]
Length = 993
Score = 171 bits (433), Expect = 4e-42
Identities = 172/651 (26%), Positives = 288/651 (44%), Gaps = 102/651 (15%)
Query: 532 LMLTLESQSKDNKKNHQNIWLMPASEMEKSGSCIGNLIRMEHVKIVCDGQYLHNFQCKH- 590
L L +++ ++ + +NI L E++ G C+ L ++ + G+ L F+ +
Sbjct: 17 LELERDAEVEERRSWQENISL---KELQSRGVCLLKL-QVSSQRTGLYGRLLVTFEPRRY 72
Query: 591 ---GAIPVTNLMAGDRVIVSGEERSLFALSRGYVKEINMTTVTCLLDRNLSVLPESTLFR 647
A+P + +GD V + L+ G + + +VT D ES F+
Sbjct: 73 GSAAALPSNSFTSGDIVGLYDAANEGSQLATGILTRVTQKSVTVAFD-------ESHDFQ 125
Query: 648 LDQEEKNCDIDTPLGNLSKLMENTFVSKKLRDLIIDFRE------PQFISYL---SSVLP 698
L + +N L KL N ++L+ +I ++ I L S+ P
Sbjct: 126 LSLDRENSY------RLLKLA-NDVTYRRLKKALIALKKYHSGPASSLIEVLFGRSAPSP 178
Query: 699 HDAKDTVACILKGLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICTLVRILYACGFSV 758
+ L+ Q++A+ L K+ +I G PGTGKTTT+ ++ G V
Sbjct: 179 ASEIHPLTFFNTCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKV 238
Query: 759 LLTSYTHSAVDNILLKLAKFKIGFLRLGQIQKVHPAIQQ--------------------- 797
L + ++ AVDN++ +LA K LRLG ++ +IQQ
Sbjct: 239 LCCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRK 298
Query: 798 -----FTEQEICRSKSIKS------------------LALLEELYNSQLIVAT-TCMGIN 833
F + + + K KS A+LE L ++ +++AT T +
Sbjct: 299 DIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASAD 358
Query: 834 HPI--FSRKIFDFCIVDEASQISQPICLGPLFFSRRFVLVGDHQQLPPLVLNREARALGM 891
P+ FD ++DE +Q + C PL +R+ +L GDH+QLPP ++ +A G+
Sbjct: 359 GPLKLLPESYFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGL 418
Query: 892 SESLFKRLEQNKSAVV--QLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHF 949
S SL +RL + A V LTVQYRM+ IM ++ Y G+L S RH
Sbjct: 419 SLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVA-------RHL 471
Query: 950 KDVKLELEFYADYSDNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVS--NVTEAKLIV 1007
D P + E P+ ++T E E+ S N E +L+
Sbjct: 472 ------------LRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVS 519
Query: 1008 FLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLLARSIGMVEVNTVDKYQGRDKSIVLVSF 1067
V AG DI +++PY Q+ ++ L +E+ +VD +QGR+K V++SF
Sbjct: 520 LHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHRHPELEIKSVDGFQGREKEAVILSF 579
Query: 1068 VRSNKDGTVGELLKDWRRLNVAITRAKHKLILLGCVPSLNCYPPLEKLLNH 1118
VRSN+ G VG L +D RR+NVA+TRA+ + ++ ++N + L+ L+ +
Sbjct: 580 VRSNRKGEVGFLAED-RRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEY 629
>gi|14251207 MOV10-like 1 [Homo sapiens]
Length = 1211
Score = 112 bits (281), Expect = 2e-24
Identities = 122/435 (28%), Positives = 203/435 (46%), Gaps = 77/435 (17%)
Query: 712 LNKPQRQAMKKVLLSKDYTL---IVGMPGTGKTTTICTLV-RILYACGFS-VLLTSYTHS 766
LN+ Q+ A+K++L L + G PGTGKT TI V ++ +A S +L+ + ++S
Sbjct: 745 LNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNS 804
Query: 767 AVDNILLKLAKFKIGFLRLGQIQKVHPAIQQFTEQEICRSKSIKSLALL------EELYN 820
A D + L+L + K+ L+ + +V+ CR + I A+ E+++
Sbjct: 805 AADLVCLRLHESKV--LQPATMVRVNAT---------CRFEEIVIDAVKPYCRDGEDIWK 853
Query: 821 SQL--IVATTCM--GINHPIFSRK-IFDFCIVDEASQISQPICLGPLFF----SRRFVLV 871
+ I+ TTC G+ + I R F VDEA Q S+P CL PL S + VL
Sbjct: 854 ASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMSDISGQIVLA 913
Query: 872 GDHQQLPPLVLNREARALGMSESLFKRL-----------------EQNKSAVVQLTVQYR 914
