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Search of human proteins with 24308039
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24308039 hypothetical protein LOC23376 [Homo sapiens]
(794 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24308039 hypothetical protein LOC23376 [Homo sapiens] 1534 0.0
gi|34878777 ring finger protein 20 [Homo sapiens] 45 3e-04
gi|46852388 cell-cycle and apoptosis regulatory protein 1 [Homo ... 40 0.006
gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo ... 39 0.025
gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo s... 39 0.025
gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sa... 39 0.025
gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1... 38 0.032
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 37 0.072
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 37 0.072
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 37 0.072
gi|32528306 replication factor C large subunit [Homo sapiens] 37 0.094
gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens] 37 0.094
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 36 0.12
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 36 0.12
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 36 0.12
gi|48255931 hepatoma-derived growth factor-related protein 2 iso... 36 0.12
gi|14249158 hepatoma-derived growth factor-related protein 2 iso... 36 0.12
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 35 0.21
gi|6631095 minichromosome maintenance complex component 3 [Homo ... 35 0.21
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 35 0.27
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 35 0.27
gi|224591430 Ly1 antibody reactive homolog [Homo sapiens] 35 0.27
gi|8923398 Ly1 antibody reactive homolog [Homo sapiens] 35 0.27
gi|104526627 triadin [Homo sapiens] 35 0.27
gi|13540523 nucleosomal binding protein 1 [Homo sapiens] 35 0.36
gi|14165413 protocadherin alpha 4 isoform 2 precursor [Homo sapi... 35 0.36
gi|9256588 protocadherin alpha 4 isoform 1 precursor [Homo sapiens] 35 0.36
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 34 0.47
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 34 0.47
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 34 0.47
>gi|24308039 hypothetical protein LOC23376 [Homo sapiens]
Length = 794
Score = 1534 bits (3972), Expect = 0.0
Identities = 794/794 (100%), Positives = 794/794 (100%)
Query: 1 MADAWEEIRRLAADFQRAQFAEATQRLSERNCIEIVNKLIAQKQLEVVHTLDGKEYITPA 60
MADAWEEIRRLAADFQRAQFAEATQRLSERNCIEIVNKLIAQKQLEVVHTLDGKEYITPA
