Search of human proteins with 28173554

Search of human proteins with 28173554

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|28173554 histone cluster 3, H2bb [Homo sapiens]
         (126 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|28173554 histone cluster 3, H2bb [Homo sapiens]                    246   3e-66
gi|16306566 histone cluster 1, H2bo [Homo sapiens]                    241   1e-64
gi|4504269 histone cluster 1, H2bh [Homo sapiens]                     241   1e-64
gi|4504261 histone cluster 1, H2bn [Homo sapiens]                     240   2e-64
gi|10800140 histone cluster 1, H2bb [Homo sapiens]                    240   2e-64
gi|4504277 histone cluster 2, H2be [Homo sapiens]                     239   3e-64
gi|238624110 histone cluster 2, H2bf isoform b [Homo sapiens]         239   4e-64
gi|66912162 histone cluster 2, H2bf isoform a [Homo sapiens]          239   4e-64
gi|10800138 histone cluster 1, H2bd [Homo sapiens]                    239   4e-64
gi|20336752 histone cluster 1, H2bd [Homo sapiens]                    239   4e-64
gi|21396484 histone cluster 1, H2be [Homo sapiens]                    239   4e-64
gi|4504265 histone cluster 1, H2bf [Homo sapiens]                     239   4e-64
gi|4504257 histone cluster 1, H2bg [Homo sapiens]                     239   4e-64
gi|21166389 histone cluster 1, H2bc [Homo sapiens]                    239   4e-64
gi|4504271 histone cluster 1, H2bi [Homo sapiens]                     239   4e-64
gi|20336754 histone cluster 1, H2bj [Homo sapiens]                    238   7e-64
gi|18105048 histone cluster 1, H2bk [Homo sapiens]                    238   9e-64
gi|4504259 histone cluster 1, H2bl [Homo sapiens]                     237   2e-63
gi|4504263 histone cluster 1, H2bm [Homo sapiens]                     234   1e-62
gi|24586679 histone cluster 1, H2ba [Homo sapiens]                    208   8e-55
gi|169217174 PREDICTED: H2B histone family, member M [Homo sapiens]    98   2e-21
gi|169216381 PREDICTED: H2B histone family, member M [Homo sapiens]    98   2e-21
gi|169216635 PREDICTED: H2B histone family, member M [Homo sapiens]    98   2e-21
gi|50897288 H2B histone family, member W, testis-specific [Homo ...    97   2e-21
gi|169217181 PREDICTED: similar to RAB40A, member RAS oncogene f...    40   6e-04
gi|169216368 PREDICTED: similar to RAB40A, member RAS oncogene f...    40   6e-04
gi|169216631 PREDICTED: similar to RAB40A, member RAS oncogene f...    40   6e-04
gi|65786661 BTB (POZ) domain containing 11 isoform a [Homo sapiens]    35   0.020
gi|206725450 TAF12 RNA polymerase II, TATA box binding protein (...    34   0.034
gi|5032153 TAF12 RNA polymerase II, TATA box binding protein (TB...    34   0.034

>gi|28173554 histone cluster 3, H2bb [Homo sapiens]
          Length = 126

 Score =  246 bits (629), Expect = 3e-66
 Identities = 126/126 (100%), Positives = 126/126 (100%)

Query: 1   MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAM 60
           MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAM
Sbjct: 1   MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAM 60

Query: 61  GIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVT 120
           GIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  GIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 121 KYTSSK 126
           KYTSSK
Sbjct: 121 KYTSSK 126


>gi|16306566 histone cluster 1, H2bo [Homo sapiens]
          Length = 126

 Score =  241 bits (615), Expect = 1e-64
 Identities = 122/126 (96%), Positives = 124/126 (98%)

Query: 1   MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAM 60
           MPDP+KSAPAPKKGSKKAVTKAQKKDGKKRKR RKESYSIYVYKVLKQVHPDTGISSKAM
Sbjct: 1   MPDPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM 60