GD QL P++ +R A A G++ S +RL N V +L YR
Sbjct: 914 GDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYR 973
Query: 915 MNSKIMSLSNKLTYEGKLE-CGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGVFE 973
+ ++ L ++L Y +LE C V +++ L F+ E
Sbjct: 974 SHEALLMLPSRLFYHRELEVCADPTVVTSLLGWEKLPKKGFPLIFHGVRGSE-----ARE 1028
Query: 974 PNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQL 1033
+P F + V + L + + + S SDIG+I PYR+Q+
Sbjct: 1029 GKSPSWFNPAEAV---------------QVLRYCCLLAHSISSQVSASDIGVITPYRKQV 1073
Query: 1034 KIINDLLARSIGM--VEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGE-----LLKDWRRL 1086
+ I +L R++ + ++V +V+++QG++ ++++S VRSN+D + L + +R
Sbjct: 1074 EKIR-ILLRNVDLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRF 1132
Query: 1087 NVAITRAKHKLILLG 1101
NVAITR K LI+LG
Sbjct: 1133 NVAITRPKALLIVLG 1147
>gi|113722133 senataxin [Homo sapiens]
Length = 2677
Score = 102 bits (255), Expect = 2e-21
Identities = 97/322 (30%), Positives = 147/322 (45%), Gaps = 62/322 (19%)
Query: 803 ICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRKIFDFCIVDEASQISQPICLGPL 862
IC + S LLE + Q V +C+ IVDEA Q + L PL
Sbjct: 2151 ICCTLSTSGGLLLESAFRGQGGVPFSCV---------------IVDEAGQSCEIETLTPL 2195
Query: 863 FFS-RRFVLVGDHQQLPPLVLNREARALGMSESLFKR----LEQN-------KSAVVQLT 910
+ +LVGD +QLPP V++ +A+ G +S+ R LE+N + ++QLT
Sbjct: 2196 IHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMARFCRLLEENVEHNMISRLPILQLT 2255
Query: 911 VQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMG 970
VQYRM+ I + Y L+ A + +D+ P+L
Sbjct: 2256 VQYRMHPDICLFPSNYVYNRNLKTNRQTEA---------------IRCSSDWPFQPYL-- 2298
Query: 971 VFEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFV--KAGCSPSDIGIIAP 1028
VF+ + E+ + NV E KL++ + + + S +IGII
Sbjct: 2299 VFDVGD-----------GSERRDNDSYINVQEIKLVMEIIKLIKDKRKDVSFRNIGIITH 2347
Query: 1029 YRQQLKIINDLLARSI---GMVEVNTVDKYQGRDKSIVLVSFVRSNK-DGTVGELLKDWR 1084
Y+ Q +I L + G EV+TVD +QGR K V+V+ VR+N G++G L +
Sbjct: 2348 YKAQKTMIQKDLDKEFDRKGPAEVDTVDAFQGRQKDCVIVTCVRANSIQGSIG-FLASLQ 2406
Query: 1085 RLNVAITRAKHKLILLGCVPSL 1106
RLNV ITRAK+ L +LG + +L
Sbjct: 2407 RLNVTITRAKYSLFILGHLRTL 2428
>gi|28626521 zinc finger, NFX1-type containing 1 [Homo sapiens]
Length = 1918
Score = 90.5 bits (223), Expect = 8e-18
Identities = 94/340 (27%), Positives = 155/340 (45%), Gaps = 41/340 (12%)
Query: 795 IQQFTEQEICRSKSIKSLALLEELY---NSQLIVATTCMGINHPIFSRKIFD-FCIVDEA 850
I + Q ++ + L L E+L+ ++Q++ TT + +K+ IV+EA
Sbjct: 949 ILSYERQYRTSAERMAELRLQEDLHILKDAQVVGMTTTGAAKYRQILQKVEPRIVIVEEA 1008
Query: 851 SQISQPICLGPLFFS-RRFVLVGDHQQLPPLVLNRE-ARALGMSESLFKRLEQNKSAVVQ 908
+++ + + L + + +L+GDHQQL P + A+ + SLF+RL + V+
Sbjct: 1009 AEVLEAHTIATLSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVR 1068
Query: 909 LTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWL 968
L Q+RM +I L Y+ S V+ K V L F+ +++
Sbjct: 1069 LNYQHRMCPEIARLLTPHIYQDLENHPS------VLKYEKIKGVSSNL-FFVEHN----- 1116
Query: 969 MGVFEPNNPVCFLNTDKVPAPEQVEKGGVS--NVTEAKLIVFLTSIFVKAGCSPSDIGII 1026
PEQ + G S N EA +V L F+ PS I I+
Sbjct: 1117 -------------------FPEQEIQEGKSHQNQHEAHFVVELCKYFLCQEYLPSQITIL 1157
Query: 1027 APYRQQLKIINDLL-ARSIGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRR 1085
Y QL + L+ A++ V V+ VDKYQG + I+L+S VRSN++G VG L+ R
