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Search of human proteins with 12056461
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|12056461 crystallin, beta A3 [Homo sapiens]
(215 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|12056461 crystallin, beta A3 [Homo sapiens] 465 e-131
gi|4503059 crystallin, beta A4 [Homo sapiens] 300 8e-82
gi|16936542 crystallin, beta A2 [Homo sapiens] 235 2e-62
gi|16936540 crystallin, beta A2 [Homo sapiens] 235 2e-62
gi|7019357 crystallin, beta A2 [Homo sapiens] 235 2e-62
gi|4503061 crystallin, beta B1 [Homo sapiens] 196 1e-50
gi|4758074 crystallin, beta B3 [Homo sapiens] 170 7e-43
gi|4503063 crystallin, beta B2 [Homo sapiens] 166 1e-41
gi|8922120 crystallin, gamma S [Homo sapiens] 119 1e-27
gi|10518338 crystallin, gamma C [Homo sapiens] 118 4e-27
gi|148491074 crystallin, gamma B [Homo sapiens] 114 6e-26
gi|148491057 crystallin, gamma A [Homo sapiens] 105 2e-23
gi|13377002 crystallin, gamma D [Homo sapiens] 104 5e-23
gi|21389517 gammaN-crystallin [Homo sapiens] 103 1e-22
gi|89886227 absent in melanoma 1-like [Homo sapiens] 96 2e-20
gi|90403579 beta-gamma crystallin domain containing 3 [Homo sapi... 94 7e-20
gi|62988361 absent in melanoma 1 [Homo sapiens] 94 1e-19
gi|239745404 PREDICTED: hypothetical protein XP_002343488 [Homo ... 29 2.6
gi|19923586 nuclear receptor binding SET domain protein 1 isofor... 28 4.5
gi|39777614 SS18-like protein 1 [Homo sapiens] 28 5.9
>gi|12056461 crystallin, beta A3 [Homo sapiens]
Length = 215
Score = 465 bits (1196), Expect = e-131
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 METQAEQQELETLPTTKMAQTNPTPGSLGPWKITIYDQENFQGKRMEFTSSCPNVSERSF 60
METQAEQQELETLPTTKMAQTNPTPGSLGPWKITIYDQENFQGKRMEFTSSCPNVSERSF
Sbjct: 1 METQAEQQELETLPTTKMAQTNPTPGSLGPWKITIYDQENFQGKRMEFTSSCPNVSERSF 60
Query: 61 DNVRSLKVESGAWIGYEHTSFCGQQFILERGEYPRWDAWSGSNAYHIERLMSFRPICSAN 120
DNVRSLKVESGAWIGYEHTSFCGQQFILERGEYPRWDAWSGSNAYHIERLMSFRPICSAN
Sbjct: 61 DNVRSLKVESGAWIGYEHTSFCGQQFILERGEYPRWDAWSGSNAYHIERLMSFRPICSAN 120
Query: 121 HKESKMTIFEKENFIGRQWEISDDYPSLQAMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQ 180
HKESKMTIFEKENFIGRQWEISDDYPSLQAMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQ
Sbjct: 121 HKESKMTIFEKENFIGRQWEISDDYPSLQAMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQ 180
Query: 181 YILECDHHGGDYKHWREWGSHAQTSQIQSIRRIQQ 215
YILECDHHGGDYKHWREWGSHAQTSQIQSIRRIQQ
Sbjct: 181 YILECDHHGGDYKHWREWGSHAQTSQIQSIRRIQQ 215
>gi|4503059 crystallin, beta A4 [Homo sapiens]
Length = 196
Score = 300 bits (767), Expect = 8e-82
Identities = 129/189 (68%), Positives = 157/189 (83%)
Query: 27 SLGPWKITIYDQENFQGKRMEFTSSCPNVSERSFDNVRSLKVESGAWIGYEHTSFCGQQF 86
S GPWK+ ++D++ FQG+R EFT+ CP+V E F+ VRSLKV SGAW+G+EH F GQQ+
Sbjct: 8 SAGPWKMVVWDEDGFQGRRHEFTAECPSVLELGFETVRSLKVLSGAWVGFEHAGFQGQQY 67
Query: 87 ILERGEYPRWDAWSGSNAYHIERLMSFRPICSANHKESKMTIFEKENFIGRQWEISDDYP 146
ILERGEYP WDAW G+ AY ERL SFRP ANH++S++TIFE+ENF+G++ E+SDDYP
Sbjct: 68 ILERGEYPSWDAWGGNTAYPAERLTSFRPAACANHRDSRLTIFEQENFLGKKGELSDDYP 127
Query: 147 SLQAMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQYILECDHHGGDYKHWREWGSHAQTSQ 206
SLQAMGW NEVGS + SGAWVC Q+PGYRG+QY+LECDHH GDYKH+REWGSHA T Q
Sbjct: 128 SLQAMGWEGNEVGSFHVHSGAWVCSQFPGYRGFQYVLECDHHSGDYKHFREWGSHAPTFQ 187
Query: 207 IQSIRRIQQ 215
+QSIRRIQQ
Sbjct: 188 VQSIRRIQQ 196
Score = 62.4 bits (150), Expect = 3e-10
Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 117 CSANHKESKMTIFEKENFIGRQWEISDDYPSLQAMGWFNNEVGSMKIQSGAWVCYQYPGY 176
