Guide to the Human Genome
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Name: HIST1H2BA Sequence: fasta or formatted (127aa) NCBI GI: 24586679
Description:

histone cluster 1, H2ba

Referenced in:

Histones, Related Proteins, and Modifying Enzymes
Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         10           1
 C cysteine            0.0          0           0
 D aspartate           1.6          2           1
 E glutamate           6.3          8           1
 F phenylalanine       2.4          3           1
 G glycine             4.7          6           1
 H histidine           2.4          3           1
 I isoleucine          7.1          9           1
 K lysine             15.7         20           2
 L leucine             4.7          6           3
 M methionine          2.4          3           1
 N asparagine          0.8          1           1
 P proline             2.4          3           1
 Q glutamine           2.4          3           1
 R arginine            6.3          8           1
 S serine             14.2         18           2
 T threonine           7.9         10           1
 V valine              7.1          9           2
 W tryptophan          0.0          0           0
 Y tyrosine            3.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   histone cluster 1, H2ba 
HIST1H2BL             0.849   histone cluster 1, H2bl 
HIST1H2BN             0.844   histone cluster 1, H2bn 
HIST1H2BB             0.844   histone cluster 1, H2bb 
HIST2H2BE             0.839   histone cluster 2, H2be 
HIST3H2BB             0.839   histone cluster 3, H2bb 
HIST1H2BD             0.839   histone cluster 1, H2bd 
HIST1H2BD             0.839   histone cluster 1, H2bd 
HIST1H2BE             0.839   histone cluster 1, H2be 
HIST1H2BF             0.839   histone cluster 1, H2bf 
HIST1H2BG             0.839   histone cluster 1, H2bg 
HIST1H2BC             0.839   histone cluster 1, H2bc 
HIST1H2BI             0.839   histone cluster 1, H2bi 
HIST1H2BJ             0.835   histone cluster 1, H2bj 
HIST1H2BO             0.835   histone cluster 1, H2bo 
HIST2H2BF             0.835   histone cluster 2, H2bf isoform b 
HIST2H2BF             0.835   histone cluster 2, H2bf isoform a 
HIST1H2BK             0.835   histone cluster 1, H2bk 
HIST1H2BH             0.835   histone cluster 1, H2bh 
HIST1H2BM             0.835   histone cluster 1, H2bm 
H2BFM                 0.330   PREDICTED: H2B histone family, member M 
H2BFM                 0.330   PREDICTED: H2B histone family, member M 
H2BFM                 0.330   PREDICTED: H2B histone family, member M 
H2BFWT                0.321   H2B histone family, member W, testis-specific 
LOC100129702          0.060   PREDICTED: similar to RAB40A, member RAS oncogene f...
LOC100129702          0.060   PREDICTED: similar to RAB40A, member RAS oncogene f...
LOC100129702          0.060   PREDICTED: similar to RAB40A, member RAS oncogene f...
BTBD11                0.046   BTB (POZ) domain containing 11 isoform a 
DR1                   0.037   down-regulator of transcription 1 
CDC37                 0.014   cell division cycle 37 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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