Query: 61  GIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVT 120
           GIMNSFVNDIFERIA EASRLAHYNKRSTITSRE+QTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 121 KYTSSK 126
           KYTSSK
Sbjct: 121 KYTSSK 126


>gi|4504269 histone cluster 1, H2bh [Homo sapiens]
          Length = 126

 Score =  241 bits (614), Expect = 1e-64
 Identities = 121/126 (96%), Positives = 124/126 (98%)

Query: 1   MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAM 60
           MPDP+KSAPAPKKGSKKAVTKAQKKDGKKRKR RKESYS+YVYKVLKQVHPDTGISSKAM
Sbjct: 1   MPDPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60

Query: 61  GIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVT 120
           GIMNSFVNDIFERIA EASRLAHYNKRSTITSRE+QTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 121 KYTSSK 126
           KYTSSK
Sbjct: 121 KYTSSK 126


>gi|4504261 histone cluster 1, H2bn [Homo sapiens]
          Length = 126

 Score =  240 bits (613), Expect = 2e-64
 Identities = 121/126 (96%), Positives = 124/126 (98%)

Query: 1   MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAM 60
           MP+PSKSAPAPKKGSKKAVTKAQKKDGKKRKR RKESYS+YVYKVLKQVHPDTGISSKAM
Sbjct: 1   MPEPSKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60

Query: 61  GIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVT 120
           GIMNSFVNDIFERIA EASRLAHYNKRSTITSRE+QTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 121 KYTSSK 126
           KYTSSK
Sbjct: 121 KYTSSK 126


>gi|10800140 histone cluster 1, H2bb [Homo sapiens]
          Length = 126

 Score =  240 bits (613), Expect = 2e-64
 Identities = 121/126 (96%), Positives = 124/126 (98%)

Query: 1   MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAM 60
           MP+PSKSAPAPKKGSKKA+TKAQKKDGKKRKR RKESYSIYVYKVLKQVHPDTGISSKAM
Sbjct: 1   MPEPSKSAPAPKKGSKKAITKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM 60

Query: 61  GIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVT 120
           GIMNSFVNDIFERIA EASRLAHYNKRSTITSRE+QTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 121 KYTSSK 126
           KYTSSK
Sbjct: 121 KYTSSK 126


>gi|4504277 histone cluster 2, H2be [Homo sapiens]
          Length = 126

 Score =  239 bits (611), Expect = 3e-64
 Identities = 121/126 (96%), Positives = 124/126 (98%)

Query: 1   MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAM 60
           MP+P+KSAPAPKKGSKKAVTKAQKKDGKKRKR RKESYSIYVYKVLKQVHPDTGISSKAM
Sbjct: 1   MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM 60

Query: 61  GIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVT 120
           GIMNSFVNDIFERIA EASRLAHYNKRSTITSRE+QTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 121 KYTSSK 126
           KYTSSK
Sbjct: 121 KYTSSK 126


>gi|238624110 histone cluster 2, H2bf isoform b [Homo sapiens]
          Length = 134

 Score =  239 bits (610), Expect = 4e-64
 Identities = 120/126 (95%), Positives = 123/126 (97%)

Query: 1   MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAM 60
           MPDP+KSAPAPKKGSKKAVTK QKKDGKKRKR RKESYS+YVYKVLKQVHPDTGISSKAM
Sbjct: 1   MPDPAKSAPAPKKGSKKAVTKVQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60

Query: 61  GIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVT 120
           GIMNSFVNDIFERIA EASRLAHYNKRSTITSRE+QTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 121 KYTSSK 126
           KYTSSK
Sbjct: 121 KYTSSK 126


>gi|66912162 histone cluster 2, H2bf isoform a [Homo sapiens]
          Length = 126

 Score =  239 bits (610), Expect = 4e-64
 Identities = 120/126 (95%), Positives = 123/126 (97%)