C+ + KM +++++ F GR+ E + + PS+ +G+ V S+K+ SGAWV +++ G+
Sbjct: 5 CTKSAGPWKMVVWDEDGFQGRRHEFTAECPSVLELGF--ETVRSLKVLSGAWVGFEHAGF 62
Query: 177 RGYQYILECDHHGGDYKHWREWGSH 201
+G QYILE G+Y W WG +
Sbjct: 63 QGQQYILE----RGEYPSWDAWGGN 83
>gi|16936542 crystallin, beta A2 [Homo sapiens]
Length = 197
Score = 235 bits (600), Expect = 2e-62
Identities = 104/193 (53%), Positives = 145/193 (75%), Gaps = 2/193 (1%)
Query: 23 PTPGSLGPWKITIYDQENFQGKRMEFTSSCPNVSERS-FDNVRSLKVESGAWIGYEHTSF 81
P PG P +T++D+E+FQG+R S C NV ER VRS+KVE+G W+ +E+ F
Sbjct: 5 PAPGP-APASLTLWDEEDFQGRRCRLLSDCANVCERGGLPRVRSVKVENGVWVAFEYPDF 63
Query: 82 CGQQFILERGEYPRWDAWSGSNAYHIERLMSFRPICSANHKESKMTIFEKENFIGRQWEI 141
GQQFILE+G+YPRW AWSGS++++ +L+SFRP+ ANH +S++T+FE +NF G ++++
Sbjct: 64 QGQQFILEKGDYPRWSAWSGSSSHNSNQLLSFRPVLCANHNDSRVTLFEGDNFQGCKFDL 123
Query: 142 SDDYPSLQAMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQYILECDHHGGDYKHWREWGSH 201
DDYPSL +MGW + +VGS+K+ SGAWV YQYPGYRGYQY+LE D H G++ + E G+
Sbjct: 124 VDDYPSLPSMGWASKDVGSLKVSSGAWVAYQYPGYRGYQYVLERDRHSGEFCTYGELGTQ 183
Query: 202 AQTSQIQSIRRIQ 214
A T Q+QSIRR+Q
Sbjct: 184 AHTGQLQSIRRVQ 196
>gi|16936540 crystallin, beta A2 [Homo sapiens]
Length = 197
Score = 235 bits (600), Expect = 2e-62
Identities = 104/193 (53%), Positives = 145/193 (75%), Gaps = 2/193 (1%)
Query: 23 PTPGSLGPWKITIYDQENFQGKRMEFTSSCPNVSERS-FDNVRSLKVESGAWIGYEHTSF 81
P PG P +T++D+E+FQG+R S C NV ER VRS+KVE+G W+ +E+ F
Sbjct: 5 PAPGP-APASLTLWDEEDFQGRRCRLLSDCANVCERGGLPRVRSVKVENGVWVAFEYPDF 63
Query: 82 CGQQFILERGEYPRWDAWSGSNAYHIERLMSFRPICSANHKESKMTIFEKENFIGRQWEI 141
GQQFILE+G+YPRW AWSGS++++ +L+SFRP+ ANH +S++T+FE +NF G ++++
Sbjct: 64 QGQQFILEKGDYPRWSAWSGSSSHNSNQLLSFRPVLCANHNDSRVTLFEGDNFQGCKFDL 123
Query: 142 SDDYPSLQAMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQYILECDHHGGDYKHWREWGSH 201
DDYPSL +MGW + +VGS+K+ SGAWV YQYPGYRGYQY+LE D H G++ + E G+
Sbjct: 124 VDDYPSLPSMGWASKDVGSLKVSSGAWVAYQYPGYRGYQYVLERDRHSGEFCTYGELGTQ 183
Query: 202 AQTSQIQSIRRIQ 214
A T Q+QSIRR+Q
Sbjct: 184 AHTGQLQSIRRVQ 196
>gi|7019357 crystallin, beta A2 [Homo sapiens]
Length = 197
Score = 235 bits (600), Expect = 2e-62
Identities = 104/193 (53%), Positives = 145/193 (75%), Gaps = 2/193 (1%)
Query: 23 PTPGSLGPWKITIYDQENFQGKRMEFTSSCPNVSERS-FDNVRSLKVESGAWIGYEHTSF 81
P PG P +T++D+E+FQG+R S C NV ER VRS+KVE+G W+ +E+ F
Sbjct: 5 PAPGP-APASLTLWDEEDFQGRRCRLLSDCANVCERGGLPRVRSVKVENGVWVAFEYPDF 63
Query: 82 CGQQFILERGEYPRWDAWSGSNAYHIERLMSFRPICSANHKESKMTIFEKENFIGRQWEI 141
GQQFILE+G+YPRW AWSGS++++ +L+SFRP+ ANH +S++T+FE +NF G ++++
Sbjct: 64 QGQQFILEKGDYPRWSAWSGSSSHNSNQLLSFRPVLCANHNDSRVTLFEGDNFQGCKFDL 123
Query: 142 SDDYPSLQAMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQYILECDHHGGDYKHWREWGSH 201
DDYPSL +MGW + +VGS+K+ SGAWV YQYPGYRGYQY+LE D H G++ + E G+
Sbjct: 124 VDDYPSLPSMGWASKDVGSLKVSSGAWVAYQYPGYRGYQYVLERDRHSGEFCTYGELGTQ 183
Query: 202 AQTSQIQSIRRIQ 214
A T Q+QSIRR+Q
Sbjct: 184 AHTGQLQSIRRVQ 196
>gi|4503061 crystallin, beta B1 [Homo sapiens]
Length = 252
Score = 196 bits (498), Expect = 1e-50
Identities = 99/204 (48%), Positives = 138/204 (67%), Gaps = 14/204 (6%)
Query: 12 TLPTTKMAQTNPTPGSLGPWKITIYDQENFQGKRMEFTSSCPNVSERSFDNVRSLKVESG 71
T+P T PG+ +++ +++ ENFQG+R EF+ C N+++R FD VRS+ V +G
Sbjct: 43 TVPITSAKAAELPPGN---YRLVVFELENFQGRRAEFSGECSNLADRGFDRVRSIIVSAG 99
Query: 72 AWIGYEHTSFCGQQFILERGEYPRWDAWSGSNAYHIERLMSFRPICSANHKESKMTIFEK 131
W+ +E ++F G+ FILE+GEYPRW+ WS S Y +RLMSFRPI + +E K+++FE
