Guide to the Human Genome
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Search of human proteins with 29294645

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo
sapiens]
         (116 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]   249   3e-67
gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]   249   3e-67
gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]   249   3e-67
gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo sapiens]   112   6e-26
gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s...    64   2e-11
gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s...    64   2e-11
gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo ...    64   2e-11
gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens]       57   3e-09
gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens]     52   1e-07
gi|187761331 lymphocyte antigen 6 complex, locus E [Homo sapiens]      45   9e-06
gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens]        45   9e-06
gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens]               42   1e-04
gi|29294643 secreted Ly6/uPAR related protein 2 isoform b [Homo ...    40   4e-04
gi|4504033 glycosylphosphatidylinositol anchored molecule like p...    39   7e-04
gi|187829185 CD59 antigen preproprotein [Homo sapiens]                 39   9e-04
gi|187829183 CD59 antigen preproprotein [Homo sapiens]                 39   9e-04
gi|10835165 CD59 antigen preproprotein [Homo sapiens]                  39   9e-04
gi|42716299 CD59 antigen preproprotein [Homo sapiens]                  39   9e-04
gi|187829070 CD59 antigen preproprotein [Homo sapiens]                 39   9e-04
gi|42761474 CD59 antigen preproprotein [Homo sapiens]                  39   9e-04
gi|42716302 CD59 antigen preproprotein [Homo sapiens]                  39   9e-04
gi|187828910 CD59 antigen preproprotein [Homo sapiens]                 39   9e-04
gi|34996523 LY6/PLAUR domain containing 6 [Homo sapiens]               39   0.001
gi|40255210 LY6/PLAUR domain containing 6B [Homo sapiens]              37   0.004
gi|208431840 lymphocyte antigen 6 complex, locus H isoform b [Ho...    36   0.006
gi|208431838 lymphocyte antigen 6 complex, locus H isoform a [Ho...    36   0.006
gi|194440697 lymphocyte antigen 6 complex, locus H isoform b [Ho...    36   0.006
gi|9966907 ARS component B precursor [Homo sapiens]                    36   0.006
gi|239757302 PREDICTED: similar to R28379_1 [Homo sapiens]             34   0.022
gi|239751807 PREDICTED: similar to R28379_1 [Homo sapiens]             34   0.022

>gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
          Length = 116

 Score =  249 bits (636), Expect = 3e-67
 Identities = 116/116 (100%), Positives = 116/116 (100%)

Query: 1   MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKV 60
           MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKV
Sbjct: 1   MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKV 60

Query: 61  SKSCVPRCFETVYDGYSKHASTTSCCQYDLCNGTGLATPATLALAPILLATLWGLL 116
           SKSCVPRCFETVYDGYSKHASTTSCCQYDLCNGTGLATPATLALAPILLATLWGLL
Sbjct: 61  SKSCVPRCFETVYDGYSKHASTTSCCQYDLCNGTGLATPATLALAPILLATLWGLL 116


>gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
          Length = 116

 Score =  249 bits (636), Expect = 3e-67
 Identities = 116/116 (100%), Positives = 116/116 (100%)

Query: 1   MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKV 60
           MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKV
Sbjct: 1   MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKV 60

Query: 61  SKSCVPRCFETVYDGYSKHASTTSCCQYDLCNGTGLATPATLALAPILLATLWGLL 116
           SKSCVPRCFETVYDGYSKHASTTSCCQYDLCNGTGLATPATLALAPILLATLWGLL
Sbjct: 61  SKSCVPRCFETVYDGYSKHASTTSCCQYDLCNGTGLATPATLALAPILLATLWGLL 116


>gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
          Length = 116

 Score =  249 bits (636), Expect = 3e-67
 Identities = 116/116 (100%), Positives = 116/116 (100%)

Query: 1   MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKV 60
           MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKV
Sbjct: 1   MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKV 60

Query: 61  SKSCVPRCFETVYDGYSKHASTTSCCQYDLCNGTGLATPATLALAPILLATLWGLL 116
           SKSCVPRCFETVYDGYSKHASTTSCCQYDLCNGTGLATPATLALAPILLATLWGLL
Sbjct: 61  SKSCVPRCFETVYDGYSKHASTTSCCQYDLCNGTGLATPATLALAPILLATLWGLL 116


>gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo
          sapiens]
          Length = 131

