Guide to the Human Genome
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Name: LOC100129702 Sequence: fasta or formatted (224aa) NCBI GI: 169216368
Description:

PREDICTED: similar to RAB40A, member RAS oncogene family

Not currently referenced in the text

Other entries for this name:
alt mRNA {224aa} PREDICTED: similar to RAB40A, member RAS oncogene family
alt mRNA {224aa} PREDICTED: similar to RAB40A, member RAS oncogene family
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         12           1
 C cysteine            2.2          5           1
 D aspartate           6.2         14           1
 E glutamate           4.5         10           2
 F phenylalanine       4.9         11           1
 G glycine             7.1         16           1
 H histidine           2.7          6           1
 I isoleucine          3.6          8           1
 K lysine              4.0          9           1
 L leucine             9.8         22           2
 M methionine          1.3          3           1
 N asparagine          3.1          7           1
 P proline            11.2         25           2
 Q glutamine           3.6          8           1
 R arginine            6.2         14           1
 S serine              9.4         21           2
 T threonine           4.9         11           2
 V valine              5.8         13           1
 W tryptophan          1.8          4           1
 Y tyrosine            2.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to RAB40A, member RAS oncogene f... 
LOC100129702          1.000   PREDICTED: similar to RAB40A, member RAS oncogene f...
LOC100129702          1.000   PREDICTED: similar to RAB40A, member RAS oncogene f...
HIST3H2BB             0.034   histone cluster 3, H2bb 
HIST1H2BL             0.034   histone cluster 1, H2bl 
HIST2H2BE             0.031   histone cluster 2, H2be 
HIST2H2BF             0.031   histone cluster 2, H2bf isoform b 
HIST2H2BF             0.031   histone cluster 2, H2bf isoform a 
HIST1H2BJ             0.031   histone cluster 1, H2bj 
HIST1H2BD             0.031   histone cluster 1, H2bd 
HIST1H2BK             0.031   histone cluster 1, H2bk 
HIST1H2BO             0.031   histone cluster 1, H2bo 
HIST1H2BH             0.031   histone cluster 1, H2bh 
HIST1H2BM             0.031   histone cluster 1, H2bm 
HIST1H2BD             0.031   histone cluster 1, H2bd 
HIST1H2BN             0.031   histone cluster 1, H2bn 
HIST1H2BB             0.031   histone cluster 1, H2bb 
HIST1H2BE             0.031   histone cluster 1, H2be 
HIST1H2BF             0.031   histone cluster 1, H2bf 
HIST1H2BG             0.031   histone cluster 1, H2bg 
HIST1H2BC             0.031   histone cluster 1, H2bc 
HIST1H2BI             0.031   histone cluster 1, H2bi 
HIST1H2BA             0.029   histone cluster 1, H2ba 
PLEKHA6               0.018   phosphoinositol 3-phosphate-binding protein-3 
LOC100134663          0.016   PREDICTED: hypothetical protein, partial 
MRPL18                0.016   mitochondrial ribosomal protein L18 
MAVS                  0.013   virus-induced signaling adapter 
H2BFM                 0.011   PREDICTED: H2B histone family, member M 
ZFHX2                 0.011   PREDICTED: zinc finger homeobox 2 
H2BFM                 0.011   PREDICTED: H2B histone family, member M 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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