Sbjct: 100 PWVAFEQSNFRGEMFILEKGEYPRWNTWSSS--YRSDRLMSFRPI-KMDAQEHKISLFEG 156
Query: 132 ENFIGRQWEI-SDDYPSLQAMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQYILECDHHGG 190
NF G EI DD PSL G F++ VGS+K+ SG WV YQYPGYRGYQY+LE G
Sbjct: 157 ANFKGNTIEIQGDDAPSLWVYG-FSDRVGSVKVSSGTWVGYQYPGYRGYQYLLE----PG 211
Query: 191 DYKHWREWGSHAQTSQIQSIRRIQ 214
D++HW EWG A Q+QS+RR++
Sbjct: 212 DFRHWNEWG--AFQPQMQSLRRLR 233
>gi|4758074 crystallin, beta B3 [Homo sapiens]
Length = 211
Score = 170 bits (431), Expect = 7e-43
Identities = 84/187 (44%), Positives = 125/187 (66%), Gaps = 11/187 (5%)
Query: 29 GPWKITIYDQENFQGKRMEFTSSCPNVSERSFDNVRSLKVESGAWIGYEHTSFCGQQFIL 88
G +K+ +Y+ ENFQGKR E ++ CP++++ + V S++VESG W+ +E +F G+QF+L
Sbjct: 22 GSYKVILYELENFQGKRCELSAECPSLTDSLLEKVGSIQVESGPWLAFESRAFRGEQFVL 81
Query: 89 ERGEYPRWDAWSGSNAYHIERLMSFRPICSANHKESKMTIFEKENFIGRQWEI-SDDYPS 147
E+G+YPRWDAW SN+ + L+S RP+ + + K+ +FE F GR+ EI DD PS
Sbjct: 82 EKGDYPRWDAW--SNSRDSDSLLSLRPL-NIDSPHHKLHLFENPAFSGRKMEIVDDDVPS 138
Query: 148 LQAMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQYILECDHHGGDYKHWREWGSHAQTSQI 207
L A G F + V S++ +G WV Y++PGYRG QY+ E G+Y+HW EW A Q+
Sbjct: 139 LWAHG-FQDRVASVRAINGTWVGYEFPGYRGRQYVFE----RGEYRHWNEW--DASQPQL 191
Query: 208 QSIRRIQ 214
QS+RRI+
Sbjct: 192 QSVRRIR 198
>gi|4503063 crystallin, beta B2 [Homo sapiens]
Length = 205
Score = 166 bits (421), Expect = 1e-41
Identities = 88/191 (46%), Positives = 121/191 (63%), Gaps = 12/191 (6%)
Query: 25 PGSLGPWKITIYDQENFQGKRMEFTSSCPNVSERSFDNVRSLKVESGAWIGYEHTSFCGQ 84
P SL P KI I++QENFQG E CPN+ E + S+ V++G W+GYE + G+
Sbjct: 12 PQSLNP-KIIIFEQENFQGHSHELNGPCPNLKETGVEKAGSVLVQAGPWVGYEQANCKGE 70
Query: 85 QFILERGEYPRWDAWSGSNAYHIERLMSFRPICSANHKESKMTIFEKENFIGRQWE-ISD 143
QF+ E+GEYPRWD+W+ S + L S RPI + +E K+ ++E NF G++ E I D
Sbjct: 71 QFVFEKGEYPRWDSWTSSR--RTDSLSSLRPI-KVDSQEHKIILYENPNFTGKKMEIIDD 127
Query: 144 DYPSLQAMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQYILECDHHGGDYKHWREWGSHAQ 203
D PS A G + +V S+++QSG WV YQYPGYRG QY+LE GDYK ++G A
Sbjct: 128 DVPSFHAHG-YQEKVSSVRVQSGTWVGYQYPGYRGLQYLLE----KGDYKDSSDFG--AP 180
Query: 204 TSQIQSIRRIQ 214
Q+QS+RRI+
Sbjct: 181 HPQVQSVRRIR 191
Score = 55.8 bits (133), Expect = 3e-08
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 15 TTKMAQTNPTPGSLGPWKITIYDQENFQGKRME-FTSSCPNVSERSF-DNVRSLKVESGA 72
T ++ P KI +Y+ NF GK+ME P+ + + V S++V+SG
Sbjct: 91 TDSLSSLRPIKVDSQEHKIILYENPNFTGKKMEIIDDDVPSFHAHGYQEKVSSVRVQSGT 150
Query: 73 WIGYEHTSFCGQQFILERGEY 93
W+GY++ + G Q++LE+G+Y
Sbjct: 151 WVGYQYPGYRGLQYLLEKGDY 171
>gi|8922120 crystallin, gamma S [Homo sapiens]
Length = 178
Score = 119 bits (299), Expect = 1e-27
Identities = 66/182 (36%), Positives = 99/182 (54%), Gaps = 12/182 (6%)
Query: 32 KITIYDQENFQGKRMEFTSSCPNVSERSFDNVRSLKVESGAWIGYEHTSFCGQQFILERG 91
KIT Y+ +NFQG+R + C + S+KVE G W YE +F G +IL +G
Sbjct: 7 KITFYEDKNFQGRRYDCDCDCADF-HTYLSRCNSIKVEGGTWAVYERPNFAGYMYILPQG 65
Query: 92 EYPRWDAWSGSNAYHIERLMSFRPICSANHKESKMTIFEKENFIGRQWEISDDYPSLQAM 151
EYP + W G N +RL S R + + + K+ IFEK +F G+ +E ++D PS+
Sbjct: 66 EYPEYQRWMGLN----DRLSSCRAVHLPSGGQYKIQIFEKGDFSGQMYETTEDCPSIMEQ 121
Query: 152 GWFNNEVGSMKIQSGAWVCYQYPGYRGYQYILECDHHGGDYKHWREWGSHAQTSQIQSIR 211
+ E+ S K+ G W+ Y+ P YRG QY+L+ +Y+ +WG A + +QS R
Sbjct: 122 -FHMREIHSCKVLEGVWIFYELPNYRGRQYLLD----KKEYRKPIDWG--AASPAVQSFR 174
Query: 212 RI 213
RI
Sbjct: 175 RI 176
Score = 55.5 bits (132), Expect = 3e-08
