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Search of human proteins with 24308189
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24308189 RGM domain family, member A [Homo sapiens]
(450 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24308189 RGM domain family, member A [Homo sapiens] 932 0.0
gi|224589135 RGM domain family, member B [Homo sapiens] 399 e-111
gi|47458048 hemojuvelin isoform a precursor [Homo sapiens] 366 e-101
gi|44662823 hemojuvelin isoform b [Homo sapiens] 284 1e-76
gi|42544157 hemojuvelin isoform c [Homo sapiens] 165 9e-41
gi|47458050 hemojuvelin isoform c [Homo sapiens] 165 9e-41
gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo ... 30 3.4
gi|153791350 replication initiator 1 isoform 1 [Homo sapiens] 30 3.4
gi|153792539 replication initiator 1 isoform 1 [Homo sapiens] 30 3.4
gi|153792647 replication initiator 1 isoform 3 [Homo sapiens] 30 3.4
gi|153791994 replication initiator 1 isoform 1 [Homo sapiens] 30 3.4
gi|116292168 KRAB A domain containing 1 [Homo sapiens] 30 3.4
gi|134268640 tectorin alpha precursor [Homo sapiens] 30 4.5
gi|145386551 SH3 domain and tetratricopeptide repeats 1 [Homo sa... 30 5.8
gi|239754305 PREDICTED: hypothetical protein XP_002345935 [Homo ... 29 7.6
gi|239748844 PREDICTED: hypothetical protein XP_002346836 [Homo ... 29 7.6
gi|239742871 PREDICTED: hypothetical protein XP_002342668 [Homo ... 29 7.6
gi|27477095 nuclear receptor binding SET domain protein 1 isofor... 29 7.6
gi|19923586 nuclear receptor binding SET domain protein 1 isofor... 29 7.6
gi|11560152 zinc finger protein 335 [Homo sapiens] 29 9.9
gi|194097489 RAN binding protein 3 isoform RANBP3-b [Homo sapiens] 29 9.9
gi|194097487 RAN binding protein 3 isoform RANBP3-a [Homo sapiens] 29 9.9
gi|6466466 RAN binding protein 3 isoform RANBP3-d [Homo sapiens] 29 9.9
gi|7662160 hypothetical protein LOC9813 [Homo sapiens] 29 9.9
gi|112789555 ADAM metallopeptidase with thrombospondin type 1 mo... 29 9.9
>gi|24308189 RGM domain family, member A [Homo sapiens]
Length = 450
Score = 932 bits (2410), Expect = 0.0
Identities = 450/450 (100%), Positives = 450/450 (100%)
Query: 1 MQPPRERLVVTGRAGWMGMGRGAGRSALGFWPTLAFLLCSFPAATSPCKILKCNSEFWSA 60
MQPPRERLVVTGRAGWMGMGRGAGRSALGFWPTLAFLLCSFPAATSPCKILKCNSEFWSA
Sbjct: 1 MQPPRERLVVTGRAGWMGMGRGAGRSALGFWPTLAFLLCSFPAATSPCKILKCNSEFWSA 60
Query: 61 TSGSHAPASDDTPEFCAALRSYALCTRRTARTCRGDLAYHSAVHGIEDLMSQHNCSKDGP 120
TSGSHAPASDDTPEFCAALRSYALCTRRTARTCRGDLAYHSAVHGIEDLMSQHNCSKDGP
Sbjct: 61 TSGSHAPASDDTPEFCAALRSYALCTRRTARTCRGDLAYHSAVHGIEDLMSQHNCSKDGP 120
Query: 121 TSQPRLRTLPPAGDSQERSDSPEICHYEKSFHKHSATPNYTHCGLFGDPHLRTFTDRFQT 180
