Search of human proteins with 25306275

Search of human proteins with 25306275

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|25306275 mitochondrial ribosomal protein L11 isoform c [Homo
sapiens]
         (181 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|25306275 mitochondrial ribosomal protein L11 isoform c [Homo ...   351   2e-97
gi|7705618 mitochondrial ribosomal protein L11 isoform a [Homo s...   305   1e-83
gi|25306272 mitochondrial ribosomal protein L11 isoform b [Homo ...   240   4e-64
gi|4506597 ribosomal protein L12 [Homo sapiens]                        32   0.39 
gi|22035616 oxysterol-binding protein-like protein 7 [Homo sapiens]    30   1.1  
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3...    29   1.9  
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1...    29   1.9  
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4...    29   1.9  
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [...    29   1.9  
gi|94420689 neural cell adhesion molecule 1 isoform 1 [Homo sapi...    28   3.3  
gi|115529482 neural cell adhesion molecule 1 isoform 2 [Homo sap...    28   3.3  
gi|115529478 neural cell adhesion molecule 1 isoform 3 [Homo sap...    28   3.3  
gi|169790964 hypothetical protein LOC51252 isoform A [Homo sapiens]    28   3.3  
gi|82830424 gon-4-like isoform a [Homo sapiens]                        28   4.3  
gi|82830428 gon-4-like isoform b [Homo sapiens]                        28   4.3  
gi|239752252 PREDICTED: hypothetical protein XP_002348181 [Homo ...    28   5.6  
gi|109826564 neurofibromin isoform 1 [Homo sapiens]                    28   5.6  
gi|4557793 neurofibromin isoform 2 [Homo sapiens]                      28   5.6  
gi|57863310 stromal antigen 3 [Homo sapiens]                           28   5.6  
gi|4758018 calponin 2 isoform a [Homo sapiens]                         28   5.6  
gi|32698688 citron [Homo sapiens]                                      27   7.3  

>gi|25306275 mitochondrial ribosomal protein L11 isoform c [Homo
           sapiens]
          Length = 181

 Score =  351 bits (900), Expect = 2e-97
 Identities = 181/181 (100%), Positives = 181/181 (100%)

Query: 1   MSKLGRAARGLRKPEVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDI 60
           MSKLGRAARGLRKPEVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDI
Sbjct: 1   MSKLGRAARGLRKPEVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDI 60

Query: 61  KEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEI 120
           KEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEI
Sbjct: 61  KEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEI 120

Query: 121 ARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKERCSANVLRNGKISMKDPSGRSS 180
           ARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKERCSANVLRNGKISMKDPSGRSS
Sbjct: 121 ARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKERCSANVLRNGKISMKDPSGRSS 180

Query: 181 V 181
           V
Sbjct: 181 V 181


>gi|7705618 mitochondrial ribosomal protein L11 isoform a [Homo
           sapiens]
          Length = 192

 Score =  305 bits (782), Expect = 1e-83
 Identities = 158/161 (98%), Positives = 159/161 (98%)

Query: 1   MSKLGRAARGLRKPEVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDI 60
           MSKLGRAARGLRKPEVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDI
Sbjct: 1   MSKLGRAARGLRKPEVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDI 60

Query: 61  KEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEI 120
           KEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEI
Sbjct: 61  KEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEI 120

Query: 121 ARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKERCS 161
           ARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVK+  S
Sbjct: 121 ARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLSS 161


>gi|25306272 mitochondrial ribosomal protein L11 isoform b [Homo
           sapiens]
          Length = 166

 Score =  240 bits (613), Expect = 4e-64
 Identities = 132/161 (81%), Positives = 133/161 (82%), Gaps = 26/161 (16%)

Query: 1   MSKLGRAARGLRKPEVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDI 60
           MSKLGRAARGLRKPE                          RGVSINQFCKEFNERTKDI
Sbjct: 1   MSKLGRAARGLRKPE--------------------------RGVSINQFCKEFNERTKDI 34

Query: 61  KEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEI 120
           KEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEI
Sbjct: 35  KEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEI 94

Query: 121 ARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKERCS 161
           ARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVK+  S
Sbjct: 95  ARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLSS 135


