Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 27764904
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27764904 FXYD domain containing ion transport regulator 4
[Homo sapiens]
(89 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27764904 FXYD domain containing ion transport regulator 4 [Ho... 182 4e-47
gi|209862817 FXYD domain containing ion transport regulator 3 is... 89 6e-19
gi|209862809 FXYD domain containing ion transport regulator 3 is... 89 6e-19
gi|5174635 FXYD domain containing ion transport regulator 3 isof... 89 6e-19
gi|209862819 FXYD domain containing ion transport regulator 3 is... 75 1e-14
gi|11612674 FXYD domain containing ion transport regulator 3 iso... 75 1e-14
gi|209862811 FXYD domain containing ion transport regulator 3 is... 65 1e-11
gi|11612672 phospholemman precursor [Homo sapiens] 58 2e-09
gi|11612670 phospholemman precursor [Homo sapiens] 58 2e-09
gi|169194724 PREDICTED: similar to FXYD domain-containing ion tr... 51 2e-07
gi|169194767 PREDICTED: similar to FXYD domain-containing ion tr... 51 2e-07
gi|169190389 PREDICTED: similar to FXYD domain-containing ion tr... 51 2e-07
gi|11612655 FXYD domain-containing ion transport regulator 6 [Ho... 51 2e-07
gi|11612659 FXYD domain-containing ion transport regulator 7 [Ho... 42 1e-04
gi|11125766 FXYD domain-containing ion transport regulator 2 iso... 41 2e-04
gi|11125764 FXYD domain-containing ion transport regulator 2 iso... 41 2e-04
gi|47778938 FXYD domain-containing ion transport regulator 5 [Ho... 40 3e-04
gi|21618361 FXYD domain-containing ion transport regulator 5 [Ho... 40 3e-04
gi|209862815 FXYD domain containing ion transport regulator 3 is... 33 0.037
gi|209862813 FXYD domain containing ion transport regulator 3 is... 33 0.037
gi|31542760 hypothetical protein LOC220108 [Homo sapiens] 27 2.6
gi|91982767 semaphorin 5B isoform 1 [Homo sapiens] 27 3.4
gi|154091328 chemokine (C-C motif) receptor 5 [Homo sapiens] 26 5.9
gi|4502639 chemokine (C-C motif) receptor 5 [Homo sapiens] 26 5.9
gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo ... 26 7.7
gi|38045938 ring finger protein 144 [Homo sapiens] 26 7.7
>gi|27764904 FXYD domain containing ion transport regulator 4
[Homo sapiens]
Length = 89
Score = 182 bits (463), Expect = 4e-47
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MERVTLALLLLAGLTALEANDPFANKDDPFYYDWKNLQLSGLICGGLLAIAGIAAVLSGK 60
MERVTLALLLLAGLTALEANDPFANKDDPFYYDWKNLQLSGLICGGLLAIAGIAAVLSGK
Sbjct: 1 MERVTLALLLLAGLTALEANDPFANKDDPFYYDWKNLQLSGLICGGLLAIAGIAAVLSGK 60
Query: 61 CKCKSSQKQHSPVPEKAIPLITPGSATTC 89
CKCKSSQKQHSPVPEKAIPLITPGSATTC
Sbjct: 61 CKCKSSQKQHSPVPEKAIPLITPGSATTC 89
>gi|209862817 FXYD domain containing ion transport regulator 3
isoform 1 precursor [Homo sapiens]
Length = 87
Score = 89.4 bits (220), Expect = 6e-19
Identities = 48/87 (55%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 1 MERVTLALLL-LAGLTALEANDPFANKDDPFYYDWKNLQLSGLICGGLLAIAGIAAVLSG 59
M++VTL LL+ LAG L+AND +K+ PFYYDW +LQ+ GLIC G+L GI V+S
Sbjct: 1 MQKVTLGLLVFLAGFPVLDAND-LEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSA 59
Query: 60 KCKCKSSQKQHSPVPEKAIPLITPGSA 86
KCKCK QK P + PLITPGSA
Sbjct: 60 KCKCKFGQKS-GHHPGETPPLITPGSA 85
>gi|209862809 FXYD domain containing ion transport regulator 3