Sbjct: 1158 TTYTGQLFCLRKLMPAKTFAGVRVHVVDKYQGEENDIILLSLVRSNQEGKVG-FLQISNR 1216
Query: 1086 LNVAITRAKHKLILLGCVPSLNCYPPLEKLLNHLNSEKLI 1125
+ VA++RAK + +G + L P K+++ L I
Sbjct: 1217 ICVALSRAKKGMYCIGNMQMLAKVPLWSKIIHTLRENNQI 1256
Score = 32.0 bits (71), Expect = 3.5
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 712 LNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICTLVRILYA---------CGFSVLLTS 762
L+ Q +A++ L+++ +I G PGTGKT +V+ L F +L+
Sbjct: 598 LDDSQMEALQ-FALTRELAIIQGPPGTGKTYVGLKIVQALLTNESVWQISLQKFPILVVC 656
Query: 763 YTHSAVDNILLKLAKF-KIGFLRLGQIQKVHPAIQQFTEQEICRSKSIK 810
YT+ A+D L + K +R+G + ++QFT +E+ + +
Sbjct: 657 YTNHALDQFLEGIYNCQKTSIVRVGG-RSNSEILKQFTLRELRNKREFR 704
>gi|156105693 PPAR-alpha interacting complex protein 285 isoform 1
[Homo sapiens]
Length = 2649
Score = 90.1 bits (222), Expect = 1e-17
Identities = 93/348 (26%), Positives = 155/348 (44%), Gaps = 43/348 (12%)
Query: 798 FTEQEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRKIFDF--CIVDEASQISQ 855
F+ +++ K + A EL ++I+ T + S KI D +VDEA ++
Sbjct: 2311 FSREDLVWYKKVLWEARKFELDRHEVILCTCSCAASA---SLKILDVRQILVDEAGMATE 2367
Query: 856 PICLGPLFF---SRRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKSAVVQLTVQ 912
P L PL + + VL+GDH+QL P+V N + LG+ SLF+R ++ L Q
Sbjct: 2368 PETLIPLVQFPQAEKVVLLGDHKQLRPVVKNERLQNLGLDRSLFERYHEDAH---MLDTQ 2424
Query: 913 YRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGVF 972
YRM+ I + + Y+ KL+ LR V +A P + G
Sbjct: 2425 YRMHEGICAFPSVAFYKSKLKTWQ--------GLRRPPSVL----GHAGKESCPVIFGHV 2472
Query: 973 EPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLT-SIFVKAGCSPSDIGIIAPYRQ 1031
+ + ++TD + + +N+ E +V +T + + P DI ++ PY
Sbjct: 2473 QGHERSLLVSTD------EGNENSKANLEEVAEVVRITKQLTLGRTVEPQDIAVLTPYNA 2526
Query: 1032 QLKIINDLLAR-SIGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGEL-LKDW------ 1083
Q I+ L R I V V+++ K QG + VLVS VR+ + + K W
Sbjct: 2527 QASEISKALRREGIAGVAVSSITKSQGSEWRYVLVSTVRTCAKSDLDQRPTKSWLKKFLG 2586
Query: 1084 -----RRLNVAITRAKHKLILLGCVPSLNCYPPLEKLLNHLNSEKLII 1126
++NVA+TRA+ L L+G L C P LL+ +++ ++
Sbjct: 2587 FVVDPNQVNVAVTRAQEGLCLIGDHLLLRCCPLWRSLLDFCEAQQTLV 2634
Score = 55.8 bits (133), Expect = 2e-07
Identities = 88/413 (21%), Positives = 163/413 (39%), Gaps = 54/413 (13%)
Query: 731 LIVGMPGTGKTTTICTL-VRILYACGFSVLLTSYTHSAVDNILLKLAKFKIGF------- 782
LI G GTGKT T+ + ++ VL+ ++T+SA D + + +
Sbjct: 541 LIYGPFGTGKTYTLAMASLEVIRRPETKVLICTHTNSAADIYIREYFHSHVSGGHPEATP 600
Query: 783 LRLGQIQKVHPAIQQFTEQEICRSKSIKSLA--LLEELYNSQLIVATTCMG--INHPIFS 838
LR+ + T Q C + ++ EL +++V TT + P+
Sbjct: 601 LRVMYTDRPLSQTDPVTLQYCCLTDDRQAFRPPTRAELARHRVVVTTTSQARELRVPV-- 658
Query: 839 RKIFDFCIVDEASQISQPICLGPLFFSR---RFVLVGDHQQLPPLVLNREARALGMSESL 895
F ++DEA+Q+ + L PL ++ R VL GDH Q+ P + + ARA +L
Sbjct: 659 -GFFSHILIDEAAQMLECEALTPLAYASHGTRLVLAGDHMQVTPRLFS-VARARAAEHTL 716
Query: 896 FKRLEQNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLE 955
R L + Y+ + ++ ++L + C +A+++ +
Sbjct: 717 LHR----------LFLCYQQETHEVARQSRLVFHENYRC-----TDAIVSF-------IS 754
Query: 956 LEFYADYSDNPWLMGVFEP---NNPVCFLNTDKVPAPEQ-----VEKGGVSNVTEAKLIV 1007
FY + G P + P+ F + P + + ++ V E
Sbjct: 755 RHFYVAKGNPIHARGKVPPHPRHYPLMFCHVAGSPDRDMSMASWLNLAEIAQVVEKVQEA 814
