Search of human proteins with 24308201

Search of human proteins with 24308201

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|24308201 chromosome 20 open reading frame 3 [Homo sapiens]
         (416 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|24308201 chromosome 20 open reading frame 3 [Homo sapiens]         834   0.0  
gi|13449277 cytochrome P450, family 2, subfamily S, polypeptide ...    32   1.1  
gi|66529396 paraoxonase 2 isoform 2 [Homo sapiens]                     32   1.4  
gi|119709832 low density lipoprotein receptor-related protein 5 ...    31   2.4  
gi|239753433 PREDICTED: hypothetical protein XP_002345652 [Homo ...    31   2.4  
gi|119943102 CREB binding protein isoform b [Homo sapiens]             30   3.1  
gi|119943104 CREB binding protein isoform a [Homo sapiens]             30   3.1  
gi|28559039 mediator complex subunit 1 [Homo sapiens]                  30   3.1  
gi|19923106 paraoxonase 1 precursor [Homo sapiens]                     30   4.0  
gi|60593056 hypothetical protein LOC283948 [Homo sapiens]              30   4.0  
gi|148727288 low density lipoprotein receptor-related protein 6 ...    29   6.9  
gi|66529294 paraoxonase 2 isoform 1 [Homo sapiens]                     29   6.9  
gi|157168372 amyotrophic lateral sclerosis 2 (juvenile) chromoso...    29   6.9  
gi|117956409 amyotrophic lateral sclerosis 2 (juvenile) chromoso...    29   6.9  

>gi|24308201 chromosome 20 open reading frame 3 [Homo sapiens]
          Length = 416

 Score =  834 bits (2155), Expect = 0.0
 Identities = 416/416 (100%), Positives = 416/416 (100%)

Query: 1   MSEADGLRQRRPLRPQVVTDDDGQAPEAKDGSSFSGRVFRVTFLMLAVSLTVPLLGAMML 60
           MSEADGLRQRRPLRPQVVTDDDGQAPEAKDGSSFSGRVFRVTFLMLAVSLTVPLLGAMML
Sbjct: 1   MSEADGLRQRRPLRPQVVTDDDGQAPEAKDGSSFSGRVFRVTFLMLAVSLTVPLLGAMML 60

Query: 61  LESPIDPQPLSFKEPPLLLGVLHPNTKLRQAERLFENQLVGPESIAHIGDVMFTGTADGR 120
           LESPIDPQPLSFKEPPLLLGVLHPNTKLRQAERLFENQLVGPESIAHIGDVMFTGTADGR
Sbjct: 61  LESPIDPQPLSFKEPPLLLGVLHPNTKLRQAERLFENQLVGPESIAHIGDVMFTGTADGR 120

Query: 121 VVKLENGEIETIARFGSGPCKTRDDEPVCGRPLGIRAGPNGTLFVADAYKGLFEVNPWKR 180
           VVKLENGEIETIARFGSGPCKTRDDEPVCGRPLGIRAGPNGTLFVADAYKGLFEVNPWKR
Sbjct: 121 VVKLENGEIETIARFGSGPCKTRDDEPVCGRPLGIRAGPNGTLFVADAYKGLFEVNPWKR 180

Query: 181 EVKLLLSSETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLL 240
           EVKLLLSSETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLL
Sbjct: 181 EVKLLLSSETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLL 240

Query: 241 EYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVEN 300
           EYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVEN
Sbjct: 241 EYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVEN 300

Query: 301 MPGFPDNIRPSSSGGYWVGMSTIRPNPGFSMLDFLSERPWIKRMIFKLFSQETVMKFVPR 360
           MPGFPDNIRPSSSGGYWVGMSTIRPNPGFSMLDFLSERPWIKRMIFKLFSQETVMKFVPR
Sbjct: 301 MPGFPDNIRPSSSGGYWVGMSTIRPNPGFSMLDFLSERPWIKRMIFKLFSQETVMKFVPR 360

Query: 361 YSLVLELSDSGAFRRSLHDPDGLVATYISEVHEHDGHLYLGSFRSPFLCRLSLQAV 416
           YSLVLELSDSGAFRRSLHDPDGLVATYISEVHEHDGHLYLGSFRSPFLCRLSLQAV
Sbjct: 361 YSLVLELSDSGAFRRSLHDPDGLVATYISEVHEHDGHLYLGSFRSPFLCRLSLQAV 416


>gi|13449277 cytochrome P450, family 2, subfamily S, polypeptide 1
           [Homo sapiens]
          Length = 504

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 16/143 (11%)

Query: 147 PVCGRPLGIRAGP--NGTLFVADAYKGLFEV--NPWKREVKLLLSSETPIE---GKNMSF 199
           P+ G  L +R G   +G + ++  Y  +F +   PW R V +L+  E   E   G+   F
Sbjct: 40  PLLGNLLQLRPGALYSGLMRLSKKYGPVFTIYLGPW-RPVVVLVGQEAVREALGGQAEEF 98