TSQPRLRTLPPAGDSQERSDSPEICHYEKSFHKHSATPNYTHCGLFGDPHLRTFTDRFQT
Sbjct: 121 TSQPRLRTLPPAGDSQERSDSPEICHYEKSFHKHSATPNYTHCGLFGDPHLRTFTDRFQT 180
Query: 181 CKVQGAWPLIDNNYLNVQATNTPVLPGSAATATSKLTIIFKNFQECVDQKVYQAEMDELP 240
CKVQGAWPLIDNNYLNVQATNTPVLPGSAATATSKLTIIFKNFQECVDQKVYQAEMDELP
Sbjct: 181 CKVQGAWPLIDNNYLNVQATNTPVLPGSAATATSKLTIIFKNFQECVDQKVYQAEMDELP 240
Query: 241 AAFVDGSKNGGDKHGANSLKITEKVSGQHVEIQAKYIGTTIVVRQVGRYLTFAVRMPEEV 300
AAFVDGSKNGGDKHGANSLKITEKVSGQHVEIQAKYIGTTIVVRQVGRYLTFAVRMPEEV
Sbjct: 241 AAFVDGSKNGGDKHGANSLKITEKVSGQHVEIQAKYIGTTIVVRQVGRYLTFAVRMPEEV 300
Query: 301 VNAVEDWDSQGLYLCLRGCPLNQQIDFQAFHTNAEGTGARRLAAASPAPTAPETFPYETA 360
VNAVEDWDSQGLYLCLRGCPLNQQIDFQAFHTNAEGTGARRLAAASPAPTAPETFPYETA
Sbjct: 301 VNAVEDWDSQGLYLCLRGCPLNQQIDFQAFHTNAEGTGARRLAAASPAPTAPETFPYETA 360
Query: 361 VAKCKEKLPVEDLYYQACVFDLLTTGDVNFTLAAYYALEDVKMLHSNKDKLHLYERTRDL 420
VAKCKEKLPVEDLYYQACVFDLLTTGDVNFTLAAYYALEDVKMLHSNKDKLHLYERTRDL
Sbjct: 361 VAKCKEKLPVEDLYYQACVFDLLTTGDVNFTLAAYYALEDVKMLHSNKDKLHLYERTRDL 420
Query: 421 PGRAAAGLPLAPRPLLGALVPLLALLPVFC 450
PGRAAAGLPLAPRPLLGALVPLLALLPVFC
Sbjct: 421 PGRAAAGLPLAPRPLLGALVPLLALLPVFC 450
>gi|224589135 RGM domain family, member B [Homo sapiens]
Length = 478
Score = 399 bits (1024), Expect = e-111
Identities = 208/406 (51%), Positives = 272/406 (66%), Gaps = 41/406 (10%)
Query: 39 CSFPAATSPCKILKCNSEFWSATSGSHAPASDDTPEFCAALRSYALCTRRTARTCRGDLA 98
C PA C+I KC ++F S TS ++ EFC ALR+YA CT+RT++ CRG+L
Sbjct: 89 CQQPAQ---CRIQKCTTDFVSLTSHLNSAVDGFDSEFCKALRAYAGCTQRTSKACRGNLV 145
Query: 99 YHSAVHGIEDLMSQHNCSKDGPTSQPRLRTLPPAGDSQERSDSPEICHYEKSFHKHSAT- 157
YHSAV GI DLMSQ NCSKDGPTS S +PE+ H ++H H+
Sbjct: 146 YHSAVLGISDLMSQRNCSKDGPTS----------------STNPEVTHDPCNYHSHAGAR 189
Query: 158 ---------PNYTHCGLFGDPHLRTFTDRFQTCKVQGAWPLIDNNYLNVQATNTPVLPGS 208
P+Y CGLFGDPHLRTF D FQTCKV+GAWPLIDNNYL+VQ TN PV+PGS
Sbjct: 190 EHRRGDQNPPSYLFCGLFGDPHLRTFKDNFQTCKVEGAWPLIDNNYLSVQVTNVPVVPGS 249
Query: 209 AATATSKLTIIFKNFQECVDQKVYQAEMDELPAAFVDGSKNGGDKHGANSLKITEKVSGQ 268
+ATAT+K+TIIFK EC DQKVYQA D+LPAAFVDG+ +GGD A SL+I E+ SG
Sbjct: 250 SATATNKITIIFKAHHECTDQKVYQAVTDDLPAAFVDGTTSGGDS-DAKSLRIVERESGH 308
Query: 269 HVEIQAKYIGTTIVVRQVGRYLTFAVRMPEEVVNAVEDWDSQGLYLCLRGCPLNQQIDFQ 328
+VE+ A+YIGTT+ VRQVGRYLT A+RMPE++ + E +SQ L LC+ GCPL+++ID
Sbjct: 309 YVEMHARYIGTTVFVRQVGRYLTLAIRMPEDLAMSYE--ESQDLQLCVNGCPLSERID-- 364
Query: 329 AFHTNAEGTGARRLAAASPAPTAPETFP---YETAVAKCKEKLPVEDLYYQACVFDLLTT 385
+ +G + L + P + + +P ETA +C EK+PV+D+Y+Q+CVFDLLTT
Sbjct: 365 ----DGQGQVSAILGHSLPRTSLVQAWPGYTLETANTQCHEKMPVKDIYFQSCVFDLLTT 420
Query: 386 GDVNFTLAAYYALEDVKMLHSNKDKLHLYERTRDLPGRAAAGLPLA 431
GD NFT AA+ ALEDV+ LH K++ H++ + + R + L ++