 Score =  112 bits (280), Expect = 6e-26
 Identities = 51/51 (100%), Positives = 51/51 (100%)

Query: 1  MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRT 51
          MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRT
Sbjct: 1  MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRT 51


>gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
           sapiens]
          Length = 190

 Score = 64.3 bits (155), Expect = 2e-11
 Identities = 45/120 (37%), Positives = 61/120 (50%), Gaps = 8/120 (6%)

Query: 1   MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKV 60
           M  LL L+L+  +   LAQAL CHVC    ++C + + C     YC+ TR   +P  + V
Sbjct: 1   MRLLLVLLLLAAVCAALAQALHCHVCC-GHEHCESLVECAPTDKYCVITRA-TSPGGILV 58

Query: 61  SKSCVPRCFETVYDGYSKHASTTSCCQYDLCNGTGLA----TPATLALAPILLATLWGLL 116
            KSC P C  +     S+ A + SCCQ   CN +  A    +P TL  A I  + LW LL
Sbjct: 59  MKSCSPTCPNSTVSSDSR-ALSVSCCQGSQCNRSAAAGLVGSPGTL-WASIAASQLWALL 116


>gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
           sapiens]
          Length = 190

 Score = 64.3 bits (155), Expect = 2e-11
 Identities = 45/120 (37%), Positives = 61/120 (50%), Gaps = 8/120 (6%)

Query: 1   MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKV 60
           M  LL L+L+  +   LAQAL CHVC    ++C + + C     YC+ TR   +P  + V
Sbjct: 1   MRLLLVLLLLAAVCAALAQALHCHVCC-GHEHCESLVECAPTDKYCVITRA-TSPGGILV 58

Query: 61  SKSCVPRCFETVYDGYSKHASTTSCCQYDLCNGTGLA----TPATLALAPILLATLWGLL 116
            KSC P C  +     S+ A + SCCQ   CN +  A    +P TL  A I  + LW LL
Sbjct: 59  MKSCSPTCPNSTVSSDSR-ALSVSCCQGSQCNRSAAAGLVGSPGTL-WASIAASQLWALL 116


>gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo
           sapiens]
          Length = 190

 Score = 64.3 bits (155), Expect = 2e-11
 Identities = 45/120 (37%), Positives = 61/120 (50%), Gaps = 8/120 (6%)

Query: 1   MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKV 60
           M  LL L+L+  +   LAQAL CHVC    ++C + + C     YC+ TR   +P  + V
Sbjct: 1   MRLLLVLLLLAAVCAALAQALHCHVCC-GHEHCESLVECAPTDKYCVITRA-TSPGGILV 58

Query: 61  SKSCVPRCFETVYDGYSKHASTTSCCQYDLCNGTGLA----TPATLALAPILLATLWGLL 116
            KSC P C  +     S+ A + SCCQ   CN +  A    +P TL  A I  + LW LL
Sbjct: 59  MKSCSPTCPNSTVSSDSR-ALSVSCCQGSQCNRSAAAGLVGSPGTL-WASIAASQLWALL 116


>gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens]
          Length = 128

 Score = 57.0 bits (136), Expect = 3e-09
 Identities = 43/124 (34%), Positives = 54/124 (43%), Gaps = 13/124 (10%)

Query: 1   MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKV 60
           M   L L+  + +    A  L CHVC  +  NC + + CPA   +C TT T        V
Sbjct: 1   MRTALLLLAALAVATGPALTLRCHVCT-SSSNCKHSVVCPASSRFCKTTNTVEPLRGNLV 59

Query: 61  SKSCVPRCFE--TVYDGYSKHASTTSCCQYDLCN---------GTGLATPA-TLALAPIL 108
            K C   C    T+    S   S+T CCQ DLCN          T LA  A +L LA  L
Sbjct: 60  KKDCAESCTPSYTLQGQVSSGTSSTQCCQEDLCNEKLHNAAPTRTALAHSALSLGLALSL 119

Query: 109 LATL 112
           LA +
Sbjct: 120 LAVI 123


>gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens]
          Length = 123

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 36/120 (30%), Positives = 49/120 (40%), Gaps = 7/120 (5%)