Query: 1   MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAM 60
           MPDP+KSAPAPKKGSKKAVTK QKKDGKKRKR RKESYS+YVYKVLKQVHPDTGISSKAM
Sbjct: 1   MPDPAKSAPAPKKGSKKAVTKVQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60

Query: 61  GIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVT 120
           GIMNSFVNDIFERIA EASRLAHYNKRSTITSRE+QTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 121 KYTSSK 126
           KYTSSK
Sbjct: 121 KYTSSK 126


>gi|10800138 histone cluster 1, H2bd [Homo sapiens]
          Length = 126

 Score =  239 bits (610), Expect = 4e-64
 Identities = 120/126 (95%), Positives = 124/126 (98%)

Query: 1   MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAM 60
           MP+P+KSAPAPKKGSKKAVTKAQKKDGKKRKR RKESYS+YVYKVLKQVHPDTGISSKAM
Sbjct: 1   MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60

Query: 61  GIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVT 120
           GIMNSFVNDIFERIA EASRLAHYNKRSTITSRE+QTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 121 KYTSSK 126
           KYTSSK
Sbjct: 121 KYTSSK 126


>gi|20336752 histone cluster 1, H2bd [Homo sapiens]
          Length = 126

 Score =  239 bits (610), Expect = 4e-64
 Identities = 120/126 (95%), Positives = 124/126 (98%)

Query: 1   MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAM 60
           MP+P+KSAPAPKKGSKKAVTKAQKKDGKKRKR RKESYS+YVYKVLKQVHPDTGISSKAM
Sbjct: 1   MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60

Query: 61  GIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVT 120
           GIMNSFVNDIFERIA EASRLAHYNKRSTITSRE+QTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 121 KYTSSK 126
           KYTSSK
Sbjct: 121 KYTSSK 126


>gi|21396484 histone cluster 1, H2be [Homo sapiens]
          Length = 126

 Score =  239 bits (610), Expect = 4e-64
 Identities = 120/126 (95%), Positives = 124/126 (98%)

Query: 1   MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAM 60
           MP+P+KSAPAPKKGSKKAVTKAQKKDGKKRKR RKESYS+YVYKVLKQVHPDTGISSKAM
Sbjct: 1   MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60

Query: 61  GIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVT 120
           GIMNSFVNDIFERIA EASRLAHYNKRSTITSRE+QTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 121 KYTSSK 126
           KYTSSK
Sbjct: 121 KYTSSK 126


>gi|4504265 histone cluster 1, H2bf [Homo sapiens]
          Length = 126

 Score =  239 bits (610), Expect = 4e-64
 Identities = 120/126 (95%), Positives = 124/126 (98%)

Query: 1   MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAM 60
           MP+P+KSAPAPKKGSKKAVTKAQKKDGKKRKR RKESYS+YVYKVLKQVHPDTGISSKAM
Sbjct: 1   MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60

Query: 61  GIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVT 120
           GIMNSFVNDIFERIA EASRLAHYNKRSTITSRE+QTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 121 KYTSSK 126
           KYTSSK
Sbjct: 121 KYTSSK 126


>gi|4504257 histone cluster 1, H2bg [Homo sapiens]
          Length = 126

 Score =  239 bits (610), Expect = 4e-64
 Identities = 120/126 (95%), Positives = 124/126 (98%)

Query: 1   MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAM 60
           MP+P+KSAPAPKKGSKKAVTKAQKKDGKKRKR RKESYS+YVYKVLKQVHPDTGISSKAM
Sbjct: 1   MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60

Query: 61  GIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVT 120
           GIMNSFVNDIFERIA EASRLAHYNKRSTITSRE+QTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 121 KYTSSK 126
           KYTSSK
Sbjct: 121 KYTSSK 126


>gi|21166389 histone cluster 1, H2bc [Homo sapiens]
          Length = 126

 Score =  239 bits (610), Expect = 4e-64
 Identities = 120/126 (95%), Positives = 124/126 (98%)