Query: 1008 FLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLLARSIGMVEVNTVDKYQGRDKSIVLVSF 1067
+ T G I +++ Q + +L R +G V V + + GR +V++S
Sbjct: 815 YNTWPSCWGGREQRCICVVSHGAQVSALRQELRRRDLGQVSVGSFEILPGRQFRVVVLST 874
Query: 1068 VRS-----NKDGTVGELLKDWRRLNVAITRAKHKLILLGCVPSLNCYPPLEKL 1115
V + + E D R LN +TRA+ +L+++G +L + KL
Sbjct: 875 VHTCQSLLSPGALAPEFFTDARVLNTVLTRAQSQLVVVGDAVALCSFGACGKL 927
>gi|156105695 PPAR-alpha interacting complex protein 285 isoform 2
[Homo sapiens]
Length = 2080
Score = 90.1 bits (222), Expect = 1e-17
Identities = 93/348 (26%), Positives = 155/348 (44%), Gaps = 43/348 (12%)
Query: 798 FTEQEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRKIFDF--CIVDEASQISQ 855
F+ +++ K + A EL ++I+ T + S KI D +VDEA ++
Sbjct: 1742 FSREDLVWYKKVLWEARKFELDRHEVILCTCSCAASA---SLKILDVRQILVDEAGMATE 1798
Query: 856 PICLGPLFF---SRRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKSAVVQLTVQ 912
P L PL + + VL+GDH+QL P+V N + LG+ SLF+R ++ L Q
Sbjct: 1799 PETLIPLVQFPQAEKVVLLGDHKQLRPVVKNERLQNLGLDRSLFERYHEDAH---MLDTQ 1855
Query: 913 YRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGVF 972
YRM+ I + + Y+ KL+ LR V +A P + G
Sbjct: 1856 YRMHEGICAFPSVAFYKSKLKTWQ--------GLRRPPSVL----GHAGKESCPVIFGHV 1903
Query: 973 EPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLT-SIFVKAGCSPSDIGIIAPYRQ 1031
+ + ++TD + + +N+ E +V +T + + P DI ++ PY
Sbjct: 1904 QGHERSLLVSTD------EGNENSKANLEEVAEVVRITKQLTLGRTVEPQDIAVLTPYNA 1957
Query: 1032 QLKIINDLLAR-SIGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGEL-LKDW------ 1083
Q I+ L R I V V+++ K QG + VLVS VR+ + + K W
Sbjct: 1958 QASEISKALRREGIAGVAVSSITKSQGSEWRYVLVSTVRTCAKSDLDQRPTKSWLKKFLG 2017
Query: 1084 -----RRLNVAITRAKHKLILLGCVPSLNCYPPLEKLLNHLNSEKLII 1126
++NVA+TRA+ L L+G L C P LL+ +++ ++
Sbjct: 2018 FVVDPNQVNVAVTRAQEGLCLIGDHLLLRCCPLWRSLLDFCEAQQTLV 2065
Score = 50.4 bits (119), Expect = 9e-06
Identities = 68/317 (21%), Positives = 127/317 (40%), Gaps = 44/317 (13%)
Query: 817 ELYNSQLIVATTCMG--INHPIFSRKIFDFCIVDEASQISQPICLGPLFFSR---RFVLV 871
EL +++V TT + P+ F ++DEA+Q+ + L PL ++ R VL
Sbjct: 68 ELARHRVVVTTTSQARELRVPV---GFFSHILIDEAAQMLECEALTPLAYASHGTRLVLA 124
Query: 872 GDHQQLPPLVLNREARALGMSESLFKRLEQNKSAVVQLTVQYRMNSKIMSLSNKLTYEGK 931
GDH Q+ P + + ARA +L R L + Y+ + ++ ++L +
Sbjct: 125 GDHMQVTPRLFS-VARARAAEHTLLHR----------LFLCYQQETHEVARQSRLVFHEN 173
Query: 932 LECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGVFEP---NNPVCFLNTDKVPA 988
C +A+++ + FY + G P + P+ F + P
Sbjct: 174 YRC-----TDAIVSF-------ISRHFYVAKGNPIHARGKVPPHPRHYPLMFCHVAGSPD 221
Query: 989 PEQ-----VEKGGVSNVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLLARS 1043
+ + ++ V E + T G I +++ Q + +L R
Sbjct: 222 RDMSMASWLNLAEIAQVVEKVQEAYNTWPSCWGGREQRCICVVSHGAQVSALRQELRRRD 281
Query: 1044 IGMVEVNTVDKYQGRDKSIVLVSFVRS-----NKDGTVGELLKDWRRLNVAITRAKHKLI 1098
+G V V + + GR +V++S V + + E D R LN +TRA+ +L+
Sbjct: 282 LGQVSVGSFEILPGRQFRVVVLSTVHTCQSLLSPGALAPEFFTDARVLNTVLTRAQSQLV 341
Query: 1099 LLGCVPSLNCYPPLEKL 1115
++G +L + KL
Sbjct: 342 VVGDAVALCSFGACGKL 358
>gi|194272168 Mov10, Moloney leukemia virus 10, homolog [Homo sapiens]
Length = 1003
Score = 85.5 bits (210), Expect = 3e-16
Identities = 111/455 (24%), Positives = 196/455 (43%), Gaps = 66/455 (14%)
Query: 696 VLPHDAKDTVACILKGLNKPQRQAMKKVLLSKDYT---LIVGMPGTGKTTTICTLVR--I 750