Sbjct: 421 GDANFTAAAHSALEDVEALHPRKERWHIFPSSGNGTPRGGSDLSVS 466
>gi|47458048 hemojuvelin isoform a precursor [Homo sapiens]
Length = 426
Score = 366 bits (939), Expect = e-101
Identities = 208/432 (48%), Positives = 261/432 (60%), Gaps = 52/432 (12%)
Query: 33 TLAFLLCSFPAATSPCKILKCNSEFWSAT---------------SGSHAPASDDTPEFCA 77
TL LLC A S CKIL+CN+E+ S+T G + C
Sbjct: 24 TLLLLLCGH--AHSQCKILRCNAEYVSSTLSLRGGGSSGALRGGGGGGRGGGVGSGGLCR 81
Query: 78 ALRSYALCTRRTARTCRGDLAYHSAVHGIEDLMSQHNCSKDGPTSQPRLR--TLPPAGDS 135
ALRSYALCTRRTARTCRGDLA+HSAVHGIEDLM QHNCS+ GPT+ P R LP AG
Sbjct: 82 ALRSYALCTRRTARTCRGDLAFHSAVHGIEDLMIQHNCSRQGPTAPPPPRGPALPGAGSG 141
Query: 136 QERSDSPEICHYEKSFHK-HSATPNYTHCGLFGDPHLRTFTDRFQTCKVQGAWPLIDNNY 194
+P+ C YE F + H P + HC FGDPH+R+F F TC+VQGAWPL+DN++
Sbjct: 142 ---LPAPDPCDYEGRFSRLHGRPPGFLHCASFGDPHVRSFHHHFHTCRVQGAWPLLDNDF 198
Query: 195 LNVQATNTPVLPGSAATATSKLTIIFKNFQECVDQKVYQAEMDELPAAFVDGSKNGGDKH 254
L VQAT++P+ G+ ATAT KLTIIFKN QEC+DQKVYQAE+D LP AF DGS NGGD+
Sbjct: 199 LFVQATSSPMALGANATATRKLTIIFKNMQECIDQKVYQAEVDNLPVAFEDGSINGGDRP 258
Query: 255 GANSLKITEKVSGQHVEIQAKYIGTTIVVRQVGRYLTFAVRMPEEVVNAVEDWDSQGLYL 314
G +SL I G HVEIQA YIGTTI++RQ L+F++++ E+V A Q L L
Sbjct: 259 GGSSLSIQTANPGNHVEIQAAYIGTTIIIRQTAGQLSFSIKVAEDVAMAFS--AEQDLQL 316
Query: 315 CLRGCPLNQQIDFQAFHTNAEGTGARRLAAASPAPTAPETFPYETAVAKCKEKLPVEDLY 374
C+ GCP +Q++ N G +TA CKE LPVED Y
Sbjct: 317 CVGGCPPSQRL--SRSERNRRG-----------------AITIDTARRLCKEGLPVEDAY 357
Query: 375 YQACVFDLLTTGDVNFTLAAYYALEDVKMLHSNKDKLHLYERTRDLPGRAAAGLPLAPRP 434
+ +CVFD+L +GD NFT+AA ALED + + +KLHL+ + AG+PL+
Sbjct: 358 FHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFP--------SDAGVPLSSAT 409
Query: 435 LLGALVPLLALL 446
LL L+ L +L
Sbjct: 410 LLAPLLSGLFVL 421
>gi|44662823 hemojuvelin isoform b [Homo sapiens]
Length = 313
Score = 284 bits (727), Expect = 1e-76
Identities = 159/340 (46%), Positives = 206/340 (60%), Gaps = 35/340 (10%)
Query: 110 MSQHNCSKDGPTSQPRLR--TLPPAGDSQERSDSPEICHYEKSFHK-HSATPNYTHCGLF 166
M QHNCS+ GPT+ P R LP AG +P+ C YE F + H P + HC F
Sbjct: 1 MIQHNCSRQGPTAPPPPRGPALPGAGSGLP---APDPCDYEGRFSRLHGRPPGFLHCASF 57
Query: 167 GDPHLRTFTDRFQTCKVQGAWPLIDNNYLNVQATNTPVLPGSAATATSKLTIIFKNFQEC 226
GDPH+R+F F TC+VQGAWPL+DN++L VQAT++P+ G+ ATAT KLTIIFKN QEC
Sbjct: 58 GDPHVRSFHHHFHTCRVQGAWPLLDNDFLFVQATSSPMALGANATATRKLTIIFKNMQEC 117
Query: 227 VDQKVYQAEMDELPAAFVDGSKNGGDKHGANSLKITEKVSGQHVEIQAKYIGTTIVVRQV 286
+DQKVYQAE+D LP AF DGS NGGD+ G +SL I G HVEIQA YIGTTI++RQ
Sbjct: 118 IDQKVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIIIRQT 177
Query: 287 GRYLTFAVRMPEEVVNAVEDWDSQGLYLCLRGCPLNQQIDFQAFHTNAEGTGARRLAAAS 346