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 29 GPWKITIYDQENFQGKRMEFTSSCPNVSER-SFDNVRSLKVESGAWIGYEHTSFCGQQFI 87
G +KI I+++ +F G+ E T CP++ E+ + S KV G WI YE ++ G+Q++
Sbjct: 92 GQYKIQIFEKGDFSGQMYETTEDCPSIMEQFHMREIHSCKVLEGVWIFYELPNYRGRQYL 151
Query: 88 LERGEYPRWDAWSGSNAYHIERLMSFRPI 116
L++ EY + W ++ + SFR I
Sbjct: 152 LDKKEYRKPIDWGAAS----PAVQSFRRI 176
Score = 48.9 bits (115), Expect = 3e-06
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 124 SKMTIFEKENFIGRQWEISDDYPSLQAMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQYIL 183
+K+T +E +NF GR+++ D + + S+K++ G W Y+ P + GY YIL
Sbjct: 6 TKITFYEDKNFQGRRYDCDCDCADFHT---YLSRCNSIKVEGGTWAVYERPNFAGYMYIL 62
Query: 184 ECDHHGGDYKHWREW 198
G+Y ++ W
Sbjct: 63 P----QGEYPEYQRW 73
>gi|10518338 crystallin, gamma C [Homo sapiens]
Length = 174
Score = 118 bits (295), Expect = 4e-27
Identities = 65/183 (35%), Positives = 103/183 (56%), Gaps = 16/183 (8%)
Query: 32 KITIYDQENFQGKRMEFTSSCPNVSERSFDNVRSLKVESGAWIGYEHTSFCGQQFILERG 91
KIT Y+ FQG+ E T+ CPN+ + F S++VESG W+ YE ++ GQQ++L RG
Sbjct: 3 KITFYEDRAFQGRSYETTTDCPNL-QPYFSRCNSIRVESGCWMLYERPNYQGQQYLLRRG 61
Query: 92 EYPRWDAWSGSNAYHIERLMSFRPICSANHKES-KMTIFEKENFIGRQWEISDDYPSLQA 150
EYP + W G + S R C S ++ ++E+E+ G E+S+D PS+Q
Sbjct: 62 EYPDYQQWMGLSD-------SIRSCCLIPQTVSHRLRLYEREDHKGLMMELSEDCPSIQD 114
Query: 151 MGWFNNEVGSMKIQSGAWVCYQYPGYRGYQYILECDHHGGDYKHWREWGSHAQTSQIQSI 210
+ +E+ S+ + G WV Y+ P YRG QY+L +Y+ ++WG A ++ S+
Sbjct: 115 R-FHLSEIRSLHVLEGCWVLYELPNYRGRQYLLRPQ----EYRRCQDWG--AMDAKAGSL 167
Query: 211 RRI 213
RR+
Sbjct: 168 RRV 170
>gi|148491074 crystallin, gamma B [Homo sapiens]
Length = 175
Score = 114 bits (285), Expect = 6e-26
Identities = 62/184 (33%), Positives = 102/184 (55%), Gaps = 17/184 (9%)
Query: 32 KITIYDQENFQGKRMEFTSSCPNVSERSFDNVRSLKVESGAWIGYEHTSFCGQQFILERG 91
KIT Y+ FQG+ E T+ CPN+ + F S++VESG W+ YE ++ G Q+ L RG
Sbjct: 3 KITFYEDRAFQGRSYECTTDCPNL-QPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRG 61
Query: 92 EYPRWDAWSGSNAYHIERLMSFRPIC--SANHKESKMTIFEKENFIGRQWEISDDYPSLQ 149
EYP + W G + S R C + +M I++++ G+ E++DD S+Q
Sbjct: 62 EYPDYQQWMGLSD-------SIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCISVQ 114
Query: 150 AMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQYILECDHHGGDYKHWREWGSHAQTSQIQS 209
+ E+ S+ + G+W+ Y+ P YRG QY+L G+Y+ + +WG A +++ S
Sbjct: 115 DR-FHLTEIHSLNVLEGSWILYEMPNYRGRQYLL----RPGEYRRFLDWG--APNAKVGS 167
Query: 210 IRRI 213
+RR+
Sbjct: 168 LRRV 171
>gi|148491057 crystallin, gamma A [Homo sapiens]
Length = 174
Score = 105 bits (263), Expect = 2e-23
Identities = 58/182 (31%), Positives = 100/182 (54%), Gaps = 14/182 (7%)
Query: 32 KITIYDQENFQGKRMEFTSSCPNVSERSFDNVRSLKVESGAWIGYEHTSFCGQQFILERG 91
KIT Y+ +FQG+ S CPN+ F S++V+SG W+ YE ++ G Q+ L RG
Sbjct: 3 KITFYEDRDFQGRCYNCISDCPNLRVY-FSRCNSIRVDSGCWMLYERPNYQGHQYFLRRG 61
Query: 92 EYPRWDAWSGSNAYHIERLMSFRPICSANHKESKMTIFEKENFIGRQWEISDDYPSLQAM 151
+YP + W G + + + S R I + K+ ++E++++ G E++DD + +
Sbjct: 62 KYPDYQHWMGLS----DSVQSCRII--PHTSSHKLRLYERDDYRGLMSELTDDCACVPEL 115
Query: 152 GWFNNEVGSMKIQSGAWVCYQYPGYRGYQYILECDHHGGDYKHWREWGSHAQTSQIQSIR 211
+ E+ S+ + G WV Y+ P YRG QY+L GDY+ + +WG +++ S+R
Sbjct: 116 -FRLPEIYSLHVLEGCWVLYEMPNYRGRQYLL----RPGDYRRYHDWG--GADAKVGSLR 168
Query: 212 RI 213
R+
Sbjct: 169 RV 170
>gi|13377002 crystallin, gamma D [Homo sapiens]
Length = 174
Score = 104 bits (260), Expect = 5e-23
Identities = 61/183 (33%), Positives = 103/183 (56%), Gaps = 16/183 (8%)
Query: 32 KITIYDQENFQGKRMEFTSSCPNVSERSFDNVRSLKVESGAWIGYEHTSFCGQQFILERG 91