Query: 200 VNDLTV-----TQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLD 254
               TV     T DG  ++F++     Q R + +L +     G+    + +  E + L++
Sbjct: 99  SGRGTVAMLEGTFDGHGVFFSNGERWRQLRKFTMLALRDLGMGKREGEELIQAEARCLVE 158

Query: 255 QLRFPNGVQLSPAEDFVLVAETT 277
             +   G +  P +  +L+A+ T
Sbjct: 159 TFQ---GTEGRPFDPSLLLAQAT 178


>gi|66529396 paraoxonase 2 isoform 2 [Homo sapiens]
          Length = 342

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 17/168 (10%)

Query: 159 PNG-TLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVNDLTVTQDGRKI----- 212
           P+G + F+ + +K   E+  ++     LL  +T ++ + +  VND+T             
Sbjct: 113 PHGISTFIDNEFKNTVEIFKFEEAENSLLHLKT-VKHELLPSVNDITAVGPAHFYATNDH 171

Query: 213 YFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVL 272
           YF+D   K+    YL L         ++ Y     EVKV+ +     NG+ +SP + ++ 
Sbjct: 172 YFSDPFLKYLET-YLNLHW-----ANVVYYSP--NEVKVVAEGFDSANGINISPDDKYIY 223

Query: 273 VAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIR-PSSSGGYWVG 319
           VA+  +A    V           L V  +    DN+    SSG  WVG
Sbjct: 224 VAD-ILAHEIHVLEKHTNMNLTQLKVLELDTLVDNLSIDPSSGDIWVG 270


>gi|119709832 low density lipoprotein receptor-related protein 5
           [Homo sapiens]
          Length = 1615

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 228 LLVMEGTDDGRLLEYDTVT-REVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYV 286
           +L++    D R +  DT    ++ + +D +R    +   P E +V   +  +  IRR Y+
Sbjct: 343 VLLLARRTDLRRISLDTPDFTDIVLQVDDIRHAIAIDYDPLEGYVYWTDDEVRAIRRAYL 402

Query: 287 SGLMKGGADLFVENMPGFPDNIRPS--SSGGYWVGMSTIR 324
            G    GA   V      PD I     +   YW    T R
Sbjct: 403 DG---SGAQTLVNTEINDPDGIAVDWVARNLYWTDTGTDR 439


>gi|239753433 PREDICTED: hypothetical protein XP_002345652 [Homo
           sapiens]
          Length = 302

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 25  APEAKDGSSFSGRVFRVTFLMLAVSLTVPLLGAMMLLESPIDPQPLSFKEPPLLLGVLHP 84
           AP A  G S    V  V  L+L + + +  L    L ++P  P  LS   P LLL    P
Sbjct: 59  APAALIGGSQKVLVILVGLLLLGIDIVI--LSRERLSKAPPTPGALSSPLPQLLLAEQEP 116

Query: 85  NTKLRQAERLFE 96
            T    A+ L+E
Sbjct: 117 GTPSSTAQGLWE 128


>gi|119943102 CREB binding protein isoform b [Homo sapiens]
          Length = 2404

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 23/95 (24%), Positives = 36/95 (37%)

Query: 12  PLRPQVVTDDDGQAPEAKDGSSFSGRVFRVTFLMLAVSLTVPLLGAMMLLESPIDPQPLS 71
           P +P       GQ P    GS  S    + T  + A +           ++ P    P S
Sbjct: 847 PTQPSTPVSSSGQTPTPTPGSVPSATQTQSTPTVQAAAQAQVTPQPQTPVQPPSVATPQS 906

Query: 72  FKEPPLLLGVLHPNTKLRQAERLFENQLVGPESIA 106
            ++ P  +    P T L QA    +N++  P S+A
Sbjct: 907 SQQQPTPVHAQPPGTPLSQAAASIDNRVPTPSSVA 941


>gi|119943104 CREB binding protein isoform a [Homo sapiens]
          Length = 2442

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 23/95 (24%), Positives = 36/95 (37%)

Query: 12  PLRPQVVTDDDGQAPEAKDGSSFSGRVFRVTFLMLAVSLTVPLLGAMMLLESPIDPQPLS 71
           P +P       GQ P    GS  S    + T  + A +           ++ P    P S
Sbjct: 885 PTQPSTPVSSSGQTPTPTPGSVPSATQTQSTPTVQAAAQAQVTPQPQTPVQPPSVATPQS 944

Query: 72  FKEPPLLLGVLHPNTKLRQAERLFENQLVGPESIA 106
            ++ P  +    P T L QA    +N++  P S+A
Sbjct: 945 SQQQPTPVHAQPPGTPLSQAAASIDNRVPTPSSVA 979


>gi|28559039 mediator complex subunit 1 [Homo sapiens]
          Length = 1581

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 54/232 (23%), Positives = 80/232 (34%), Gaps = 50/232 (21%)