L+F++++ E+V A Q L LC+ GCP +Q++ N G
Sbjct: 178 AGQLSFSIKVAEDVAMAFS--AEQDLQLCVGGCPPSQRL--SRSERNRRG---------- 223
Query: 347 PAPTAPETFPYETAVAKCKEKLPVEDLYYQACVFDLLTTGDVNFTLAAYYALEDVKMLHS 406
+TA CKE LPVED Y+ +CVFD+L +GD NFT+AA ALED +
Sbjct: 224 -------AITIDTARRLCKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLP 276
Query: 407 NKDKLHLYERTRDLPGRAAAGLPLAPRPLLGALVPLLALL 446
+ +KLHL+ + AG+PL+ LL L+ L +L
Sbjct: 277 DLEKLHLFP--------SDAGVPLSSATLLAPLLSGLFVL 308
>gi|42544157 hemojuvelin isoform c [Homo sapiens]
Length = 200
Score = 165 bits (417), Expect = 9e-41
Identities = 97/223 (43%), Positives = 128/223 (57%), Gaps = 29/223 (13%)
Query: 224 QECVDQKVYQAEMDELPAAFVDGSKNGGDKHGANSLKITEKVSGQHVEIQAKYIGTTIVV 283
QEC+DQKVYQAE+D LP AF DGS NGGD+ G +SL I G HVEIQA YIGTTI++
Sbjct: 2 QECIDQKVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIII 61
Query: 284 RQVGRYLTFAVRMPEEVVNAVEDWDSQGLYLCLRGCPLNQQIDFQAFHTNAEGTGARRLA 343
RQ L+F++++ E+V A Q L LC+ GCP +Q++ N G
Sbjct: 62 RQTAGQLSFSIKVAEDVAMAFS--AEQDLQLCVGGCPPSQRL--SRSERNRRG------- 110
Query: 344 AASPAPTAPETFPYETAVAKCKEKLPVEDLYYQACVFDLLTTGDVNFTLAAYYALEDVKM 403
+TA CKE LPVED Y+ +CVFD+L +GD NFT+AA ALED +
Sbjct: 111 ----------AITIDTARRLCKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARA 160
Query: 404 LHSNKDKLHLYERTRDLPGRAAAGLPLAPRPLLGALVPLLALL 446
+ +KLHL+ + AG+PL+ LL L+ L +L
Sbjct: 161 FLPDLEKLHLFP--------SDAGVPLSSATLLAPLLSGLFVL 195
>gi|47458050 hemojuvelin isoform c [Homo sapiens]
Length = 200
Score = 165 bits (417), Expect = 9e-41
Identities = 97/223 (43%), Positives = 128/223 (57%), Gaps = 29/223 (13%)
Query: 224 QECVDQKVYQAEMDELPAAFVDGSKNGGDKHGANSLKITEKVSGQHVEIQAKYIGTTIVV 283
QEC+DQKVYQAE+D LP AF DGS NGGD+ G +SL I G HVEIQA YIGTTI++
Sbjct: 2 QECIDQKVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIII 61
Query: 284 RQVGRYLTFAVRMPEEVVNAVEDWDSQGLYLCLRGCPLNQQIDFQAFHTNAEGTGARRLA 343
RQ L+F++++ E+V A Q L LC+ GCP +Q++ N G
Sbjct: 62 RQTAGQLSFSIKVAEDVAMAFS--AEQDLQLCVGGCPPSQRL--SRSERNRRG------- 110
Query: 344 AASPAPTAPETFPYETAVAKCKEKLPVEDLYYQACVFDLLTTGDVNFTLAAYYALEDVKM 403
+TA CKE LPVED Y+ +CVFD+L +GD NFT+AA ALED +
Sbjct: 111 ----------AITIDTARRLCKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARA 160
Query: 404 LHSNKDKLHLYERTRDLPGRAAAGLPLAPRPLLGALVPLLALL 446
+ +KLHL+ + AG+PL+ LL L+ L +L
Sbjct: 161 FLPDLEKLHLFP--------SDAGVPLSSATLLAPLLSGLFVL 195
>gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo
sapiens]
Length = 351
Score = 30.4 bits (67), Expect = 3.4
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 14/106 (13%)
Query: 328 QAFHTNAEGTGARRLAAASPAPTAPETFPYETAVAKCKEKLPVEDLYYQACVFDLLTTGD 387
