Guide to the Human Genome
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Name: H2BFWT Sequence: fasta or formatted (175aa) NCBI GI: 50897288
Description:

H2B histone family, member W, testis-specific

Referenced in:

Histones, Related Proteins, and Modifying Enzymes
Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         16           1
 C cysteine            1.7          3           1
 D aspartate           2.3          4           1
 E glutamate           6.3         11           2
 F phenylalanine       1.1          2           1
 G glycine             5.1          9           1
 H histidine           3.4          6           1
 I isoleucine          3.4          6           1
 K lysine              5.1          9           1
 L leucine             9.1         16           3
 M methionine          3.4          6           1
 N asparagine          1.1          2           1
 P proline             3.4          6           1
 Q glutamine           6.9         12           3
 R arginine           10.9         19           2
 S serine             10.3         18           2
 T threonine           9.7         17           2
 V valine              5.1          9           1
 W tryptophan          1.1          2           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   H2B histone family, member W, testis-specific 
H2BFM                 0.578   PREDICTED: H2B histone family, member M 
H2BFM                 0.578   PREDICTED: H2B histone family, member M 
H2BFM                 0.572   PREDICTED: H2B histone family, member M 
HIST3H2BB             0.225   histone cluster 3, H2bb 
HIST1H2BL             0.219   histone cluster 1, H2bl 
HIST1H2BA             0.219   histone cluster 1, H2ba 
HIST2H2BF             0.216   histone cluster 2, H2bf isoform b 
HIST2H2BF             0.216   histone cluster 2, H2bf isoform a 
HIST1H2BD             0.216   histone cluster 1, H2bd 
HIST1H2BK             0.216   histone cluster 1, H2bk 
HIST1H2BH             0.216   histone cluster 1, H2bh 
HIST1H2BM             0.216   histone cluster 1, H2bm 
HIST1H2BD             0.216   histone cluster 1, H2bd 
HIST1H2BN             0.216   histone cluster 1, H2bn 
HIST1H2BE             0.216   histone cluster 1, H2be 
HIST1H2BF             0.216   histone cluster 1, H2bf 
HIST1H2BG             0.216   histone cluster 1, H2bg 
HIST1H2BC             0.216   histone cluster 1, H2bc 
HIST1H2BI             0.216   histone cluster 1, H2bi 
HIST2H2BE             0.216   histone cluster 2, H2be 
HIST1H2BJ             0.216   histone cluster 1, H2bj 
HIST1H2BO             0.216   histone cluster 1, H2bo 
HIST1H2BB             0.216   histone cluster 1, H2bb 
ST7                   0.025   suppression of tumorigenicity 7 isoform b 
DDX54                 0.022   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 ...
DDX54                 0.022   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1...
LOC100129702          0.016   PREDICTED: similar to RAB40A, member RAS oncogene f...
LOC100129702          0.016   PREDICTED: similar to RAB40A, member RAS oncogene f...
LOC100129702          0.016   PREDICTED: similar to RAB40A, member RAS oncogene f...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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