Sbjct: 1 MADAWEEIRRLAADFQRAQFAEATQRLSERNCIEIVNKLIAQKQLEVVHTLDGKEYITPA 60
Query: 61 QISKEMRDELHVRGGRVNIVDLQQVINVDLIHIENRIGDIIKSEKHVQLVLGQLIDENYL 120
QISKEMRDELHVRGGRVNIVDLQQVINVDLIHIENRIGDIIKSEKHVQLVLGQLIDENYL
Sbjct: 61 QISKEMRDELHVRGGRVNIVDLQQVINVDLIHIENRIGDIIKSEKHVQLVLGQLIDENYL 120
Query: 121 DRLAEEVNDKLQESGQVTISELCKTYDLPGNFLTQALTQRLGRIISGHIDLDNRGVIFTE 180
DRLAEEVNDKLQESGQVTISELCKTYDLPGNFLTQALTQRLGRIISGHIDLDNRGVIFTE
Sbjct: 121 DRLAEEVNDKLQESGQVTISELCKTYDLPGNFLTQALTQRLGRIISGHIDLDNRGVIFTE 180
Query: 181 AFVARHKARIRGLFSAITRPTAVNSLISKYGFQEQLLYSVLEELVNSGRLRGTVVGGRQD 240
AFVARHKARIRGLFSAITRPTAVNSLISKYGFQEQLLYSVLEELVNSGRLRGTVVGGRQD
Sbjct: 181 AFVARHKARIRGLFSAITRPTAVNSLISKYGFQEQLLYSVLEELVNSGRLRGTVVGGRQD 240
Query: 241 KAVFVPDIYSRTQSTWVDSFFRQNGYLEFDALSRLGIPDAVSYIKKRYKTTQLLFLKAAC 300
KAVFVPDIYSRTQSTWVDSFFRQNGYLEFDALSRLGIPDAVSYIKKRYKTTQLLFLKAAC
Sbjct: 241 KAVFVPDIYSRTQSTWVDSFFRQNGYLEFDALSRLGIPDAVSYIKKRYKTTQLLFLKAAC 300
Query: 301 VGQGLVDQVEASVEEAISSGTWVDIAPLLPTSLSVEDAAILLQQVMRAFSKQASTVVFSD 360
VGQGLVDQVEASVEEAISSGTWVDIAPLLPTSLSVEDAAILLQQVMRAFSKQASTVVFSD
Sbjct: 301 VGQGLVDQVEASVEEAISSGTWVDIAPLLPTSLSVEDAAILLQQVMRAFSKQASTVVFSD 360
Query: 361 TVVVSEKFINDCTELFRELMHQKAEKEMKNNPVHLITEEDLKQISTLESVSTSKKDKKDE 420
TVVVSEKFINDCTELFRELMHQKAEKEMKNNPVHLITEEDLKQISTLESVSTSKKDKKDE
Sbjct: 361 TVVVSEKFINDCTELFRELMHQKAEKEMKNNPVHLITEEDLKQISTLESVSTSKKDKKDE 420
Query: 421 RRRKATEGSGSMRGGGGGNAREYKIKKVKKKGRKDDDSDDESQSSHTGKKKPEISFMFQD 480
RRRKATEGSGSMRGGGGGNAREYKIKKVKKKGRKDDDSDDESQSSHTGKKKPEISFMFQD
Sbjct: 421 RRRKATEGSGSMRGGGGGNAREYKIKKVKKKGRKDDDSDDESQSSHTGKKKPEISFMFQD 480
Query: 481 EIEDFLRKHIQDAPEEFISELAEYLIKPLNKTYLEVVRSVFMSSTTSASGTGRKRTIKDL 540
EIEDFLRKHIQDAPEEFISELAEYLIKPLNKTYLEVVRSVFMSSTTSASGTGRKRTIKDL
Sbjct: 481 EIEDFLRKHIQDAPEEFISELAEYLIKPLNKTYLEVVRSVFMSSTTSASGTGRKRTIKDL 540
Query: 541 QEEVSNLYNNIRLFEKGMKFFADDTQAALTKHLLKSVCTDITNLIFNFLASDLMMAVDDP 600
QEEVSNLYNNIRLFEKGMKFFADDTQAALTKHLLKSVCTDITNLIFNFLASDLMMAVDDP
Sbjct: 541 QEEVSNLYNNIRLFEKGMKFFADDTQAALTKHLLKSVCTDITNLIFNFLASDLMMAVDDP 600
Query: 601 AAITSEIRKKILSKLSEETKVALTKLHNSLNEKSIEDFISCLDSAAEACDIMVKRGDKKR 660
AAITSEIRKKILSKLSEETKVALTKLHNSLNEKSIEDFISCLDSAAEACDIMVKRGDKKR
Sbjct: 601 AAITSEIRKKILSKLSEETKVALTKLHNSLNEKSIEDFISCLDSAAEACDIMVKRGDKKR 660
Query: 661 ERQILFQHRQALAEQLKVTEDPALILHLTSVLLFQFSTHSMLHAPGRCVPQIIAFLNSKI 720
ERQILFQHRQALAEQLKVTEDPALILHLTSVLLFQFSTHSMLHAPGRCVPQIIAFLNSKI
Sbjct: 661 ERQILFQHRQALAEQLKVTEDPALILHLTSVLLFQFSTHSMLHAPGRCVPQIIAFLNSKI 720
Query: 721 PEDQHALLVKYQGLVVKQLVSQSKKTGQGDYPLNNELDKEQEDVASTTRKELQELSSSIK 780