isoform 3 [Homo sapiens]
Length = 144
Score = 89.4 bits (220), Expect = 6e-19
Identities = 48/87 (55%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 1 MERVTLALLL-LAGLTALEANDPFANKDDPFYYDWKNLQLSGLICGGLLAIAGIAAVLSG 59
M++VTL LL+ LAG L+AND +K+ PFYYDW +LQ+ GLIC G+L GI V+S
Sbjct: 58 MQKVTLGLLVFLAGFPVLDAND-LEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSA 116
Query: 60 KCKCKSSQKQHSPVPEKAIPLITPGSA 86
KCKCK QK P + PLITPGSA
Sbjct: 117 KCKCKFGQKS-GHHPGETPPLITPGSA 142
>gi|5174635 FXYD domain containing ion transport regulator 3
isoform 1 precursor [Homo sapiens]
Length = 87
Score = 89.4 bits (220), Expect = 6e-19
Identities = 48/87 (55%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 1 MERVTLALLL-LAGLTALEANDPFANKDDPFYYDWKNLQLSGLICGGLLAIAGIAAVLSG 59
M++VTL LL+ LAG L+AND +K+ PFYYDW +LQ+ GLIC G+L GI V+S
Sbjct: 1 MQKVTLGLLVFLAGFPVLDAND-LEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSA 59
Query: 60 KCKCKSSQKQHSPVPEKAIPLITPGSA 86
KCKCK QK P + PLITPGSA
Sbjct: 60 KCKCKFGQKS-GHHPGETPPLITPGSA 85
>gi|209862819 FXYD domain containing ion transport regulator 3
isoform 2 precursor [Homo sapiens]
Length = 113
Score = 75.1 bits (183), Expect = 1e-14
Identities = 48/113 (42%), Positives = 59/113 (52%), Gaps = 29/113 (25%)
Query: 1 MERVTLALLL-LAGLTALEANDPFANKDDPFYYDWKNLQLSGLICGGLLAIAGIAAVLS- 58
M++VTL LL+ LAG L+AND +K+ PFYYDW +LQ+ GLIC G+L GI V+S
Sbjct: 1 MQKVTLGLLVFLAGFPVLDAND-LEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSE 59
Query: 59 -------------------------GKCKCKSSQKQHSPVPEKAIPLITPGSA 86
KCKCK QK P + PLITPGSA
Sbjct: 60 WRSSGEQAGRGWGSPPLTTQLSPTGAKCKCKFGQKS-GHHPGETPPLITPGSA 111
>gi|11612674 FXYD domain containing ion transport regulator 3
isoform 2 precursor [Homo sapiens]
Length = 113
Score = 75.1 bits (183), Expect = 1e-14
Identities = 48/113 (42%), Positives = 59/113 (52%), Gaps = 29/113 (25%)
Query: 1 MERVTLALLL-LAGLTALEANDPFANKDDPFYYDWKNLQLSGLICGGLLAIAGIAAVLS- 58
M++VTL LL+ LAG L+AND +K+ PFYYDW +LQ+ GLIC G+L GI V+S
Sbjct: 1 MQKVTLGLLVFLAGFPVLDAND-LEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSE 59
Query: 59 -------------------------GKCKCKSSQKQHSPVPEKAIPLITPGSA 86
KCKCK QK P + PLITPGSA
Sbjct: 60 WRSSGEQAGRGWGSPPLTTQLSPTGAKCKCKFGQKS-GHHPGETPPLITPGSA 111
>gi|209862811 FXYD domain containing ion transport regulator 3
isoform4 precursor [Homo sapiens]
Length = 96
Score = 64.7 bits (156), Expect = 1e-11
Identities = 39/95 (41%), Positives = 49/95 (51%), Gaps = 28/95 (29%)
Query: 1 MERVTLALLL-LAGLTALEANDPFANKDDPFYYDWKNLQLSGLICGGLLAIAGIAAVLS- 58
M++VTL LL+ LAG L+AND +K+ PFYYDW +LQ+ GLIC G+L GI V+S
Sbjct: 1 MQKVTLGLLVFLAGFPVLDAND-LEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSE 59
Query: 59 -------------------------GKCKCKSSQK 68
KCKCK QK
Sbjct: 60 WRSSGEQAGRGWGSPPLTTQLSPTGAKCKCKFGQK 94
>gi|11612672 phospholemman precursor [Homo sapiens]
Length = 92
Score = 57.8 bits (138), Expect = 2e-09
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 14 LTALEANDPFANKDDPFYYDWKNLQLSGLICGGLLAIAGIAAVLSGKCKCKSSQKQHSPV 73
LT +A P + DPF YD+++LQ+ GL+ G+L I GI VLS +C+CK +Q+Q +
Sbjct: 15 LTMAKAESP--KEHDPFTYDYQSLQIGGLVIAGILFILGILIVLSRRCRCKFNQQQRTGE 72
Query: 74 PEK 76
P++
Sbjct: 73 PDE 75
>gi|11612670 phospholemman precursor [Homo sapiens]