KIT+Y+ FQG+ E +S PN+ + S +V+SG W+ YE ++ G Q+ L RG
Sbjct: 3 KITLYEDRGFQGRHYECSSDHPNL-QPYLSRCNSARVDSGCWMLYEQPNYSGLQYFLRRG 61
Query: 92 EYPRWDAWSG-SNAYHIERLMSFRPICSANHKESKMTIFEKENFIGRQWEISDDYPSLQA 150
+Y W G S++ RL+ S +H ++ ++E+E++ G+ E ++D LQ
Sbjct: 62 DYADHQQWMGLSDSVRSCRLIPH----SGSH---RIRLYEREDYRGQMIEFTEDCSCLQD 114
Query: 151 MGWFNNEVGSMKIQSGAWVCYQYPGYRGYQYILECDHHGGDYKHWREWGSHAQTSQIQSI 210
F NE+ S+ + G+WV Y+ YRG QY+L GDY+ +++WG A +++ S+
Sbjct: 115 RFRF-NEIHSLNVLEGSWVLYELSNYRGRQYLL----MPGDYRRYQDWG--ATNARVGSL 167
Query: 211 RRI 213
RR+
Sbjct: 168 RRV 170
Score = 65.1 bits (157), Expect = 4e-11
Identities = 27/77 (35%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 29 GPWKITIYDQENFQGKRMEFTSSCPNVSER-SFDNVRSLKVESGAWIGYEHTSFCGQQFI 87
G +I +Y++E+++G+ +EFT C + +R F+ + SL V G+W+ YE +++ G+Q++
Sbjct: 86 GSHRIRLYEREDYRGQMIEFTEDCSCLQDRFRFNEIHSLNVLEGSWVLYELSNYRGRQYL 145
Query: 88 LERGEYPRWDAWSGSNA 104
L G+Y R+ W +NA
Sbjct: 146 LMPGDYRRYQDWGATNA 162
>gi|21389517 gammaN-crystallin [Homo sapiens]
Length = 182
Score = 103 bits (256), Expect = 1e-22
Identities = 55/140 (39%), Positives = 82/140 (58%), Gaps = 8/140 (5%)
Query: 32 KITIYDQENFQGKRMEFTSSCPNVSERSFDN-VRSLKVESGAWIGYEHTSFCGQQFILER 90
KIT+Y+ ++F G+++E C N +R F N V S+ VESGAW+ + H F GQQFILE
Sbjct: 7 KITLYEGKHFTGQKLEVFGDCDNFQDRGFMNRVNSIHVESGAWVCFNHPDFRGQQFILEH 66
Query: 91 GEYPRWDAWSGSNAYHIERLMSFRPICSANHKESKMTIFEKENFIGRQWEISDDYPSLQA 150
G+YP + W+ H + + S RP+ + + ++ IFE NF G+ E +D P LQ+
Sbjct: 67 GDYPDFFRWNS----HSDHMGSCRPV-GMHGEHFRLEIFEGCNFTGQCLEFLEDSPFLQS 121
Query: 151 MGWFNNEVGSMKI--QSGAW 168
GW N V ++K+ AW
Sbjct: 122 RGWVKNCVNTIKVYGDGAAW 141
Score = 68.9 bits (167), Expect = 3e-12
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 122 KESKMTIFEKENFIGRQWEISDDYPSLQAMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQY 181
+ K+T++E ++F G++ E+ D + Q G F N V S+ ++SGAWVC+ +P +RG Q+
Sbjct: 4 RSGKITLYEGKHFTGQKLEVFGDCDNFQDRG-FMNRVNSIHVESGAWVCFNHPDFRGQQF 62
Query: 182 ILECDHHGGDYKHWREWGSHA 202
ILE GDY + W SH+
Sbjct: 63 ILE----HGDYPDFFRWNSHS 79
>gi|89886227 absent in melanoma 1-like [Homo sapiens]
Length = 616
Score = 95.9 bits (237), Expect = 2e-20
Identities = 63/214 (29%), Positives = 102/214 (47%), Gaps = 31/214 (14%)
Query: 21 TNPTPGSLGPWKI-------------TIYDQENFQGKRMEFTSSCPNVSERS------FD 61
++P+ GSL P ++ +Y+ FQG+ E + N+ +
Sbjct: 100 SDPSVGSLKPMRLGCPSVEKPGEPRAVVYEAPGFQGRSWEVSRDIYNLQQPEDSQSPHLA 159
Query: 62 NVRSLKVESGAWIGYEHTSFCGQQFILERGEYPRWDAWSGSNAYHIERLMSFRPICSANH 121
+V SL+V G W+GYE F G Q++LE GEYP W W G + E L S R + +
Sbjct: 160 SVGSLRVLGGCWVGYEKEGFRGHQYLLEEGEYPDWSHWGG----YDELLTSLR-VIRTDF 214
Query: 122 KESKMTIFEKENFIGRQWEISDDYPSLQAMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQY 181
+ + +FE +F G E+S P ++ + ++ + SG WV YQ G+ G QY
Sbjct: 215 GDPAVVLFEAMDFEGHGVEVSKALPDVELV-QHGPSTQAIHVLSGVWVAYQEVGFSGEQY 273
Query: 182 ILECDHHGGDYKHWREWGSHAQTSQIQSIRRIQQ 215
+LE G Y++ +WG A S + S++ + Q
Sbjct: 274 VLE----KGVYRNCEDWG--AGNSTLASLQPVLQ 301
Score = 94.4 bits (233), Expect = 7e-20
Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 14/178 (7%)
Query: 32 KITIYDQENFQGKRMEFTSSCPNVS--ERSFDNVRSLKVESGAWIGYEHTSFCGQQFILE 89
+I+++ +E +G++++ T + N E+ V S V +G W+ Y F +ILE
Sbjct: 29 EISLFSEEGLKGEQVKLTEALKNSQGLEKPLQ-VASATVSAGLWLLYPKPLFEDTPYILE 87
Query: 90 RGEYPRWDAWSGSNAYHIERLMSFRPICSANHK--ESKMTIFEKENFIGRQWEISDDYPS 147
GEYP +AW G++ + L R C + K E + ++E F GR WE+S D +
Sbjct: 88 PGEYPTSEAW-GTSDPSVGSLKPMRLGCPSVEKPGEPRAVVYEAPGFQGRSWEVSRDIYN 146