PEDQHALLVKYQGLVVKQLVSQSKKTGQGDYPLNNELDKEQEDVASTTRKELQELSSSIK
Sbjct: 721 PEDQHALLVKYQGLVVKQLVSQSKKTGQGDYPLNNELDKEQEDVASTTRKELQELSSSIK 780
Query: 781 DLVLKSRKSSVTEE 794
DLVLKSRKSSVTEE
Sbjct: 781 DLVLKSRKSSVTEE 794
>gi|34878777 ring finger protein 20 [Homo sapiens]
Length = 975
Score = 44.7 bits (104), Expect = 3e-04
Identities = 67/306 (21%), Positives = 129/306 (42%), Gaps = 45/306 (14%)
Query: 379 LMHQKAEKEMKNNPVHLITE-EDLKQISTLESVST-------SKKDKKDERRRKATEGSG 430
L Q + ++ K+ P L + EDL S+ S SK+D+++ R + +
Sbjct: 520 LQSQSSTEDPKDEPAELKPDSEDLSSQSSASKASQEDANEIKSKRDEEERERERREKERE 579
Query: 431 SMRGGGGGNAREYKIKKVKKKGRKDDDSDDESQSSHTGKKKPEISFMFQDEIEDFLRKHI 490
R RE + +K+K+ ++ D + D+ + H +K E + Q +IE K
Sbjct: 580 REREREKEKEREREKQKLKESEKERDSAKDKEKGKHDDGRKKEAEIIKQLKIE---LKKA 636
Query: 491 QDAPEEFISELAEYLIKPLNKTYLEVVRSVFMSSTTSASGTGRKRTIKDLQEEVSNLYNN 550
Q++ +E L Y P K + V+ + + A ++ +KDL+++
Sbjct: 637 QESQKEMKLLLDMYRSAP--KEQRDKVQLMAAEKKSKAELEDLRQRLKDLEDKE------ 688
Query: 551 IRLFEKGMKFFADDTQAALTKHLLKSVCTDITNLIFNFLASDLMMAVDDPAAITSEIRKK 610
+K K AD+ AL K +++V I +L L MA + A+ SE+
Sbjct: 689 ----KKENKKMADED--ALRK--IRAVEEQI-----EYLQKKLAMAKQEEEALLSEM--D 733
Query: 611 ILSKLSEETKVALTKLHNSLNEKSIEDFISCLDSAAEACDIMVKRGDKKRERQILFQHRQ 670
+ + E+ + +L L EK +F +M +R + ++L + ++
Sbjct: 734 VTGQAFEDMQEQNIRLMQQLREKDDANF-----------KLMSERIKSNQIHKLLKEEKE 782
Query: 671 ALAEQL 676
LA+Q+
Sbjct: 783 ELADQV 788
>gi|46852388 cell-cycle and apoptosis regulatory protein 1 [Homo
sapiens]
Length = 1150
Score = 40.4 bits (93), Expect = 0.006
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 374 ELFRELMHQKAEKEMKNNPVHLITEEDLKQISTLESVSTSKKDKKDERRRKATEGSGSMR 433
ELF E++ + + + + L +ED K+ +S +KDKK+ER + E R
Sbjct: 772 ELFNEMLQRDFGVRIYKSLLSLPEKEDKKE-KDKKSKKDERKDKKEERDDETDEPKPKRR 830
Query: 434 GGGGGNAREYKIKKVKKKGRKDDDSDDESQSSHTGKKKPEISFMFQDEIED 484
G ++ + KK+ ++ DDS D+ ++ + E M +E ED
Sbjct: 831 KSGDDKDKKEDRDERKKEDKRKDDSKDDDETEE-DNNQDEYDPMEAEEAED 880
>gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo
sapiens]
Length = 1188
Score = 38.5 bits (88), Expect = 0.025
Identities = 57/267 (21%), Positives = 94/267 (35%), Gaps = 38/267 (14%)
Query: 402 KQISTLESVSTSKKD-KKDERRRKATEGSGSMRGGGGGNAREYKIKKVKKKGRKDDDSDD 460
KQ ++ S+KD K+DE R+K+ G ++ N K +G+ D S D
Sbjct: 640 KQKKKAKNKEDSEKDEKRDEERQKSKRGRPPLKSTLSSNMPYGLSKTANSEGKSDSCSSD 699
Query: 461 ESQSSHTGKKKPEISFMFQDEIE-------DFLRKHIQDAPEEFISELAEYLIKPLNKTY 513
K +DE+E D L + + E ++PL
Sbjct: 700 SETEDALEKNLINEELSLKDELEKNENLNDDKLDEENPKISAHILKENDRTQMQPLETLK 759