Query: 1   MTPLLTLILVVLMGLPLAQALDCHVCA--YNGDNCFNPMRCPAMVAYCMTTRTYYTPTRM 58
           M  +L  +L+  + L    AL C+ C    + ++C     C  +   C T R        
Sbjct: 1   MKAVLLALLMAGLALQPGTALLCYSCKAQVSNEDCLQVENCTQLGEQCWTARIRAVGLLT 60

Query: 59  KVSKSCVPRCFETVYDGYSKHASTTSCCQYDLCNGTGL----ATPATLALAPILLATLWG 114
            +SK C   C +   D Y    + T CC  DLCN +G        A LAL P L   LWG
Sbjct: 61  VISKGCSLNCVDDSQDYYVGKKNIT-CCDTDLCNASGAHALQPAAAILALLPALGLLLWG 119


>gi|187761331 lymphocyte antigen 6 complex, locus E [Homo sapiens]
          Length = 131

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 15/129 (11%)

Query: 1   MTPLLTLILVVLMGLPLAQALDCHVCAYNGDN--CFNPMRCPAMVAYCMTTRTYYTPTRM 58
           M   L ++L  L+G+  A +L C  C     N  C  P  C     YC+T         +
Sbjct: 1   MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60

Query: 59  -----KVSKSCVPRCFETVYDGYSKHASTT--SCCQYDLCNGT----GLATPATLALAPI 107
                 +SK+C P C   + +G +   ++   SCCQ  LCN +    GL    TL  A +
Sbjct: 61  VTFGHSLSKTCSPAC--PIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGL 118

Query: 108 LLATLWGLL 116
           LL+ L  LL
Sbjct: 119 LLSLLPALL 127


>gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens]
          Length = 131

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 15/129 (11%)

Query: 1   MTPLLTLILVVLMGLPLAQALDCHVCAYNGDN--CFNPMRCPAMVAYCMTTRTYYTPTRM 58
           M   L ++L  L+G+  A +L C  C     N  C  P  C     YC+T         +
Sbjct: 1   MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL 60

Query: 59  -----KVSKSCVPRCFETVYDGYSKHASTT--SCCQYDLCNGT----GLATPATLALAPI 107
                 +SK+C P C   + +G +   ++   SCCQ  LCN +    GL    TL  A +
Sbjct: 61  VTFGHSLSKTCSPAC--PIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGL 118

Query: 108 LLATLWGLL 116
           LL+ L  LL
Sbjct: 119 LLSLLPALL 127


>gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens]
          Length = 125

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 36/121 (29%), Positives = 46/121 (38%), Gaps = 8/121 (6%)

Query: 2   TPLLTLILVVLMGLPLAQALDCHVCAY--NGDNCFNPMRCPAMVAYCMTTR-----TYYT 54
           T L  L LV+     LA AL C+VC       +C     C      C TT       Y  
Sbjct: 4   TRLALLALVLAACGELAPALRCYVCPEPTGVSDCVTIATCTTNETMCKTTLYSREIVYPF 63

Query: 55  PTRMKVSKSCVPRCFETVYDGYSKHASTTSCCQYDLCNGTGLATPATLALAPILLATLWG 114
                V+KSC  +C  +  DG  +     SCC  +LCN  G     +L    + L  L  
Sbjct: 64  QGDSTVTKSCASKCKPSDVDGIGQ-TLPVSCCNTELCNVDGAPALNSLHCGALTLLPLLS 122

Query: 115 L 115
           L
Sbjct: 123 L 123


>gi|29294643 secreted Ly6/uPAR related protein 2 isoform b [Homo
          sapiens]
          Length = 97

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 5  LTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYY---TPTRMKVS 61
          L L  V+ + L  A+A+ CH C   G  C +  RC     +C+TT T     T     V+
Sbjct: 7  LLLAAVLSLQLAAAEAIWCHQCTGFG-GCSHGSRCLRDSTHCVTTATRVLSNTEDLPLVT 65

Query: 62 KSCVPRCFETVYDGYSKHASTTSCCQYDLCN 92
          K C   C +    G   + S  +CCQ  LCN
Sbjct: 66 KMCHIGCPDIPSLGLGPYVSI-ACCQTSLCN 95


>gi|4504033 glycosylphosphatidylinositol anchored molecule like
           protein [Homo sapiens]
          Length = 158

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 34/114 (29%), Positives = 42/114 (36%), Gaps = 22/114 (19%)