Length = 92
Score = 57.8 bits (138), Expect = 2e-09
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 14 LTALEANDPFANKDDPFYYDWKNLQLSGLICGGLLAIAGIAAVLSGKCKCKSSQKQHSPV 73
LT +A P + DPF YD+++LQ+ GL+ G+L I GI VLS +C+CK +Q+Q +
Sbjct: 15 LTMAKAESP--KEHDPFTYDYQSLQIGGLVIAGILFILGILIVLSRRCRCKFNQQQRTGE 72
Query: 74 PEK 76
P++
Sbjct: 73 PDE 75
>gi|169194724 PREDICTED: similar to FXYD domain-containing ion
transport regulator 6 [Homo sapiens]
Length = 95
Score = 51.2 bits (121), Expect = 2e-07
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 28 DPFYYDWKNLQLSGLICGGLLAIAGIAAVLSGKCKCKSSQKQHSPVPEKA 77
DPF+YD++ L++ GL+C +L GI +L +CKC +QK +P E+A
Sbjct: 28 DPFHYDYQTLRIRGLVCAVVLFSIGILLILGCRCKCSFNQKPRTPGEEEA 77
>gi|169194767 PREDICTED: similar to FXYD domain-containing ion
transport regulator 6 [Homo sapiens]
Length = 95
Score = 51.2 bits (121), Expect = 2e-07
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 28 DPFYYDWKNLQLSGLICGGLLAIAGIAAVLSGKCKCKSSQKQHSPVPEKA 77
DPF+YD++ L++ GL+C +L GI +L +CKC +QK +P E+A
Sbjct: 28 DPFHYDYQTLRIRGLVCAVVLFSIGILLILGCRCKCSFNQKPRTPGEEEA 77
>gi|169190389 PREDICTED: similar to FXYD domain-containing ion
transport regulator 6 [Homo sapiens]
Length = 95
Score = 51.2 bits (121), Expect = 2e-07
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 28 DPFYYDWKNLQLSGLICGGLLAIAGIAAVLSGKCKCKSSQKQHSPVPEKA 77
DPF+YD++ L++ GL+C +L GI +L +CKC +QK +P E+A
Sbjct: 28 DPFHYDYQTLRIRGLVCAVVLFSIGILLILGCRCKCSFNQKPRTPGEEEA 77
>gi|11612655 FXYD domain-containing ion transport regulator 6
[Homo sapiens]
Length = 95
Score = 51.2 bits (121), Expect = 2e-07
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 6 LALLLLAGLTALEANDPFANKD---DPFYYDWKNLQLSGLICGGLLAIAGIAAVLSGKCK 62
L L+ L L A A K+ DPF+YD++ L++ GL+ +L GI +LS +CK
Sbjct: 3 LVLVFLCSLLAPMVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCK 62
Query: 63 CKSSQKQHSPVPEKA 77
C +QK +P E+A
Sbjct: 63 CSFNQKPRAPGDEEA 77
>gi|11612659 FXYD domain-containing ion transport regulator 7
[Homo sapiens]
Length = 80
Score = 41.6 bits (96), Expect = 1e-04
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 28 DPFYYDWKNLQLSGLICGGLLAIAGIAAVLSGKCKC-KSSQKQHSPVPEKA---IPLITP 83
DPFYYD+ +Q G+ +L + GI V+S K KC K+ + SP + +P P
Sbjct: 16 DPFYYDYNTVQTVGMTLATILFLLGILIVISKKVKCRKADSRSESPTCKSCKSELPSSAP 75
Query: 84 G 84
G
Sbjct: 76 G 76
>gi|11125766 FXYD domain-containing ion transport regulator 2
isoform 1 [Homo sapiens]
Length = 66
Score = 40.8 bits (94), Expect = 2e-04
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 28 DPFYYDWKNLQLSGLICGGLLAIAGIAAVLSGKCKCKSSQKQ 69
DPFYYD++ ++ GLI GL I G+ +LS + +C ++K+
Sbjct: 17 DPFYYDYETVRNGGLIFAGLAFIVGLLILLSRRFRCGGNKKR 58
>gi|11125764 FXYD domain-containing ion transport regulator 2
isoform 2 [Homo sapiens]
Length = 64
Score = 40.8 bits (94), Expect = 2e-04
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 28 DPFYYDWKNLQLSGLICGGLLAIAGIAAVLSGKCKCKSSQKQ 69
DPFYYD++ ++ GLI GL I G+ +LS + +C ++K+
Sbjct: 15 DPFYYDYETVRNGGLIFAGLAFIVGLLILLSRRFRCGGNKKR 56
>gi|47778938 FXYD domain-containing ion transport regulator 5 [Homo
sapiens]
Length = 178
Score = 40.4 bits (93), Expect = 3e-04
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 25 NKDDPFYYDWKNLQLSGLICGGLLAIAGIAAVLSGKCK 62