QA H EG +++ A P AP TFP + V +E ++ F LL D
Sbjct: 73 QAGHGQGEGMRSQQSAVLRGYPEAPVTFPAQFDVPLIEENQLSFAAAARSLPFHLLQLVD 132
Query: 388 VNFTLAAYYALEDVKMLHSNKDKLHLYERTRDLPGRAAAGLPLAPR 433
LAA + LH++ ++ +LP A G+PL PR
Sbjct: 133 ----LAAASVI-----LHND-----AHQELLELPFGQAGGIPLYPR 164
>gi|153791350 replication initiator 1 isoform 1 [Homo sapiens]
Length = 567
Score = 30.4 bits (67), Expect = 3.4
Identities = 33/122 (27%), Positives = 43/122 (35%), Gaps = 16/122 (13%)
Query: 24 GRSALGFWPTLAFLLCSFPAATSPCKILKCNSEFW------SATSGSHAPASDDTPEFCA 77
G+S G W L L + AA P KC FW + H PA + P C
Sbjct: 122 GQSFRG-WVALVLHLRAHSAAKRPIACPKCERRFWRRKQLRAHLRRCHPPAPEARPFICG 180
Query: 78 ALRSYALCTRRTARTCRGDLAYHSAVHGIEDL-MSQHNCSKDGPTSQPRLRTLPPAGDSQ 136
C R A+ L H VH E L + P +P + P GD+
Sbjct: 181 N------CGRSFAQW--DQLVAHKRVHVAEALEEAAAKALGPRPRGRPAVTAPRPGGDAV 232
Query: 137 ER 138
+R
Sbjct: 233 DR 234
>gi|153792539 replication initiator 1 isoform 1 [Homo sapiens]
Length = 567
Score = 30.4 bits (67), Expect = 3.4
Identities = 33/122 (27%), Positives = 43/122 (35%), Gaps = 16/122 (13%)
Query: 24 GRSALGFWPTLAFLLCSFPAATSPCKILKCNSEFW------SATSGSHAPASDDTPEFCA 77
G+S G W L L + AA P KC FW + H PA + P C
Sbjct: 122 GQSFRG-WVALVLHLRAHSAAKRPIACPKCERRFWRRKQLRAHLRRCHPPAPEARPFICG 180
Query: 78 ALRSYALCTRRTARTCRGDLAYHSAVHGIEDL-MSQHNCSKDGPTSQPRLRTLPPAGDSQ 136
C R A+ L H VH E L + P +P + P GD+
Sbjct: 181 N------CGRSFAQW--DQLVAHKRVHVAEALEEAAAKALGPRPRGRPAVTAPRPGGDAV 232
Query: 137 ER 138
+R
Sbjct: 233 DR 234
>gi|153792647 replication initiator 1 isoform 3 [Homo sapiens]
Length = 624
Score = 30.4 bits (67), Expect = 3.4
Identities = 33/122 (27%), Positives = 43/122 (35%), Gaps = 16/122 (13%)
Query: 24 GRSALGFWPTLAFLLCSFPAATSPCKILKCNSEFW------SATSGSHAPASDDTPEFCA 77
G+S G W L L + AA P KC FW + H PA + P C
Sbjct: 179 GQSFRG-WVALVLHLRAHSAAKRPIACPKCERRFWRRKQLRAHLRRCHPPAPEARPFICG 237
Query: 78 ALRSYALCTRRTARTCRGDLAYHSAVHGIEDL-MSQHNCSKDGPTSQPRLRTLPPAGDSQ 136
C R A+ L H VH E L + P +P + P GD+
Sbjct: 238 N------CGRSFAQW--DQLVAHKRVHVAEALEEAAAKALGPRPRGRPAVTAPRPGGDAV 289
Query: 137 ER 138
+R
Sbjct: 290 DR 291
>gi|153791994 replication initiator 1 isoform 1 [Homo sapiens]
Length = 567
Score = 30.4 bits (67), Expect = 3.4
Identities = 33/122 (27%), Positives = 43/122 (35%), Gaps = 16/122 (13%)
Query: 24 GRSALGFWPTLAFLLCSFPAATSPCKILKCNSEFW------SATSGSHAPASDDTPEFCA 77
G+S G W L L + AA P KC FW + H PA + P C
Sbjct: 122 GQSFRG-WVALVLHLRAHSAAKRPIACPKCERRFWRRKQLRAHLRRCHPPAPEARPFICG 180
Query: 78 ALRSYALCTRRTARTCRGDLAYHSAVHGIEDL-MSQHNCSKDGPTSQPRLRTLPPAGDSQ 136
C R A+ L H VH E L + P +P + P GD+
Sbjct: 181 N------CGRSFAQW--DQLVAHKRVHVAEALEEAAAKALGPRPRGRPAVTAPRPGGDAV 232