+LP D K + N Q QAM+ ++ +I G PGTGKT T+ ++ +
Sbjct: 483 LLPSDVKLKLYDRSLESNPEQLQAMRHIVTGTTRPAPYIIFGPPGTGKTVTLVEAIKQVV 542
Query: 751 LYACGFSVLLTSYTHSAVDNILLKL-AKFKIGFLRL----GQIQKVHPAIQQFTEQEICR 805
+ +L + ++S D + +L RL I+ V I+ + +
Sbjct: 543 KHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYRLLAPSRDIRMVPEDIKPCCNWDAKK 602
Query: 806 SKSIKSLALLEELYNSQLIVATTCMGINHPIFSRKIFDFCIVDEASQISQP---ICLGPL 862
+ + + Y + T + F F +DEA +P + + L
Sbjct: 603 GEYVFPAKKKLQEYRVLITTLITAGRLVSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGL 662
Query: 863 FFSR-------RFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKSA---------- 905
+ + VL GD +QL P++ + + G+ SL +RL S
Sbjct: 663 MEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKHGLGYSLLERLLTYNSLYKKGPDGYDP 722
Query: 906 --VVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYS 963
+ +L YR + I+ + N+L YEG+L+ +D V R + L + +
Sbjct: 723 QFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDRE----RFCRWAGLPRQGFPIIF 778
Query: 964 DNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVSNVTE-AKLIVFLTSIFVKAGCSPSD 1022
E N+P F PE+ + VT KL++ +S KA SP
Sbjct: 779 HGVMGKDEREGNSPSFF-------NPEEA-----ATVTSYLKLLLAPSSKKGKARLSPRS 826
Query: 1023 IGIIAPYRQQLKIINDLLAR---------SIGMVEVNTVDKYQGRDKSIVLVSFVRSNK- 1072
+G+I+PYR+Q++ I + + I ++V +V+++QG+++S++L+S VRS++
Sbjct: 827 VGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQS 886
Query: 1073 ------DGTVGELLKDWRRLNVAITRAKHKLILLG 1101
D +G LK+ +R NVA+TRAK LI++G
Sbjct: 887 FVQLDLDFNLG-FLKNPKRFNVAVTRAKALLIIVG 920
>gi|14211540 Mov10, Moloney leukemia virus 10, homolog [Homo sapiens]
Length = 1003
Score = 85.5 bits (210), Expect = 3e-16
Identities = 111/455 (24%), Positives = 196/455 (43%), Gaps = 66/455 (14%)
Query: 696 VLPHDAKDTVACILKGLNKPQRQAMKKVLLSKDYT---LIVGMPGTGKTTTICTLVR--I 750
+LP D K + N Q QAM+ ++ +I G PGTGKT T+ ++ +
Sbjct: 483 LLPSDVKLKLYDRSLESNPEQLQAMRHIVTGTTRPAPYIIFGPPGTGKTVTLVEAIKQVV 542
Query: 751 LYACGFSVLLTSYTHSAVDNILLKL-AKFKIGFLRL----GQIQKVHPAIQQFTEQEICR 805
+ +L + ++S D + +L RL I+ V I+ + +
Sbjct: 543 KHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYRLLAPSRDIRMVPEDIKPCCNWDAKK 602
Query: 806 SKSIKSLALLEELYNSQLIVATTCMGINHPIFSRKIFDFCIVDEASQISQP---ICLGPL 862
+ + + Y + T + F F +DEA +P + + L
Sbjct: 603 GEYVFPAKKKLQEYRVLITTLITAGRLVSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGL 662
Query: 863 FFSR-------RFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKSA---------- 905
+ + VL GD +QL P++ + + G+ SL +RL S
Sbjct: 663 MEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKHGLGYSLLERLLTYNSLYKKGPDGYDP 722
Query: 906 --VVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYS 963
+ +L YR + I+ + N+L YEG+L+ +D V R + L + +
Sbjct: 723 QFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDRE----RFCRWAGLPRQGFPIIF 778
Query: 964 DNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVSNVTE-AKLIVFLTSIFVKAGCSPSD 1022
E N+P F PE+ + VT KL++ +S KA SP
Sbjct: 779 HGVMGKDEREGNSPSFF-------NPEEA-----ATVTSYLKLLLAPSSKKGKARLSPRS 826
Query: 1023 IGIIAPYRQQLKIINDLLAR---------SIGMVEVNTVDKYQGRDKSIVLVSFVRSNK- 1072
+G+I+PYR+Q++ I + + I ++V +V+++QG+++S++L+S VRS++
Sbjct: 827 VGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQS 886
Query: 1073 ------DGTVGELLKDWRRLNVAITRAKHKLILLG 1101