>gi|4506597 ribosomal protein L12 [Homo sapiens]
          Length = 165

 Score = 31.6 bits (70), Expect = 0.39
 Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 7/122 (5%)

Query: 35  LGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAA 94
           L P +G  G+S  +   +  + T D K G+ +  K+ ++ +R  +I++     +  +KA 
Sbjct: 28  LAPKIGPLGLSPKKVGDDIAKATGDWK-GLRITVKLTIQ-NRQAQIEVVPSASALIIKAL 85

Query: 95  AGIEKGAR-QTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGI 153
               +  + Q   + +G +T   +  IAR + +  + A +   LS  ++ I+G+A+S+G 
Sbjct: 86  KEPPRDRKKQKNIKHSGNITFDEIVNIAR-QMRHRSLARE---LSGTIKEILGTAQSVGC 141

Query: 154 RV 155
            V
Sbjct: 142 NV 143


>gi|22035616 oxysterol-binding protein-like protein 7 [Homo sapiens]
          Length = 842

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 1   MSKLGRAARGLRKPEVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDI 60
           +S+ GR    L      G+ R     G  +  P   P   +R     QF  E NE T ++
Sbjct: 691 LSRSGRVLHRLFGKWHEGLYRGPTPGGQCIWKPNSMPPDHERNFGFTQFALELNELTAEL 750

Query: 61  KEGIPLPTKILVKPDRTF 78
           K  +P  T   ++PD+ +
Sbjct: 751 KRSLP-STDTRLRPDQRY 767


>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
           [Homo sapiens]
          Length = 535

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 5   GRAARGLRKPEVG-GVIRAIVRAGLAMPGPPLGPVLGQRG 43
           GR  RG   P  G G      RAG +  G PLGP  G RG
Sbjct: 407 GRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRG 446


>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
           [Homo sapiens]
          Length = 636

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 5   GRAARGLRKPEVG-GVIRAIVRAGLAMPGPPLGPVLGQRG 43
           GR  RG   P  G G      RAG +  G PLGP  G RG
Sbjct: 508 GRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRG 547


>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
           [Homo sapiens]
          Length = 532

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 5   GRAARGLRKPEVG-GVIRAIVRAGLAMPGPPLGPVLGQRG 43
           GR  RG   P  G G      RAG +  G PLGP  G RG
Sbjct: 404 GRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRG 443


>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
           [Homo sapiens]
          Length = 633

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 5   GRAARGLRKPEVG-GVIRAIVRAGLAMPGPPLGPVLGQRG 43
           GR  RG   P  G G      RAG +  G PLGP  G RG
Sbjct: 505 GRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRG 544


>gi|94420689 neural cell adhesion molecule 1 isoform 1 [Homo
           sapiens]
          Length = 848

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 133 QDVPLSSVVRSIIGSARSLGIRVVKE------RCSANVLRNGKISMKD 174
           +DV L   VR I+ S   L IR +K+      RC   +L  G+I+ KD
Sbjct: 156 RDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKD 203


>gi|115529482 neural cell adhesion molecule 1 isoform 2 [Homo
           sapiens]
          Length = 858

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 133 QDVPLSSVVRSIIGSARSLGIRVVKE------RCSANVLRNGKISMKD 174
           +DV L   VR I+ S   L IR +K+      RC   +L  G+I+ KD
Sbjct: 156 RDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKD 203


>gi|115529478 neural cell adhesion molecule 1 isoform 3 [Homo
           sapiens]
          Length = 761

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 133 QDVPLSSVVRSIIGSARSLGIRVVKE------RCSANVLRNGKISMKD 174
           +DV L   VR I+ S   L IR +K+      RC   +L  G+I+ KD
Sbjct: 156 RDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKD 203


>gi|169790964 hypothetical protein LOC51252 isoform A [Homo sapiens]
          Length = 647

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 91  LKAAAGIEKGARQTG-KEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSAR 149
           L   AG+ +   Q   +E+A  ++L H+Y+   + AQ +  A  D  L  ++  +  ++ 
Sbjct: 368 LPGEAGLNENEEQDAPQEIALDISLGHIYKFLALCAQAQPGAYTDENLMGLIELLCRTSL 427