Query: 1   MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAM 60
           MP+P+KSAPAPKKGSKKAVTKAQKKDGKKRKR RKESYS+YVYKVLKQVHPDTGISSKAM
Sbjct: 1   MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60

Query: 61  GIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVT 120
           GIMNSFVNDIFERIA EASRLAHYNKRSTITSRE+QTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 121 KYTSSK 126
           KYTSSK
Sbjct: 121 KYTSSK 126


>gi|4504271 histone cluster 1, H2bi [Homo sapiens]
          Length = 126

 Score =  239 bits (610), Expect = 4e-64
 Identities = 120/126 (95%), Positives = 124/126 (98%)

Query: 1   MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAM 60
           MP+P+KSAPAPKKGSKKAVTKAQKKDGKKRKR RKESYS+YVYKVLKQVHPDTGISSKAM
Sbjct: 1   MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60

Query: 61  GIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVT 120
           GIMNSFVNDIFERIA EASRLAHYNKRSTITSRE+QTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 121 KYTSSK 126
           KYTSSK
Sbjct: 121 KYTSSK 126


>gi|20336754 histone cluster 1, H2bj [Homo sapiens]
          Length = 126

 Score =  238 bits (608), Expect = 7e-64
 Identities = 120/126 (95%), Positives = 124/126 (98%)

Query: 1   MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAM 60
           MP+P+KSAPAPKKGSKKAVTKAQKKDGKKRKR RKESYSIYVYKVLKQVHPDTGISSKAM
Sbjct: 1   MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM 60

Query: 61  GIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVT 120
           GIMNSFVNDIFERIA EASRLAHYNKRSTITSRE+QTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 121 KYTSSK 126
           KYTS+K
Sbjct: 121 KYTSAK 126


>gi|18105048 histone cluster 1, H2bk [Homo sapiens]
          Length = 126

 Score =  238 bits (607), Expect = 9e-64
 Identities = 119/126 (94%), Positives = 124/126 (98%)

Query: 1   MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAM 60
           MP+P+KSAPAPKKGSKKAVTKAQKKDGKKRKR RKESYS+YVYKVLKQVHPDTGISSKAM
Sbjct: 1   MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60

Query: 61  GIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVT 120
           GIMNSFVNDIFERIA EASRLAHYNKRSTITSRE+QTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 121 KYTSSK 126
           KYTS+K
Sbjct: 121 KYTSAK 126


>gi|4504259 histone cluster 1, H2bl [Homo sapiens]
          Length = 126

 Score =  237 bits (604), Expect = 2e-63
 Identities = 120/126 (95%), Positives = 124/126 (98%)

Query: 1   MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAM 60
           MP+ +KSAPAPKKGSKKAVTKAQKKDGKKRKR RKESYS+YVYKVLKQVHPDTGISSKAM
Sbjct: 1   MPELAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60

Query: 61  GIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVT 120
           GIMNSFVNDIFERIASEASRLAHYNKRSTITSRE+QTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  GIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 121 KYTSSK 126
           KYTSSK
Sbjct: 121 KYTSSK 126


>gi|4504263 histone cluster 1, H2bm [Homo sapiens]
          Length = 126

 Score =  234 bits (597), Expect = 1e-62
 Identities = 117/126 (92%), Positives = 121/126 (96%)

Query: 1   MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAM 60
           MP+P KSAP PKKGSKKA+ KAQKKDGKKRKR RKESYS+YVYKVLKQVHPDTGISSKAM
Sbjct: 1   MPEPVKSAPVPKKGSKKAINKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60

Query: 61  GIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVT 120
           GIMNSFVNDIFERIA EASRLAHYNKRSTITSRE+QTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 121 KYTSSK 126
           KYTSSK
Sbjct: 121 KYTSSK 126