D +G LK+ +R NVA+TRAK LI++G
Sbjct: 887 FVQLDLDFNLG-FLKNPKRFNVAVTRAKALLIIVG 920
>gi|38788372 aquarius [Homo sapiens]
Length = 1485
Score = 81.3 bits (199), Expect = 5e-15
Identities = 97/348 (27%), Positives = 152/348 (43%), Gaps = 60/348 (17%)
Query: 788 IQKVHPAIQQFTEQEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRKI------ 841
I+K+ +++F E+ RS +S LL + I+A TC H R
Sbjct: 1001 IKKIFTQLEEFRASELLRSGLDRSKYLLVK---EAKIIAMTC---THAALKRHDLVKLGF 1054
Query: 842 -FDFCIVDEASQISQPICLGPLF-------FSR--RFVLVGDHQQLPPLVLNREARALG- 890
+D +++EA+QI + PL FSR R++++GDH QLPP++ N +
Sbjct: 1055 KYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKRWIMIGDHHQLPPVIKNMAFQKYSN 1114
Query: 891 MSESLFKRLEQNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFK 950
M +SLF R + V L Q R + + +L N Y+ NL +
Sbjct: 1115 MEQSLFTRFVRVGVPTVDLDAQGRARASLCNLYN-WRYK---------------NLGNLP 1158
Query: 951 DVKLELEFYADYSDNPWLMGVFEPNNPVCFLNT-DKVPAPEQVEKGGVSNVTEAKLIVFL 1009
V+L EF + N L+ F+ N F + P P + N+ EA+ +V L
Sbjct: 1159 HVQLLPEFS---TANAGLLYDFQLINVEDFQGVGESEPNPYFYQ-----NLGEAEYVVAL 1210
Query: 1010 TSIFVKAGCSPSDIGIIAPYRQQLKIINDLLARSIGMV-------EVNTVDKYQGRDKSI 1062
G I I+ Y Q +I D++ R G +V TVD++QG+
Sbjct: 1211 FMYMCLLGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQGQQNDY 1270
Query: 1063 VLVSFVRSNKDGTVGELLKDWRRLNVAITRAKHKLILLGCVPSL-NCY 1109
+L+S VR+ G L+D RRL VA++RA+ L + V NC+
Sbjct: 1271 ILLSLVRTRAVGH----LRDVRRLVVAMSRARLGLYIFARVSLFQNCF 1314
Score = 31.2 bits (69), Expect = 5.9
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 730 TLIVGMPGTGKTTTICTLVRILYACGF---SVLLTSYTHSAVDNILLKLAKFKIG---FL 783
T++VG PGTGKT ++ +Y F L+ ++++ A++ + K+ I L
Sbjct: 819 TMVVGPPGTGKTDVAVQIISNIYH-NFPEQRTLIVTHSNQALNQLFEKIMALDIDERHLL 877
Query: 784 RLGQIQKVHPAIQQFTEQEICRSKSIKSLALLEELYNSQ 822
RLG ++ + F+ + + LLEE+ Q
Sbjct: 878 RLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQ 916
>gi|54792138 helicase with zinc finger domain [Homo sapiens]
Length = 1942
Score = 80.1 bits (196), Expect = 1e-14
Identities = 107/440 (24%), Positives = 184/440 (41%), Gaps = 82/440 (18%)
Query: 712 LNKPQRQAMKKVL----LSKDYTLIVGMPGTGKTTTICTLVR-ILYACGFSVLLTSYTHS 766
LN Q++A+ + + LI+G GTGKT T+ V+ IL +L+ ++++S
Sbjct: 642 LNAKQKEAVLAITTPLAIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQETRILICTHSNS 701
Query: 767 AVDNILLKLAKFKIGFLRLGQ--------------IQKVHPAIQQFTEQEICRSKSIKSL 812
A D L + + ++ G ++ VHP + Q+ I + S +
Sbjct: 702 AAD---LYIKDYLHPYVEAGNPQARPLRVYFRNRWVKTVHPVVHQYCL--ISSAHSTFQM 756
Query: 813 ALLEELYNSQLIVAT--TCMGINHPIFSRKIFDFCIVDEASQISQPICLGPLFFSR---R 867
E++ +++V T T + F ++DEA+Q + + PL + R
Sbjct: 757 PQKEDILKHRVVVVTLNTSQYLCQLDLEPGFFTHILLDEAAQAMECETIMPLALATQNTR 816
Query: 868 FVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKSAV----VQLTVQYRMNSKIMSLS 923
VL GDH QL P V + AR + SL RL ++ A + L YR + I++ +
Sbjct: 817 IVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYT 876
Query: 924 NKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGVFEPNNPVCFLNT 983
++L YEGKL + A+ KD L F+ ++ V E N+ + N
Sbjct: 877 SELFYEGKLMASGKQPAH--------KDF-YPLTFFTARGED-----VQEKNSTAFYNNA 922
Query: 984 DKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQL-KIINDLLAR 1042
+ E+VE+ K V + IG++ PY Q+ +I +L +