Query: 148 LQ----AMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQYILECDHHGGDYKHWREWGSH 201
LQ + VGS+++ G WV Y+ G+RG+QY+LE G+Y W WG +
Sbjct: 147 LQQPEDSQSPHLASVGSLRVLGGCWVGYEKEGFRGHQYLLE----EGEYPDWSHWGGY 200
Score = 75.5 bits (184), Expect = 3e-14
Identities = 39/156 (25%), Positives = 79/156 (50%), Gaps = 13/156 (8%)
Query: 33 ITIYDQENFQGKRMEFTSSCPNVS-ERSFDNVRSLKVESGAWIGYEHTSFCGQQFILERG 91
+ +++ +F+G +E + + P+V + + +++ V SG W+ Y+ F G+Q++LE+G
Sbjct: 219 VVLFEAMDFEGHGVEVSKALPDVELVQHGPSTQAIHVLSGVWVAYQEVGFSGEQYVLEKG 278
Query: 92 EYPRWDAWSGSNAYHIERLMSFRPICSAN----HKESKMTIFEKENFIGRQWEISDDYPS 147
Y + W N+ L S +P+ H SK+ +F + +F+G + DD +
Sbjct: 279 VYRNCEDWGAGNS----TLASLQPVLQVGEHDLHFVSKIQLFSRPDFLGDHFSFEDDQAA 334
Query: 148 LQAMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQYIL 183
L A + S ++ G+W+ + + G Q+IL
Sbjct: 335 LPA----SFRPQSCRVHGGSWILFDETNFEGDQHIL 366
Score = 70.5 bits (171), Expect = 1e-12
Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 16/185 (8%)
Query: 32 KITIYDQENFQGKRMEFTSSCPNVSERSFDNVRSLKVESGAWIGYEHTSFCGQQFILERG 91
KI ++ + +F G F + SF +S +V G+WI ++ T+F G Q IL G
Sbjct: 312 KIQLFSRPDFLGDHFSFEDDQAALPA-SF-RPQSCRVHGGSWILFDETNFEGDQHILSEG 369
Query: 92 EYPRWDAWSGSNAYHIERLMSFRPICSANHKESKMTIFEKENFIGRQWEISDDYPSLQAM 151
E+P A + + L S + E + ++ E F G++ E+S + SLQA
Sbjct: 370 EFPTLTAMGCLASTVLGSLQK----VSLHFSEPSIFLYGLECFEGKEIELSREVRSLQAE 425
Query: 152 GWFNNEVGSMKIQSGAWVCYQYPGYRGYQYIL-ECDHHGGDYKHWREWGSHAQTSQIQSI 210
G FNN V S++I+ G WV ++ +RG Q+++ C+ W +++ T ++ S+
Sbjct: 426 G-FNNHVLSVRIKGGIWVLCEHSDFRGRQWLVGSCE--------ITNWLTYSGTQRVGSL 476
Query: 211 RRIQQ 215
I+Q
Sbjct: 477 YPIKQ 481
>gi|90403579 beta-gamma crystallin domain containing 3 [Homo
sapiens]
Length = 1022
Score = 94.4 bits (233), Expect = 7e-20
Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 18/189 (9%)
Query: 32 KITIYDQENFQGKRMEFTS---SCPNVSERS--FDNVRSLKVESGAWIGYEHTSFCGQQF 86
K+ IY++ +F G+ EF+ S PN + + F + S++V G W+ YE F GQQF
Sbjct: 532 KVIIYEKPHFHGQAKEFSEHIDSVPNFLKNNGDFHRIGSIRVIGGVWVAYEKEHFKGQQF 591
Query: 87 ILERGEYPRWDAWSGSNAYHIERLMSFRPICSANHKESKMTIFEKENFIGRQWEISD-DY 145
+LE G++ +A ++ ++SFR + AN ES +T+FE + G+ +I++ +
Sbjct: 592 LLEEGDFEDSNACGALSS----PILSFRYL-QANFIESSVTLFESDLESGKFIDITNQEI 646
Query: 146 PSLQAMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQYILECDHHGGDYKHWREWGSHAQTS 205
L+ +G F ++ S+ ++SG WV YQ + G QYILE G YK + +WG +
Sbjct: 647 SDLEEIG-FGSKTRSIHVKSGVWVAYQQKFFCGEQYILE----KGKYKCFFDWG--GSNN 699
Query: 206 QIQSIRRIQ 214
I SIR IQ
Sbjct: 700 IIMSIRPIQ 708
Score = 69.7 bits (169), Expect = 2e-12
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 21/187 (11%)
Query: 33 ITIYDQENFQGKRMEFTSS-CPNVSERSFDN-VRSLKVESGAWIGYEHTSFCGQQFILER 90
+T+++ + GK ++ T+ ++ E F + RS+ V+SG W+ Y+ FCG+Q+ILE+
Sbjct: 626 VTLFESDLESGKFIDITNQEISDLEEIGFGSKTRSIHVKSGVWVAYQQKFFCGEQYILEK 685
Query: 91 GEYPRWDAWSGSNAYHIERLMSFRPI----CSANHKESKMTIFEKENFIGRQWEISDDYP 146
G+Y + W GSN +MS RPI N + F K F G + +++
Sbjct: 686 GKYKCFFDWGGSN----NIIMSIRPIQLEPLGINEPPHLLKAFSKPGFQGECIDFTEETS 741
Query: 147 SLQAMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQYILECDHHGGDYKHWREWGSHAQTSQ 206
L ++ S K+ G W+ Y Y+ ++ C G Y G A S+
Sbjct: 742 DLTSL-----MPCSFKVLRGCWLLY----YQEDMFVNHCVLEEGLYADLTSCGCPA--SK 790
Query: 207 IQSIRRI 213
++S++ I
Sbjct: 791 VKSLKPI 797
Score = 54.7 bits (130), Expect = 6e-08
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 18/172 (10%)