>gi|24586679 histone cluster 1, H2ba [Homo sapiens]
          Length = 127

 Score =  208 bits (530), Expect = 8e-55
 Identities = 109/127 (85%), Positives = 115/127 (90%), Gaps = 1/127 (0%)

Query: 1   MPD-PSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKA 59
           MP+  SK A   KKG KKAV K QKK+GKKRKR RKESYSIY+YKVLKQVHPDTGISSKA
Sbjct: 1   MPEVSSKGATISKKGFKKAVVKTQKKEGKKRKRTRKESYSIYIYKVLKQVHPDTGISSKA 60

Query: 60  MGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAV 119
           M IMNSFV DIFERIASEASRLAHY+KRSTI+SRE+QTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 61  MSIMNSFVTDIFERIASEASRLAHYSKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAV 120

Query: 120 TKYTSSK 126
           TKYTSSK
Sbjct: 121 TKYTSSK 127


>gi|169217174 PREDICTED: H2B histone family, member M [Homo sapiens]
          Length = 248

 Score = 97.8 bits (242), Expect = 2e-21
 Identities = 54/130 (41%), Positives = 83/130 (63%), Gaps = 14/130 (10%)

Query: 3   DPSKSAPAPKKGSKKAVTKAQKKD-----GKKRKRGRK------ESYSIYVYKVLKQVHP 51
           +  +S   PK+ +    TKAQK+      G +R+   +      +S++ Y  +VLKQVH 
Sbjct: 111 EEGQSIQEPKEANS---TKAQKQKRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHX 167

Query: 52  DTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHA 111
              +S +A+ +M+S ++DI +RIA+EA +LAHY KR TITSR++Q AVRLLLPG++ K A
Sbjct: 168 GLSLSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLA 227

Query: 112 VSEGTKAVTK 121
            ++GT A  +
Sbjct: 228 EAQGTNAALR 237


>gi|169216381 PREDICTED: H2B histone family, member M [Homo sapiens]
          Length = 257

 Score = 97.8 bits (242), Expect = 2e-21
 Identities = 54/130 (41%), Positives = 83/130 (63%), Gaps = 14/130 (10%)

Query: 3   DPSKSAPAPKKGSKKAVTKAQKKD-----GKKRKRGRK------ESYSIYVYKVLKQVHP 51
           +  +S   PK+ +    TKAQK+      G +R+   +      +S++ Y  +VLKQVH 
Sbjct: 120 EEGQSIQEPKEANS---TKAQKQKRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHQ 176

Query: 52  DTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHA 111
              +S +A+ +M+S ++DI +RIA+EA +LAHY KR TITSR++Q AVRLLLPG++ K A
Sbjct: 177 GLSLSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLA 236

Query: 112 VSEGTKAVTK 121
            ++GT A  +
Sbjct: 237 EAQGTNAALR 246


>gi|169216635 PREDICTED: H2B histone family, member M [Homo sapiens]
          Length = 257

 Score = 97.8 bits (242), Expect = 2e-21
 Identities = 54/130 (41%), Positives = 83/130 (63%), Gaps = 14/130 (10%)

Query: 3   DPSKSAPAPKKGSKKAVTKAQKKD-----GKKRKRGRK------ESYSIYVYKVLKQVHP 51
           +  +S   PK+ +    TKAQK+      G +R+   +      +S++ Y  +VLKQVH 
Sbjct: 120 EEGQSIQEPKEANS---TKAQKQKRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHQ 176

Query: 52  DTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHA 111
              +S +A+ +M+S ++DI +RIA+EA +LAHY KR TITSR++Q AVRLLLPG++ K A
Sbjct: 177 GLSLSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLA 236

Query: 112 VSEGTKAVTK 121
            ++GT A  +
Sbjct: 237 EAQGTNAALR 246


>gi|50897288 H2B histone family, member W, testis-specific [Homo
           sapiens]
          Length = 175

 Score = 97.4 bits (241), Expect = 2e-21
 Identities = 54/117 (46%), Positives = 75/117 (64%), Gaps = 11/117 (9%)