Sbjct: 923 EVFEVVERVEE------LRRKWPVAWGKL------DDGSIGVVTPYADQVFRIRAELRKK 970
Query: 1043 SIGMVEVNTVDKYQGRDKSIVLVSFVR---------------------SNKDGTVGELLK 1081
+ V V V QG+ ++ +S VR S +D G L
Sbjct: 971 RLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDSTEDLDYG-FLS 1029
Query: 1082 DWRRLNVAITRAKHKLILLG 1101
+++ LN AITRA+ + ++G
Sbjct: 1030 NYKLLNTAITRAQSLVAVVG 1049
>gi|198442844 dynein, axonemal, heavy chain 10 [Homo sapiens]
Length = 4471
Score = 34.7 bits (78), Expect = 0.53
Identities = 64/297 (21%), Positives = 125/297 (42%), Gaps = 39/297 (13%)
Query: 869 VLVGDHQQLPPLVLNRE----ARALGMSESLFKRLEQNKSAVVQLTVQYRMNSKIMSLSN 924
V+V D QQ+ ++L E A+ L ++ +L + QL+ QY + + +L +
Sbjct: 1957 VIVPDLQQICEIMLFSEGFLEAKTLAKKMTVLYKLARE-----QLSKQYHYDFGLRALKS 2011
Query: 925 KLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGVFEPNNPVCFLNTD 984
L G+L+ GS + V+ +R +D+ L +F + D P +G+ P
Sbjct: 2012 VLVMAGELKRGSSDLREDVVLMRALRDMNLP-KFV--FEDVPLFLGLISDLFPGLDCPRV 2068
Query: 985 KVP----APEQV-EKGG--VSNVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIIN 1037
+ P A EQV E+ G V + K++ ++ + ++ P R ++
Sbjct: 2069 RYPDFNDAVEQVLEENGYAVLPIQVDKVVQMFETMLTR-----HTTMVVGPTRGGKSVVI 2123
Query: 1038 DLLARSIGMVEVNTVDKYQGRDKSIVLVSFV----RSNKDGTVGELLKDWRRLNVAITRA 1093
+ L ++ + + T Y K++ ++ + +D T G L +R +N +
Sbjct: 2124 NTLCQAQTKLGL-TTKLYILNPKAVSVIELYGILDPTTRDWTDGVLSNIFREINKPTDKK 2182
Query: 1094 KHKLILLG------CVPSLNCYPPLEKLLNHLNSEKLIIDLPSREHESLCHILGDFQ 1144
+ K IL V ++N +LL N E++ + + H +L +GD Q
Sbjct: 2183 ERKYILFDGDVDALWVENMNSVMDDNRLLTLANGERIRL----QAHCALLFEVGDLQ 2235
>gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens]
Length = 4624
Score = 34.7 bits (78), Expect = 0.53
Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 36/148 (24%)
Query: 644 TLFRLDQEE--KNCDIDTPLGNLSKLM--------------ENTFVSKKLRDL----IID 683
TL++L +E+ K D L N+ ++ E+T V + LRD+ +ID
Sbjct: 2136 TLYKLCEEQLSKQVHYDFGLRNILSVLRTLGAAKRANPMDTESTIVMRVLRDMNLSKLID 2195
Query: 684 FREPQFISYLSSVLPHDAKDTV------ACILK-----GLNKPQRQAMKKVLLSKDYTLI 732
EP F+S + + P+ D A I + GL +K + L + +
Sbjct: 2196 EDEPLFLSLIEDLFPNILLDKAGYPELEAAISRQVEEAGLINHPPWKLKVIQLFETQRVR 2255
Query: 733 VGM-----PGTGKTTTICTLVRILYACG 755
GM G GKTT I TL+R + CG
Sbjct: 2256 HGMMTLGPSGAGKTTCIHTLMRAMTDCG 2283
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 32.3 bits (72), Expect = 2.6
Identities = 60/291 (20%), Positives = 114/291 (39%), Gaps = 33/291 (11%)
Query: 264 KLQELAFQTIQEIRHLKEMYRLNLSQDEIKQEVEDYLPSFCKWAGDFMHKNTSTDFPQMQ 323
KLQ+ Q HLKE LS ++ +E+E + K D + S +
Sbjct: 696 KLQDKQEHCSQLESHLKEYKEKYLSLEQKTEELEGQIK---KLEADSLEVKASKEQALQD 752
Query: 324 LSLPSDNSKDNSTCNIEVVKPMDIE-ESIWSPRFGLKGKIDVTVGVKIHRGYKTKYK-IM 381
L + D E+ K +++E E + S R L+ K + +K + + K I+
Sbjct: 753 LQQQRQLNTDLELRATELSKQLEMEKEIVSSTRLDLQKKSEALESIKQKLTKQEEEKQIL 812
Query: 382 PLELKTGKESNSIEHR--SQVVLYTLLSQERRADPEAGLLLYLKTGQMYPVPANHLDKRE 439
+ +T + I+H + + T+ ++ + L+ L T K +
Sbjct: 813 KQDFETLSQETKIQHEELNNRIQTTVTELQKVKMEKEALMTELSTV-----------KDK 861
Query: 440 LLKLRNQMAFSLFHRISKSATRQKTQLASLPQIIEEEKTCKYCSQIGNCALYSRAVEQQM 499
L K+ + + + SKS ++ Q I++ EKTCK + + EQ+
Sbjct: 862 LSKVSDSL------KNSKSEFEKENQKGKAA-ILDLEKTCKELKHQLQVQMENTLKEQKE 914
Query: 500 DCSSVPIVMLPKIEEETQHLKQTHLEYFSLWCLMLTLESQSKDNKKNHQNI 550
