Guide to the Human Genome
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Name: HIST1H2BD Sequence: fasta or formatted (126aa) NCBI GI: 10800138
Description:

histone cluster 1, H2bd

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Other entries for this name:
alt mRNA [126aa] histone cluster 1, H2bd
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         12           1
 C cysteine            0.0          0           0
 D aspartate           2.4          3           1
 E glutamate           5.6          7           1
 F phenylalanine       1.6          2           1
 G glycine             5.6          7           1
 H histidine           2.4          3           1
 I isoleucine          4.8          6           1
 K lysine             15.9         20           2
 L leucine             4.8          6           3
 M methionine          2.4          3           1
 N asparagine          2.4          3           1
 P proline             4.8          6           1
 Q glutamine           2.4          3           1
 R arginine            6.3          8           1
 S serine             11.1         14           2
 T threonine           7.1          9           1
 V valine              7.1          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            4.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   histone cluster 1, H2bd 
HIST1H2BD             1.000   histone cluster 1, H2bd 
HIST1H2BN             0.995   histone cluster 1, H2bn 
HIST1H2BE             0.991   histone cluster 1, H2be 
HIST1H2BF             0.991   histone cluster 1, H2bf 
HIST1H2BG             0.991   histone cluster 1, H2bg 
HIST1H2BC             0.991   histone cluster 1, H2bc 
HIST1H2BI             0.991   histone cluster 1, H2bi 
HIST2H2BE             0.991   histone cluster 2, H2be 
HIST1H2BB             0.991   histone cluster 1, H2bb 
HIST1H2BK             0.986   histone cluster 1, H2bk 
HIST1H2BH             0.986   histone cluster 1, H2bh 
HIST1H2BJ             0.986   histone cluster 1, H2bj 
HIST1H2BO             0.986   histone cluster 1, H2bo 
HIST2H2BF             0.982   histone cluster 2, H2bf isoform b 
HIST2H2BF             0.982   histone cluster 2, H2bf isoform a 
HIST1H2BM             0.977   histone cluster 1, H2bm 
HIST3H2BB             0.968   histone cluster 3, H2bb 
HIST1H2BL             0.964   histone cluster 1, H2bl 
HIST1H2BA             0.828   histone cluster 1, H2ba 
H2BFM                 0.335   PREDICTED: H2B histone family, member M 
H2BFM                 0.335   PREDICTED: H2B histone family, member M 
H2BFM                 0.335   PREDICTED: H2B histone family, member M 
H2BFWT                0.312   H2B histone family, member W, testis-specific 
LOC100129702          0.063   PREDICTED: similar to RAB40A, member RAS oncogene f...
LOC100129702          0.063   PREDICTED: similar to RAB40A, member RAS oncogene f...
LOC100129702          0.063   PREDICTED: similar to RAB40A, member RAS oncogene f...
BTBD11                0.041   BTB (POZ) domain containing 11 isoform a 
C1orf168              0.023   hypothetical protein LOC199920 
VEGFA                 0.018   vascular endothelial growth factor A isoform a precu...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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