Query: 137 ER 138
+R
Sbjct: 233 DR 234
>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
Length = 1030
Score = 30.4 bits (67), Expect = 3.4
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 8/37 (21%)
Query: 114 NCSKDGPTSQPRLRTLP--------PAGDSQERSDSP 142
+C DGPTSQP L T P P GD + S P
Sbjct: 118 SCLPDGPTSQPHLATTPTDSSCSSGPTGDGVQGSPLP 154
>gi|134268640 tectorin alpha precursor [Homo sapiens]
Length = 2155
Score = 30.0 bits (66), Expect = 4.5
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 136 QERSDSP-EICHYEKSFHKHSATPNYTHCGLFGDPHLRTF 174
QE S SP E+C + F SA T C +FG+PH TF
Sbjct: 295 QEASCSPYEVCEPKGKFFYCSAVETST-CVVFGEPHYHTF 333
>gi|145386551 SH3 domain and tetratricopeptide repeats 1 [Homo
sapiens]
Length = 1336
Score = 29.6 bits (65), Expect = 5.8
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 372 DLYYQACVFDLLTTGDVNFTLAAYYALEDVKMLHS-NKDKLHLYERTRDLPGRAAAGLPL 430
DLY Q L TGD N L + A D+ + ++K + R R LP G
Sbjct: 1090 DLYIQVAQNVALYTGDPNLGLELFEAAGDIFFDGAWEREKAVSFYRDRALPLAVTTGNRK 1149
Query: 431 APRPLLGALVPLLALL 446
A L LV LLA L
Sbjct: 1150 AELRLCNKLVALLATL 1165
>gi|239754305 PREDICTED: hypothetical protein XP_002345935 [Homo
sapiens]
Length = 156
Score = 29.3 bits (64), Expect = 7.6
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 317 RGCPLNQQIDFQAFHTNAEGTGA----RRLAAASPAPTAPETFPYETAVA 362
RG + +++DF H N + GA R AA + A P+ P AVA
Sbjct: 65 RGAQVGKRVDFGQEHPNLQDVGAGTVPRGAAAGAGAGAVPKAMPGAVAVA 114
>gi|239748844 PREDICTED: hypothetical protein XP_002346836 [Homo
sapiens]
Length = 156
Score = 29.3 bits (64), Expect = 7.6
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 317 RGCPLNQQIDFQAFHTNAEGTGA----RRLAAASPAPTAPETFPYETAVA 362
RG + +++DF H N + GA R AA + A P+ P AVA
Sbjct: 65 RGAQVGKRVDFGQEHPNLQDVGAGTVPRGAAAGAGAGAVPKAMPGAVAVA 114
>gi|239742871 PREDICTED: hypothetical protein XP_002342668 [Homo
sapiens]
Length = 156
Score = 29.3 bits (64), Expect = 7.6
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 317 RGCPLNQQIDFQAFHTNAEGTGA----RRLAAASPAPTAPETFPYETAVA 362
RG + +++DF H N + GA R AA + A P+ P AVA
Sbjct: 65 RGAQVGKRVDFGQEHPNLQDVGAGTVPRGAAAGAGAGAVPKAMPGAVAVA 114
>gi|27477095 nuclear receptor binding SET domain protein 1 isoform a
[Homo sapiens]
Length = 2427
Score = 29.3 bits (64), Expect = 7.6
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 394 AYYALEDVKMLHSNKDKLHLYERTRDLPGRAAAGLPLAPRPL 435
A +L ++L K LYE T GRA+AG P PL
Sbjct: 2260 AVKSLTQARLLSQPPAKAFLYEPTTQASGRASAGAEQTPGPL 2301
>gi|19923586 nuclear receptor binding SET domain protein 1 isoform b
[Homo sapiens]
Length = 2696
Score = 29.3 bits (64), Expect = 7.6