+ +E+E + Q LE S+ ++ ++ K N+K Q +
Sbjct: 915 --------LKKSLEKEKEASHQLKLELNSMQEQLIQAQNTLKQNEKEEQQL 957
>gi|70980531 GGA binding partner [Homo sapiens]
Length = 441
Score = 31.6 bits (70), Expect = 4.5
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 13/116 (11%)
Query: 439 ELLKLRNQMAFSLFHRISKSATRQKTQLASLPQIIEEEKTCKYC----SQIGNCALYSRA 494
ELL ++Q + K ++K + A + Q E+++ + C Q AL S A
Sbjct: 249 ELLNAQHQRLLEMLDT-EKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAA 307
Query: 495 VEQQMDCSSVPIVMLPKIEEETQHLKQTHLEYFSLWCLMLTLESQSKDNKKNHQNI 550
+++ +V +L +EEE ++L++ H E LW +KD +K Q I
Sbjct: 308 ---KLEKEAVKDAVLKVVEEERKNLEKAHAEERELW-----KTEHAKDQEKVSQEI 355
>gi|105990532 apolipoprotein B precursor [Homo sapiens]
Length = 4563
Score = 31.2 bits (69), Expect = 5.9
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 250 EVFQKAINNSFAPEKLQELA------FQTIQE-IRHLKEM---YRLNLSQDEIKQEVEDY 299
EVF KAI + E L+ L FQ I++ I+ LKEM Y +N QDEI DY
Sbjct: 4282 EVF-KAIQSLKTTEVLRNLQDLLQFIFQLIEDNIKQLKEMKFTYLINYIQDEINTIFSDY 4340
Query: 300 LP 301
+P
Sbjct: 4341 IP 4342
>gi|239756892 PREDICTED: hypothetical protein [Homo sapiens]
Length = 576
Score = 30.8 bits (68), Expect = 7.7
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 2 KTPCIPSPKQGS-----KGRGQSPAAQVRGPTWNAPAREGRPGAGHLGHLRVGACARGAQ 56
K C P +GS +GRGQ A RG N+ +R G+ AG H R G G
Sbjct: 143 KGVCPHHPGKGSAGPSRRGRGQR-AKGFRGSEMNSESRRGQTAAGREKHPRAGCSGEGET 201
Query: 57 ARAF 60
++
Sbjct: 202 GASY 205
>gi|239751388 PREDICTED: hypothetical protein XP_002347834 [Homo
sapiens]
Length = 404
Score = 30.8 bits (68), Expect = 7.7
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 2 KTPCIPSPKQGS-----KGRGQSPAAQVRGPTWNAPAREGRPGAGHLGHLRVGACARGAQ 56
K C P +GS +GRGQ A RG N+ +R G+ AG H R G G
Sbjct: 143 KGVCPHHPGKGSAGPSRRGRGQR-AKGFRGSEMNSESRRGQTAAGREKHPRAGCSGEGET 201
Query: 57 ARAF 60
++
Sbjct: 202 GASY 205
>gi|239745895 PREDICTED: hypothetical protein XP_002343612 [Homo
sapiens]
Length = 404
Score = 30.8 bits (68), Expect = 7.7
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 2 KTPCIPSPKQGS-----KGRGQSPAAQVRGPTWNAPAREGRPGAGHLGHLRVGACARGAQ 56
K C P +GS +GRGQ A RG N+ +R G+ AG H R G G
Sbjct: 143 KGVCPHHPGKGSAGPSRRGRGQR-AKGFRGSEMNSESRRGQTAAGREKHPRAGCSGEGET 201
Query: 57 ARAF 60
++
Sbjct: 202 GASY 205
>gi|55741661 hypothetical protein LOC57653 [Homo sapiens]
Length = 1646
Score = 30.8 bits (68), Expect = 7.7
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 254 KAINNSFAPEKLQELAFQTIQEIRHLKEMYRLNLS--QDEIKQEVEDYLPSFCKWAGDFM 311
+ + ++ PEK+ FQ ++ H ++ Y L+ Q+EI Q ++ P G F+
Sbjct: 293 RGLMDTIVPEKISTSTFQ--RQAEHKRKSYESALASFQEEIAQVGKEMEPLIVDTGGLFL 350
Query: 312 HKNTSTDFPQMQLSLPSDNSKDNSTCNIEVV 342
K T +D +L L +N + I+ +
Sbjct: 351 KKLTESDEEMNRLFLKVENDTNLEDYTIQAL 381
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,130,949
Number of Sequences: 37866
Number of extensions: 1855499
Number of successful extensions: 4986
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4927
Number of HSP's gapped (non-prelim): 44
length of query: 1146
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1033
effective length of database: 13,968,660
effective search space: 14429625780
effective search space used: 14429625780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.