++DDPF+YD L+ GL+ +L I GI + SGKC+
Sbjct: 130 HEDDPFFYDEHTLRKRGLLVAAVLFITGIIILTSGKCR 167
>gi|21618361 FXYD domain-containing ion transport regulator 5 [Homo
sapiens]
Length = 178
Score = 40.4 bits (93), Expect = 3e-04
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 25 NKDDPFYYDWKNLQLSGLICGGLLAIAGIAAVLSGKCK 62
++DDPF+YD L+ GL+ +L I GI + SGKC+
Sbjct: 130 HEDDPFFYDEHTLRKRGLLVAAVLFITGIIILTSGKCR 167
>gi|209862815 FXYD domain containing ion transport regulator 3
isoform 5 precursor [Homo sapiens]
Length = 61
Score = 33.5 bits (75), Expect = 0.037
Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 1 MERVTLALLL-LAGLTALEANDPFANKDDPFYY 32
M++VTL LL+ LAG L+AND +K+ PFYY
Sbjct: 1 MQKVTLGLLVFLAGFPVLDAND-LEDKNSPFYY 32
>gi|209862813 FXYD domain containing ion transport regulator 3
isoform 5 precursor [Homo sapiens]
Length = 61
Score = 33.5 bits (75), Expect = 0.037
Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 1 MERVTLALLL-LAGLTALEANDPFANKDDPFYY 32
M++VTL LL+ LAG L+AND +K+ PFYY
Sbjct: 1 MQKVTLGLLVFLAGFPVLDAND-LEDKNSPFYY 32
>gi|31542760 hypothetical protein LOC220108 [Homo sapiens]
Length = 582
Score = 27.3 bits (59), Expect = 2.6
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 59 GKCKCKSSQKQHS-PVPEKAIPLITPGSA 86
G+ S +K+HS P+P A+P TPGS+
Sbjct: 326 GRVHHASEKKRHSTPLPSTAVPSHTPGSS 354
>gi|91982767 semaphorin 5B isoform 1 [Homo sapiens]
Length = 1151
Score = 26.9 bits (58), Expect = 3.4
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 56 VLSGKCKCKSSQKQHSPVPEKAIPLITPGS----ATTC 89
+L G C + Q P P IP+I P S AT C
Sbjct: 992 LLPGSSACAGNSSQSRPCPYSEIPVILPASSMEEATDC 1029
>gi|154091328 chemokine (C-C motif) receptor 5 [Homo sapiens]
Length = 352
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 31 YYDWKNLQ-----LSGLICGGLLAIAGIAAVLSGKCKCKSSQKQHSPV 73
Y WKN Q + GL+ L+ + + +L +C++ +K+H V
Sbjct: 187 YQFWKNFQTLKIVILGLVLPLLVMVICYSGILKTLLRCRNEKKRHRAV 234
>gi|4502639 chemokine (C-C motif) receptor 5 [Homo sapiens]
Length = 352
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 31 YYDWKNLQ-----LSGLICGGLLAIAGIAAVLSGKCKCKSSQKQHSPV 73
Y WKN Q + GL+ L+ + + +L +C++ +K+H V
Sbjct: 187 YQFWKNFQTLKIVILGLVLPLLVMVICYSGILKTLLRCRNEKKRHRAV 234
>gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo
sapiens]
Length = 439
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 49 AIAGIAAVLS---GKCKCKSSQKQHSPVPEKAIPLITPGSATT 88
A AG A LS +C S++K P P + P TP SA T
Sbjct: 298 AAAGAAPRLSPQAARCTALSTEKPDRPGPPRRPPAPTPVSAPT 340
>gi|38045938 ring finger protein 144 [Homo sapiens]
Length = 292
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 34 WKNLQLSGLICG-GLLAIAGIAAVLSGK-----CKCKSSQKQHSPVP 74
W Q+ G+ G GLL + +L CKCK S+ P+P
Sbjct: 245 WHRTQVVGIFAGFGLLLLVASPFLLLATPFVLCCKCKCSKGDDDPLP 291
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,487,061
Number of Sequences: 37866
Number of extensions: 123662
Number of successful extensions: 354
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 327
Number of HSP's gapped (non-prelim): 26
length of query: 89
length of database: 18,247,518
effective HSP length: 61
effective length of query: 28
effective length of database: 15,937,692
effective search space: 446255376
effective search space used: 446255376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.