Query: 4   LLTLILVVLMGLPLAQA-----------LDCHVCAYNGD-NCFNPMRCPAMVAYCMTTRT 51
           +L   L++ M LPL  A           L CH CA   D NC N   CP  +  CMT   
Sbjct: 1   MLLFALLLAMELPLVAASATMRAQWTYSLRCHDCAVINDFNCPNIRVCPYHIRRCMTISI 60

Query: 52  YYTPTRMKVSKSCVPRC-----FETVYDGYSKHASTTS-----CCQYDLCNGTG 95
                 + V K+C   C      E   +   K   T S     CC   +CN  G
Sbjct: 61  RINSRELLVYKNCTNNCTFVYAAEQPPEAPGKIFKTNSFYWVCCCNSMVCNAGG 114


>gi|187829185 CD59 antigen preproprotein [Homo sapiens]
          Length = 128

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 16/123 (13%)

Query: 4   LLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKVSKS 63
           L  L+LV+ +      +L C+ C     +C   + C +    C+ T+       ++V   
Sbjct: 9   LFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKA-----GLQVYNK 63

Query: 64  C--VPRC-FETVYDGYSKHASTTSCCQYDLCN--------GTGLATPATLALAPILLATL 112
           C     C F  V     ++  T  CC+ DLCN        GT L+    L L    LA  
Sbjct: 64  CWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFLAAA 123

Query: 113 WGL 115
           W L
Sbjct: 124 WSL 126


>gi|187829183 CD59 antigen preproprotein [Homo sapiens]
          Length = 128

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 16/123 (13%)

Query: 4   LLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKVSKS 63
           L  L+LV+ +      +L C+ C     +C   + C +    C+ T+       ++V   
Sbjct: 9   LFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKA-----GLQVYNK 63

Query: 64  C--VPRC-FETVYDGYSKHASTTSCCQYDLCN--------GTGLATPATLALAPILLATL 112
           C     C F  V     ++  T  CC+ DLCN        GT L+    L L    LA  
Sbjct: 64  CWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFLAAA 123

Query: 113 WGL 115
           W L
Sbjct: 124 WSL 126


>gi|10835165 CD59 antigen preproprotein [Homo sapiens]
          Length = 128

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 16/123 (13%)

Query: 4   LLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKVSKS 63
           L  L+LV+ +      +L C+ C     +C   + C +    C+ T+       ++V   
Sbjct: 9   LFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKA-----GLQVYNK 63

Query: 64  C--VPRC-FETVYDGYSKHASTTSCCQYDLCN--------GTGLATPATLALAPILLATL 112
           C     C F  V     ++  T  CC+ DLCN        GT L+    L L    LA  
Sbjct: 64  CWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFLAAA 123

Query: 113 WGL 115
           W L
Sbjct: 124 WSL 126


>gi|42716299 CD59 antigen preproprotein [Homo sapiens]
          Length = 128

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 16/123 (13%)

Query: 4   LLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKVSKS 63
           L  L+LV+ +      +L C+ C     +C   + C +    C+ T+       ++V   
Sbjct: 9   LFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKA-----GLQVYNK 63

Query: 64  C--VPRC-FETVYDGYSKHASTTSCCQYDLCN--------GTGLATPATLALAPILLATL 112
           C     C F  V     ++  T  CC+ DLCN        GT L+    L L    LA  
Sbjct: 64  CWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFLAAA 123

Query: 113 WGL 115
           W L
Sbjct: 124 WSL 126


>gi|187829070 CD59 antigen preproprotein [Homo sapiens]
          Length = 128

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 16/123 (13%)

Query: 4   LLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKVSKS 63
           L  L+LV+ +      +L C+ C     +C   + C +    C+ T+       ++V   
Sbjct: 9   LFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKA-----GLQVYNK 63

Query: 64  C--VPRC-FETVYDGYSKHASTTSCCQYDLCN--------GTGLATPATLALAPILLATL 112
           C     C F  V     ++  T  CC+ DLCN        GT L+    L L    LA  
Sbjct: 64  CWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFLAAA 123

Query: 113 WGL 115
           W L
Sbjct: 124 WSL 126


>gi|42761474 CD59 antigen preproprotein [Homo sapiens]
          Length = 128

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 16/123 (13%)

Query: 4   LLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKVSKS 63
           L  L+LV+ +      +L C+ C     +C   + C +    C+ T+       ++V   
Sbjct: 9   LFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKA-----GLQVYNK 63