Query: 16  KKAVTKAQKKDGKKRKRGRK-----------ESYSIYVYKVLKQVHPDTGISSKAMGIMN 64
           K+A +   +K  K+RKRGR            +S++ Y  +VLKQVH    +S +A+ +M+
Sbjct: 48  KEANSTTSQKQSKQRKRGRHGPRRCHSNCRGDSFATYFRRVLKQVHQGLSLSREAVSVMD 107

Query: 65  SFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTK 121
           S V+DI +RIA+EA  LA   KR TIT+ E + AVRLLLPG++ K A SEGTKAV +
Sbjct: 108 SLVHDILDRIATEAGHLARSTKRQTITAWETRMAVRLLLPGQMGKLAESEGTKAVLR 164


>gi|169217181 PREDICTED: similar to RAB40A, member RAS oncogene
          family [Homo sapiens]
          Length = 224

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIASEA 78
          VLKQ HPD   +   +GIMN F+ DIFE I ++A
Sbjct: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64


>gi|169216368 PREDICTED: similar to RAB40A, member RAS oncogene
          family [Homo sapiens]
          Length = 224

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIASEA 78
          VLKQ HPD   +   +GIMN F+ DIFE I ++A
Sbjct: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64


>gi|169216631 PREDICTED: similar to RAB40A, member RAS oncogene
          family [Homo sapiens]
          Length = 224

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 45 VLKQVHPDTGISSKAMGIMNSFVNDIFERIASEA 78
          VLKQ HPD   +   +GIMN F+ DIFE I ++A
Sbjct: 31 VLKQFHPDISTTLNFLGIMNDFLIDIFEHITTKA 64


>gi|65786661 BTB (POZ) domain containing 11 isoform a [Homo sapiens]
          Length = 1104

 Score = 34.7 bits (78), Expect = 0.020
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 54  GISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVS 113
           G+   A+  +++ V+    RIA EA RL+   + +  T  E+Q+A+ ++L   LA H  +
Sbjct: 123 GLPKDALAKLSTLVSRALVRIAKEAQRLSL--RFAKCTKYEIQSAMEIVLSWGLAAHCTA 180

Query: 114 EGTKAVTKYTSS 125
               A++ Y  S
Sbjct: 181 AALAALSLYNMS 192


>gi|206725450 TAF12 RNA polymerase II, TATA box binding protein
           (TBP)-associated factor, 20 kD [Homo sapiens]
          Length = 161

 Score = 33.9 bits (76), Expect = 0.034
 Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 3/98 (3%)

Query: 2   PDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKV---LKQVHPDTGISSK 58
           P+P+ + P     +  AV K     G   +   + +  +   K+   +++V P+  +   
Sbjct: 20  PEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQLDED 79

Query: 59  AMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQ 96
              ++    +D  E + + A +LA + K ST+  ++VQ
Sbjct: 80  VEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQ 117


>gi|5032153 TAF12 RNA polymerase II, TATA box binding protein
           (TBP)-associated factor, 20 kD [Homo sapiens]
          Length = 161

 Score = 33.9 bits (76), Expect = 0.034
 Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 3/98 (3%)

Query: 2   PDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKV---LKQVHPDTGISSK 58
           P+P+ + P     +  AV K     G   +   + +  +   K+   +++V P+  +   
Sbjct: 20  PEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQLDED 79

Query: 59  AMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQ 96
              ++    +D  E + + A +LA + K ST+  ++VQ
Sbjct: 80  VEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQ 117


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.309    0.123    0.328 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,118,629
Number of Sequences: 37866
Number of extensions: 141731
Number of successful extensions: 925
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 812
Number of HSP's gapped (non-prelim): 132
length of query: 126
length of database: 18,247,518
effective HSP length: 90
effective length of query: 36
effective length of database: 14,839,578
effective search space: 534224808
effective search space used: 534224808
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.