Query: 150 SLGIRVV 156
            +G+R++
Sbjct: 428 DVGLRLL 434


>gi|82830424 gon-4-like isoform a [Homo sapiens]
          Length = 2240

 Score = 28.1 bits (61), Expect = 4.3
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 31   PGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGI-PLPTKI 70
            PGPPL     Q G+S N  C+    +T++ ++ + PLP  I
Sbjct: 1269 PGPPLADAECQEGLSENSACRWTVVKTEEGRQALEPLPQGI 1309


>gi|82830428 gon-4-like isoform b [Homo sapiens]
          Length = 1529

 Score = 28.1 bits (61), Expect = 4.3
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 31   PGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGI-PLPTKI 70
            PGPPL     Q G+S N  C+    +T++ ++ + PLP  I
Sbjct: 1269 PGPPLADAECQEGLSENSACRWTVVKTEEGRQALEPLPQGI 1309


>gi|239752252 PREDICTED: hypothetical protein XP_002348181 [Homo
           sapiens]
          Length = 311

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 10  GLRKPEVGGVIRAIVRAGLAMPGPPLG-PVLGQRGVSINQFCKEFNERTKDIKEGIPLPT 68
           G   P  G  +R    +    PG P G P  G RG S  Q  +   E  ++ ++G+P P 
Sbjct: 72  GASPPAAGRPLRETAESW--SPGQPGGDPSAGHRGHSRQQELRTLQEACRERRQGLPSPV 129

Query: 69  KI 70
            +
Sbjct: 130 TL 131


>gi|109826564 neurofibromin isoform 1 [Homo sapiens]
          Length = 2839

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 16  VGGV-IRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERT 57
           +GGV ++    +GLA   PP+GPV  ++G  I+    E N  T
Sbjct: 847 LGGVCLQQRSNSGLATYSPPMGPVSERKGSMISVMSSEGNADT 889


>gi|4557793 neurofibromin isoform 2 [Homo sapiens]
          Length = 2818

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 16  VGGV-IRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERT 57
           +GGV ++    +GLA   PP+GPV  ++G  I+    E N  T
Sbjct: 847 LGGVCLQQRSNSGLATYSPPMGPVSERKGSMISVMSSEGNADT 889


>gi|57863310 stromal antigen 3 [Homo sapiens]
          Length = 1225

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 13/41 (31%), Positives = 25/41 (60%)

Query: 33  PPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVK 73
           PP+G V G++G++  +   + ++R K  +  IPL  ++L K
Sbjct: 550 PPVGRVTGRKGLTSKERKTQADDRVKLTEHLIPLLPQLLAK 590


>gi|4758018 calponin 2 isoform a [Homo sapiens]
          Length = 309

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 9/67 (13%)

Query: 56  RTKDIKEGIPLPTKILVKPDRTFE---IKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLV 112
           +TK ++ G+ +  K   K +R F+   +K GQ  +   +    G  K A Q+G    G  
Sbjct: 132 KTKGLQSGVDIGVKYSEKQERNFDDATMKAGQCVIGLQM----GTNKCASQSGMTAYG-- 185

Query: 113 TLKHVYE 119
           T +H+Y+
Sbjct: 186 TRRHLYD 192


>gi|32698688 citron [Homo sapiens]
          Length = 2027

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 111 LVTLKHVYEIARIKAQDEAFALQDVPLSSV---VRSIIGSARSLGIRVVKERCSANV 164
           L+ +KHV    R K  D    LQ++  S+    VRS++G      ++VV+E+ + ++
Sbjct: 67  LMKIKHVSNFVR-KYSDTIAELQELQPSAKDFEVRSLVGCGHFAEVQVVREKATGDI 122


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.137    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,534,283
Number of Sequences: 37866
Number of extensions: 274019
Number of successful extensions: 737
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 729
Number of HSP's gapped (non-prelim): 21
length of query: 181
length of database: 18,247,518
effective HSP length: 96
effective length of query: 85
effective length of database: 14,612,382
effective search space: 1242052470
effective search space used: 1242052470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.