Query: 22 NPTPGSLGPWKITIYDQENFQGKRMEFTSSCPNVSERSFDNVRSLKVESGAWIGYEHTSF 81
NP PG K+ IYD K+ E + P+ + SF N +KV G WI YE F
Sbjct: 343 NPRPG-----KMVIYDLHESTYKQ-EVYCNIPDATSWSFPNGVLIKVVRGCWILYEKPHF 396
Query: 82 CGQQFILERGEYPRWDAWSGSNAYHIER---LMSFRPI---CSANHKESKMTIFEKENFI 135
GQ+ +LE GE W N H +R L S + + CS ++ +F + +
Sbjct: 397 RGQKCVLEEGEKVLNRDWILQNRRHPQRNFILGSLKRVLKDCSI----PEIELFPQSDPA 452
Query: 136 GRQWEISDDYPSLQAMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQYILECDH 187
I P+L+ + ++ S ++SG W+ Y ++G +LE DH
Sbjct: 453 CCPVYIQRAVPNLEELN--ISKSVSFTVKSGVWLAYPDINFKGQATVLEEDH 502
Score = 46.6 bits (109), Expect = 2e-05
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 14 PTTKMAQTNPTPGSLGPWKITIYDQENFQGKRMEFTSSCPNVSERSFD-NVRSLKVESGA 72
P +K+ P I+++ E+ +G+ + + +V + +S+ V+SG
Sbjct: 787 PASKVKSLKPIDYVFEEPSISLFALEHCEGRELHLEEAVNSVLNKDLHFYTQSVWVKSGL 846
Query: 73 WIGYEHTSFCGQQFILERGEYPRWDAWS 100
WI YE ++F G+Q +L E P W A+S
Sbjct: 847 WIAYEGSNFLGRQILLRPNEIPNWTAFS 874
Score = 39.3 bits (90), Expect = 0.003
Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 11/173 (6%)
Query: 30 PWKITIYDQENFQGKRMEFTSSCPNVSERSFDNVRSLKVESGAWIGYEHTSFCGQQFILE 89
P + + + FQG+ ++FT +++ S KV G W+ Y +LE
Sbjct: 718 PHLLKAFSKPGFQGECIDFTEETSDLTSLM---PCSFKVLRGCWLLYYQEDMFVNHCVLE 774
Query: 90 RGEYPRWDAWSGSNAYHIERLMSFRPICSANHKESKMTIFEKENFIGRQWEISDDYPSLQ 149
G Y A S ++ S +PI +E +++F E+ GR+ + + S+
Sbjct: 775 EGLY----ADLTSCGCPASKVKSLKPIDYV-FEEPSISLFALEHCEGRELHLEEAVNSVL 829
Query: 150 AMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQYILECDH--HGGDYKHWREWGS 200
+ S+ ++SG W+ Y+ + G Q +L + + + W+ GS
Sbjct: 830 NKD-LHFYTQSVWVKSGLWIAYEGSNFLGRQILLRPNEIPNWTAFSRWKTIGS 881
>gi|62988361 absent in melanoma 1 [Homo sapiens]
Length = 1723
Score = 93.6 bits (231), Expect = 1e-19
Identities = 62/195 (31%), Positives = 95/195 (48%), Gaps = 26/195 (13%)
Query: 32 KITIYDQENFQGKRMEF-TSSCPNVSERS------------FDNVRSLKVESGAWIGYEH 78
K+ +Y++ F+GK +E T C V E F +V S+KV G W+ YE
Sbjct: 1219 KVVVYEKPFFEGKCVELETGMCSFVMEGGETEEATGDDHLPFTSVGSMKVLRGIWVAYEK 1278
Query: 79 TSFCGQQFILERGEYPRWDAWSGSNAYHIERLMSFRPICSANHKESKMTIFEKENF--IG 136
F G Q++LE GEY W AW G N L S RPI + + M ++ ++NF G
Sbjct: 1279 PGFTGHQYLLEEGEYRDWKAWGGYNG----ELQSLRPIL-GDFSNAHMIMYSEKNFGSKG 1333
Query: 137 RQWEISDDYPSLQAMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQYILECDHHGGDYKHWR 196
++ +L+ G + + S+ + SG WV Y+ P + G QYIL+ G Y +
Sbjct: 1334 SSIDVLGIVANLKETG-YGVKTQSINVLSGVWVAYENPDFTGEQYILD----KGFYTSFE 1388
Query: 197 EW-GSHAQTSQIQSI 210
+W G + + S +Q I
Sbjct: 1389 DWGGKNCKISSVQPI 1403
Score = 92.8 bits (229), Expect = 2e-19
Identities = 58/165 (35%), Positives = 80/165 (48%), Gaps = 26/165 (15%)
Query: 65 SLKVESGAWIGYEHTSFCGQQFILERGEYPRWDAWSGSNAYHIERLMSFRPICSANHK-- 122
S+KV G W+ YE F G FILE GEYP W AY + S RP+ K
Sbjct: 1158 SMKVHWGTWLIYEEPGFQGVPFILEPGEYPDLSFWDTEAAY----IGSMRPLKMGGRKVE 1213
Query: 123 ---ESKMTIFEKENFIGRQWEISDDYPSLQAMGWFNNE-----------VGSMKIQSGAW 168
+ K+ ++EK F G+ E+ S G E VGSMK+ G W
Sbjct: 1214 FPTDPKVVVYEKPFFEGKCVELETGMCSFVMEGGETEEATGDDHLPFTSVGSMKVLRGIW 1273
Query: 169 VCYQYPGYRGYQYILECDHHGGDYKHWREWGSHAQTSQIQSIRRI 213
V Y+ PG+ G+QY+LE G+Y+ W+ WG + ++QS+R I
Sbjct: 1274 VAYEKPGFTGHQYLLE----EGEYRDWKAWGGY--NGELQSLRPI 1312
Score = 84.3 bits (207), Expect = 7e-17
Identities = 47/177 (26%), Positives = 90/177 (50%), Gaps = 11/177 (6%)
Query: 32 KITIYDQENFQGKRMEFTSSCPNVSERSFDNVRSLKVESGAWIGYEHTSFCGQQFILERG 91
+I ++ + FQG F + + + SF + +S +V G+W+ Y+ +F G Q++LE G