Query: 12  PLRPQVVTDDDGQAPEAKDGSSFSGRVFRVTFLMLAVSLTVPLLGAMMLLESPIDPQPLS 71
           P +P+  T+DD Q             +F V   M A +L  P           I P P  
Sbjct: 697 PEKPKHQTEDDFQRELFSMDVDSQNPIFDVN--MTADTLDTP----------HITPAPSQ 744

Query: 72  FKEPPLLLG--VLHPNTKLRQAERLFENQLVGPESIAHIGDVMFTGTADGRVVKLENGEI 129
              PP      V HP   +++  RL  +  +GP+    + D+                 +
Sbjct: 745 CSTPPTTYPQPVPHPQPSIQRMVRLSSSDSIGPD----VTDI-----------------L 783

Query: 130 ETIARFGSGPCKTRDDEPVCGRPL---GIRAGPNGTLFVADAYKGLFEVNPWKREVKLLL 186
             IA   S    T DD P  G PL           TLF +D ++     NP+     L+ 
Sbjct: 784 SDIAEEASKLPSTSDDCPAIGTPLRDSSSSGHSQSTLFDSDVFQTNNNENPYTDPADLIA 843

Query: 187 ------SSETPIE---GKNMSFVNDLTVTQDGR---KIYFTDSSSKWQRRDY 226
                 SS++P        + F  DL  +Q      + YF +SS      D+
Sbjct: 844 DAAGSPSSDSPTNHFFHDGVDFNPDLLNSQSQSGFGEEYFDESSQSGDNDDF 895


>gi|19923106 paraoxonase 1 precursor [Homo sapiens]
          Length = 355

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 18/99 (18%)

Query: 248 EVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVY-------VSGLMKGGADLFVEN 300
           EV+V+ +   F NG+ +SP   +V +AE    +I  VY       ++ L     +  V+N
Sbjct: 212 EVRVVAEGFDFANGINISPDGKYVYIAELLAHKI-HVYEKHANWTLTPLKSLDFNTLVDN 270

Query: 301 MPGFPDNIRPSSSGGYWVGMSTIRPNPGFSMLDFLSERP 339
           +   P+      +G  WVG     PN G  +  + SE P
Sbjct: 271 ISVDPE------TGDLWVG---CHPN-GMKIFFYDSENP 299


>gi|60593056 hypothetical protein LOC283948 [Homo sapiens]
          Length = 123

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 13/46 (28%)

Query: 143 RDDEPVC------GRPLGIRAGPNGTLFVADA-------YKGLFEV 175
           R   P+C      G+PLG+   P G L VADA       Y+GL E+
Sbjct: 77  RAGPPICLVSEGLGQPLGVACAPQGQLLVADAKDNSIKVYQGLKEL 122


>gi|148727288 low density lipoprotein receptor-related protein 6
           [Homo sapiens]
          Length = 1613

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 228 LLVMEGTDDGRLLEYDTVT-REVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYV 286
           LL++    D R +  DT    ++ + L+ +R    +   P E ++   +  +  IRR ++
Sbjct: 330 LLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFI 389

Query: 287 SGLMKGGADLFVENMPGFPDNIRPS--SSGGYWVGMSTIR 324
            G    G+   V      PD I     +   YW    T R
Sbjct: 390 DG---SGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDR 426


>gi|66529294 paraoxonase 2 isoform 1 [Homo sapiens]
          Length = 354

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 248 EVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDN 307
           EVKV+ +     NG+ +SP + ++ VA+  +A    V           L V  +    DN
Sbjct: 211 EVKVVAEGFDSANGINISPDDKYIYVAD-ILAHEIHVLEKHTNMNLTQLKVLELDTLVDN 269

Query: 308 IR-PSSSGGYWVG 319
           +    SSG  WVG
Sbjct: 270 LSIDPSSGDIWVG 282


>gi|157168372 amyotrophic lateral sclerosis 2 (juvenile) chromosome
           region, candidate 8 [Homo sapiens]
          Length = 725

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 96  ENQLVGPESIAHIGDVMFTGTADGRVVKLENGEIETI 132
           +  LV  + +  +GDV  TG  +G V ++  G+++TI
Sbjct: 639 DQNLVAMDELVEVGDVEDTGNLEGTVHRILLGDVQTI 675


>gi|117956409 amyotrophic lateral sclerosis 2 (juvenile) chromosome
           region, candidate 8 [Homo sapiens]
          Length = 725

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 96  ENQLVGPESIAHIGDVMFTGTADGRVVKLENGEIETI 132
           +  LV  + +  +GDV  TG  +G V ++  G+++TI
Sbjct: 639 DQNLVAMDELVEVGDVEDTGNLEGTVHRILLGDVQTI 675


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,377,377
Number of Sequences: 37866
Number of extensions: 754488
Number of successful extensions: 1579
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1570
Number of HSP's gapped (non-prelim): 20
length of query: 416
length of database: 18,247,518
effective HSP length: 105
effective length of query: 311
effective length of database: 14,271,588
effective search space: 4438463868
effective search space used: 4438463868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.