Query: 64  C--VPRC-FETVYDGYSKHASTTSCCQYDLCN--------GTGLATPATLALAPILLATL 112
           C     C F  V     ++  T  CC+ DLCN        GT L+    L L    LA  
Sbjct: 64  CWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFLAAA 123

Query: 113 WGL 115
           W L
Sbjct: 124 WSL 126


>gi|42716302 CD59 antigen preproprotein [Homo sapiens]
          Length = 128

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 16/123 (13%)

Query: 4   LLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKVSKS 63
           L  L+LV+ +      +L C+ C     +C   + C +    C+ T+       ++V   
Sbjct: 9   LFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKA-----GLQVYNK 63

Query: 64  C--VPRC-FETVYDGYSKHASTTSCCQYDLCN--------GTGLATPATLALAPILLATL 112
           C     C F  V     ++  T  CC+ DLCN        GT L+    L L    LA  
Sbjct: 64  CWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFLAAA 123

Query: 113 WGL 115
           W L
Sbjct: 124 WSL 126


>gi|187828910 CD59 antigen preproprotein [Homo sapiens]
          Length = 128

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 16/123 (13%)

Query: 4   LLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKVSKS 63
           L  L+LV+ +      +L C+ C     +C   + C +    C+ T+       ++V   
Sbjct: 9   LFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKA-----GLQVYNK 63

Query: 64  C--VPRC-FETVYDGYSKHASTTSCCQYDLCN--------GTGLATPATLALAPILLATL 112
           C     C F  V     ++  T  CC+ DLCN        GT L+    L L    LA  
Sbjct: 64  CWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFLAAA 123

Query: 113 WGL 115
           W L
Sbjct: 124 WSL 126


>gi|34996523 LY6/PLAUR domain containing 6 [Homo sapiens]
          Length = 171

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 16/90 (17%)

Query: 16  PLAQALDCHVCAYNGDN--CFN---PMRCPAMVAYCMTTRTY-YTPTRMKVSKSCVPR-- 67
           P      C  C    DN  C      + CP    YC T  T   T   + V+K CVP   
Sbjct: 42  PYPGGFKCFTCEKAADNYECNRWAPDIYCPRETRYCYTQHTMEVTGNSISVTKRCVPLEE 101

Query: 68  -----CFETVYDGYSKHASTTSCCQYDLCN 92
                C ++ ++G   H   TSCC+ ++CN
Sbjct: 102 CLSTGCRDSEHEG---HKVCTSCCEGNICN 128


>gi|40255210 LY6/PLAUR domain containing 6B [Homo sapiens]
          Length = 207

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 14/89 (15%)

Query: 16  PLAQALDCHVCAYNGDNCFNPMR------CPAMVAYCMTTRTYYTPTRM-KVSKSCVPRC 68
           P   +  C  C   GDN +N  R      CP    YC+T   + +  R   ++K C  R 
Sbjct: 79  PFPNSFKCFTCENAGDN-YNCNRWAEDKWCPQNTQYCLTVHHFTSHGRSTSITKKCASRS 137

Query: 69  FETVYDGY-----SKHASTTSCCQYDLCN 92
            E  + G      S+H    SCC+  +CN
Sbjct: 138 -ECHFVGCHHSRDSEHTECRSCCEGMICN 165


>gi|208431840 lymphocyte antigen 6 complex, locus H isoform b [Homo
           sapiens]
          Length = 161

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 17/123 (13%)

Query: 5   LTLILVVLMGLPLAQALDCHVCAY--NGDNCFNPMRCPAMVAYCMTTRTYYTPTRMK--- 59
           L L+ V+L   P A  L C  C    N  +C  P +C      C + R     +  K   
Sbjct: 32  LALLAVLLCSAP-AHGLWCQDCTLTTNSSHC-TPKQCQPSDTVCASVRITDPSSSRKDHS 89

Query: 60  VSKSCVPRC-------FETVYDGYSKHAST---TSCCQYDLCNGTGLATPATLALAPILL 109
           V+K C   C       F     G+           CC+ DLCNG   A  +  ALA  LL
Sbjct: 90  VNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSPWALAGGLL 149