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 394 AYYALEDVKMLHSNKDKLHLYERTRDLPGRAAAGLPLAPRPL 435
A +L ++L K LYE T GRA+AG P PL
Sbjct: 2529 AVKSLTQARLLSQPPAKAFLYEPTTQASGRASAGAEQTPGPL 2570
>gi|11560152 zinc finger protein 335 [Homo sapiens]
Length = 1342
Score = 28.9 bits (63), Expect = 9.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 106 IEDLMSQHNCSKDGPTSQPRLRTLPPAGDSQERSDSPEI 144
IE+L QH+ + P S P +PP + + S++P +
Sbjct: 729 IEELKQQHSAAPGPPPSSPGPPEIPPEATTFQSSEAPSL 767
>gi|194097489 RAN binding protein 3 isoform RANBP3-b [Homo sapiens]
Length = 499
Score = 28.9 bits (63), Expect = 9.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 54 NSEFWSATSGSHAPASDDTPEFCAALRSYALCTRRTARTC 93
N E +A SGS + + + TPE + S A T+ TAR C
Sbjct: 277 NRENAAAESGSESSSQEATPEKESLAESAAAYTKATARKC 316
>gi|194097487 RAN binding protein 3 isoform RANBP3-a [Homo sapiens]
Length = 562
Score = 28.9 bits (63), Expect = 9.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 54 NSEFWSATSGSHAPASDDTPEFCAALRSYALCTRRTARTC 93
N E +A SGS + + + TPE + S A T+ TAR C
Sbjct: 340 NRENAAAESGSESSSQEATPEKESLAESAAAYTKATARKC 379
>gi|6466466 RAN binding protein 3 isoform RANBP3-d [Homo sapiens]
Length = 567
Score = 28.9 bits (63), Expect = 9.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 54 NSEFWSATSGSHAPASDDTPEFCAALRSYALCTRRTARTC 93
N E +A SGS + + + TPE + S A T+ TAR C
Sbjct: 345 NRENAAAESGSESSSQEATPEKESLAESAAAYTKATARKC 384
>gi|7662160 hypothetical protein LOC9813 [Homo sapiens]
Length = 495
Score = 28.9 bits (63), Expect = 9.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 111 SQHNCSKDGPTSQPRLRTLPPAGDSQERSDSPE 143
S+ K GP+S LRT PP DS+ S+ E
Sbjct: 17 SRRKKPKKGPSSHRLLRTEPPDSDSESSSEEEE 49
>gi|112789555 ADAM metallopeptidase with thrombospondin type 1 motif,
19 preproprotein [Homo sapiens]
Length = 1207
Score = 28.9 bits (63), Expect = 9.9
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 42 PAATSPCKILKCNSEFWSATSGSHAPAS-------DDTPEFCAALRSYALCT-----RRT 89
PAA PC + CN + T S A+ D P +C +R LC +R
Sbjct: 1132 PAAYRPCHLQPCNEKINVNTITSPRLAALTFKCLGDQWPVYCRVIREKNLCQDMRWYQRC 1191
Query: 90 ARTCR 94
TCR
Sbjct: 1192 CETCR 1196
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,088,898
Number of Sequences: 37866
Number of extensions: 906694
Number of successful extensions: 2460
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2426
Number of HSP's gapped (non-prelim): 31
length of query: 450
length of database: 18,247,518
effective HSP length: 106
effective length of query: 344
effective length of database: 14,233,722
effective search space: 4896400368
effective search space used: 4896400368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.