Sbjct: 1416 QIHLFSEPQFQGHSQSFEETTSQIDD-SF-STKSCRVSGGSWVVYDGENFTGNQYVLEEG 1473
Query: 92 EYPRWDAWSGSNAYHIERLMSFRPICSANHKESKMTIFEKENFIGRQWEISDDYPSLQAM 151
YP A + L E + +FE+E+F G++ E++ + +L+++
Sbjct: 1474 HYPCLSAMGCPPGATFKSLR----FIDVEFSEPTIILFEREDFKGKKIELNAETVNLRSL 1529
Query: 152 GWFNNEVGSMKIQSGAWVCYQYPGYRGYQYILECDHHGGDYKHWREWGSHAQTSQIQ 208
G FN ++ S+++ G WV Y+Y YRG Q++L + +W E+ Q ++
Sbjct: 1530 G-FNTQIRSVQVIGGIWVTYEYGSYRGRQFLLS----PAEVPNWYEFSGCRQIGSLR 1581
Score = 69.3 bits (168), Expect = 2e-12
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 18/199 (9%)
Query: 12 TLPTTKMAQTNPTPGSLGPWKITIYDQENFQGKRMEFTSSCPNVSERSFDNVRSLKVESG 71
TL + + NP PG K+ IY + + K +E S + S S V +KV G
Sbjct: 1008 TLRGSVQNKLNPRPG-----KVVIYSEPDVSEKCIEVFSDIQDCSSWSLSPVILIKVVRG 1062
Query: 72 AWIGYEHTSFCGQQFILERGEYPRWDAWSGSNAY-HIERLMSFRPICSA-------NHKE 123
WI YE +F G LE GE W + E S +P+ +++
Sbjct: 1063 CWILYEQPNFEGHSIPLEEGELELSGLWGIEDILERHEEAESDKPVVIGSIRHVVQDYRV 1122
Query: 124 SKMTIFEKENFIGRQWEISDDYPSLQAMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQYIL 183
S + +F + +G DD +Q G + SMK+ G W+ Y+ PG++G +IL
Sbjct: 1123 SHIDLFTEPEGLGILSSYFDDTEEMQGFG-VMQKTCSMKVHWGTWLIYEEPGFQGVPFIL 1181
Query: 184 ECDHHGGDYKHWREWGSHA 202
E G+Y W + A
Sbjct: 1182 E----PGEYPDLSFWDTEA 1196
>gi|239745404 PREDICTED: hypothetical protein XP_002343488 [Homo
sapiens]
Length = 183
Score = 29.3 bits (64), Expect = 2.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 5 AEQQELETLPTTKMAQTNPTPGSLGPWKITIYDQENFQGKRMEFTS 50
+ Q EL T+ T+ + + P + PWKIT EN R+ F S
Sbjct: 69 SRQPELVTVFTSNLYNQDSIPQTTVPWKITATSAENRVTFRVRFDS 114
>gi|19923586 nuclear receptor binding SET domain protein 1 isoform b
[Homo sapiens]
Length = 2696
Score = 28.5 bits (62), Expect = 4.5
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 2 ETQAEQQELETLPTTKMAQTNPTPGSLGPWKITIYDQEN-----FQGKRMEFTSSCPNVS 56
ETQ +Q E + + A P P SLG ITI +Q N FQ TS+ N+
Sbjct: 234 ETQKNKQRNEVDGSNEKAALLPAPFSLGDTNITIEEQLNSINLSFQDDPDSSTSTLGNML 293
Query: 57 E 57
E
Sbjct: 294 E 294
>gi|39777614 SS18-like protein 1 [Homo sapiens]
Length = 396
Score = 28.1 bits (61), Expect = 5.9
Identities = 45/221 (20%), Positives = 80/221 (36%), Gaps = 33/221 (14%)
Query: 6 EQQELETLPTTKMAQTNPTPGSLGPWKITIYDQENFQGKRMEFTSSCPNVSERSFDNVRS 65
+Q TLPTT M+ + P GP QG M+ + N R+ N++S
Sbjct: 133 QQTAPNTLPTTSMSISGPGYSHAGPAS---------QGVPMQGQGTIGNYVSRTNINMQS 183
Query: 66 LKVE-----------SGAWIGYEHTSFCGQQFILERGEYPRWDAWSGSNAYHIERLMSFR 114
V S A G +H + GQ I G+ GS+ + +R
Sbjct: 184 NPVSMMQQQAATSHYSSAQGGSQH--YQGQSSIAMMGQ-----GSQGSSMMGQRPMAPYR 236
Query: 115 PICSANHKESKMTIFEKENFIGRQWEISDDYPSLQAMGWFNNEVGSMKIQSGAWVCYQYP 174
P + + S +E + G Q+ S ++ + G Q ++ Y
Sbjct: 237 P----SQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGHGDYAYQQSSYTEQSYD 292
Query: 175 GYRGYQYILECDHHGGDYKHWREWGSHAQTSQIQSIRRIQQ 215
R ++ + + GG+ ++ ++ + Q + Q QQ
Sbjct: 293 --RSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQ 331
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,890,860
Number of Sequences: 37866
Number of extensions: 380435
Number of successful extensions: 826
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 693
Number of HSP's gapped (non-prelim): 38
length of query: 215
length of database: 18,247,518
effective HSP length: 98
effective length of query: 117
effective length of database: 14,536,650
effective search space: 1700788050
effective search space used: 1700788050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.