Query: 110 ATL 112
            +L
Sbjct: 150 LSL 152


>gi|208431838 lymphocyte antigen 6 complex, locus H isoform a [Homo
           sapiens]
          Length = 140

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 17/123 (13%)

Query: 5   LTLILVVLMGLPLAQALDCHVCAY--NGDNCFNPMRCPAMVAYCMTTRTYYTPTRMK--- 59
           L L+ V+L   P A  L C  C    N  +C  P +C      C + R     +  K   
Sbjct: 11  LALLAVLLCSAP-AHGLWCQDCTLTTNSSHC-TPKQCQPSDTVCASVRITDPSSSRKDHS 68

Query: 60  VSKSCVPRC-------FETVYDGYSKHAST---TSCCQYDLCNGTGLATPATLALAPILL 109
           V+K C   C       F     G+           CC+ DLCNG   A  +  ALA  LL
Sbjct: 69  VNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSPWALAGGLL 128

Query: 110 ATL 112
            +L
Sbjct: 129 LSL 131


>gi|194440697 lymphocyte antigen 6 complex, locus H isoform b [Homo
           sapiens]
          Length = 161

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 17/123 (13%)

Query: 5   LTLILVVLMGLPLAQALDCHVCAY--NGDNCFNPMRCPAMVAYCMTTRTYYTPTRMK--- 59
           L L+ V+L   P A  L C  C    N  +C  P +C      C + R     +  K   
Sbjct: 32  LALLAVLLCSAP-AHGLWCQDCTLTTNSSHC-TPKQCQPSDTVCASVRITDPSSSRKDHS 89

Query: 60  VSKSCVPRC-------FETVYDGYSKHAST---TSCCQYDLCNGTGLATPATLALAPILL 109
           V+K C   C       F     G+           CC+ DLCNG   A  +  ALA  LL
Sbjct: 90  VNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSPWALAGGLL 149

Query: 110 ATL 112
            +L
Sbjct: 150 LSL 152


>gi|9966907 ARS component B precursor [Homo sapiens]
          Length = 103

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 7   LILVVLMGLPLAQALDCHVC--AYNGDNCFNPMRCPAMVAYCMTT-----RTYYTPTRMK 59
           L+LV    +   +AL C+ C       +C    RC      CMTT       Y       
Sbjct: 9   LLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPV 68

Query: 60  VSKSCVPRCFETVYDGYSKHASTTSCCQYDLCN 92
           V++SC   C  T  D     A    CC  DLCN
Sbjct: 69  VTRSCSSSCVATDPDSIGA-AHLIFCCFRDLCN 100


>gi|239757302 PREDICTED: similar to R28379_1 [Homo sapiens]
          Length = 204

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 11/110 (10%)

Query: 2   TPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMR-CPAMVAYCMTT---RTYYTPTR 57
           T LL  +L+  + L L   L C +C   G  C   M+ C +    C+      T      
Sbjct: 9   TFLLAFVLLCTL-LGLGCPLHCEICTAAGSRCHGQMKTCSSDKDTCVLLVGKATSKGKEL 67

Query: 58  MKVSKSCVPR--CFETVYD---GYSKHASTTS-CCQYDLCNGTGLATPAT 101
           +   K C+    C+  V     G   H  T+S CCQ D CN   L+ P T
Sbjct: 68  VHTYKGCIRSQDCYSGVISTTMGPKDHMVTSSFCCQSDGCNSAFLSVPLT 117


>gi|239751807 PREDICTED: similar to R28379_1 [Homo sapiens]
          Length = 204

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 11/110 (10%)

Query: 2   TPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMR-CPAMVAYCMTT---RTYYTPTR 57
           T LL  +L+  + L L   L C +C   G  C   M+ C +    C+      T      
Sbjct: 9   TFLLAFVLLCTL-LGLGCPLHCEICTAAGSRCHGQMKTCSSDKDTCVLLVGKATSKGKEL 67

Query: 58  MKVSKSCVPR--CFETVYD---GYSKHASTTS-CCQYDLCNGTGLATPAT 101
           +   K C+    C+  V     G   H  T+S CCQ D CN   L+ P T
Sbjct: 68  VHTYKGCIRSQDCYSGVISTTMGPKDHMVTSSFCCQSDGCNSAFLSVPLT 117


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.137    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,589,673
Number of Sequences: 37866
Number of extensions: 181326
Number of successful extensions: 556
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 89
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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