Query: 514 LEV----------------VRSVFMSSTTSASGTGRKRTIKDLQEEVSNLYNNIRLFEKG 557
LEV V + S G GR+ KDL E+ I++ G
Sbjct: 760 LEVGENEQIVQIFGNKMEKTEEVKKEAEKSPKGKGRRSKTKDLSLEI------IKISSFG 813
Query: 558 MKFFADDTQAALTKHLLKSVCTDITNLIFNFLASDLMMAVDDPAAITSEIRKKILSKLSE 617
++ + H L+ + + N F+ D + D ++++KIL + S
Sbjct: 814 QN--EAGSEPHIEAHSLE--LSSLDNKNFSSATEDEI----DQCVKEKKLKRKILGQSSP 865
Query: 618 ETKVALTKLHNSLNEKSIEDFISCLDS 644
E K+ + N S E C+ S
Sbjct: 866 EKKIRIENGMEMTNTVSQERTSDCIGS 892
Score = 30.8 bits (68), Expect = 5.1
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 21/99 (21%)
Query: 367 KFINDCTELFRELMHQKAEKEMKNNPVHLITEEDLKQISTLESVSTSKKDKKDERRRKAT 426
+ D + +E+ +K E ++K+N T KD D+
Sbjct: 472 RIARDVNSIKKEIEEEKTEDKLKDN-------------------DTENKDVDDDYETAEK 512
Query: 427 EGSGSMRGGGGGNAREYKIKKVKKKGRKDDDSDDESQSS 465
+ + + G N + K KK+KK+ D DSD+E + S
Sbjct: 513 KENELLLGRK--NTPKQKEKKIKKQEDSDKDSDEEEEKS 549
>gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo
sapiens]
Length = 1203
Score = 38.5 bits (88), Expect = 0.025
Identities = 57/267 (21%), Positives = 94/267 (35%), Gaps = 38/267 (14%)
Query: 402 KQISTLESVSTSKKD-KKDERRRKATEGSGSMRGGGGGNAREYKIKKVKKKGRKDDDSDD 460
KQ ++ S+KD K+DE R+K+ G ++ N K +G+ D S D
Sbjct: 640 KQKKKAKNKEDSEKDEKRDEERQKSKRGRPPLKSTLSSNMPYGLSKTANSEGKSDSCSSD 699
Query: 461 ESQSSHTGKKKPEISFMFQDEIE-------DFLRKHIQDAPEEFISELAEYLIKPLNKTY 513
K +DE+E D L + + E ++PL
Sbjct: 700 SETEDALEKNLINEELSLKDELEKNENLNDDKLDEENPKISAHILKENDRTQMQPLETLK 759
Query: 514 LEV----------------VRSVFMSSTTSASGTGRKRTIKDLQEEVSNLYNNIRLFEKG 557
LEV V + S G GR+ KDL E+ I++ G
Sbjct: 760 LEVGENEQIVQIFGNKMEKTEEVKKEAEKSPKGKGRRSKTKDLSLEI------IKISSFG 813
Query: 558 MKFFADDTQAALTKHLLKSVCTDITNLIFNFLASDLMMAVDDPAAITSEIRKKILSKLSE 617
++ + H L+ + + N F+ D + D ++++KIL + S
Sbjct: 814 QN--EAGSEPHIEAHSLE--LSSLDNKNFSSATEDEI----DQCVKEKKLKRKILGQSSP 865
Query: 618 ETKVALTKLHNSLNEKSIEDFISCLDS 644
E K+ + N S E C+ S
Sbjct: 866 EKKIRIENGMEMTNTVSQERTSDCIGS 892
Score = 30.8 bits (68), Expect = 5.1
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 21/99 (21%)
Query: 367 KFINDCTELFRELMHQKAEKEMKNNPVHLITEEDLKQISTLESVSTSKKDKKDERRRKAT 426
+ D + +E+ +K E ++K+N T KD D+
Sbjct: 472 RIARDVNSIKKEIEEEKTEDKLKDN-------------------DTENKDVDDDYETAEK 512
Query: 427 EGSGSMRGGGGGNAREYKIKKVKKKGRKDDDSDDESQSS 465
+ + + G N + K KK+KK+ D DSD+E + S
Sbjct: 513 KENELLLGRK--NTPKQKEKKIKKQEDSDKDSDEEEEKS 549
>gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo
sapiens]
Length = 1257
Score = 38.5 bits (88), Expect = 0.025
Identities = 57/267 (21%), Positives = 94/267 (35%), Gaps = 38/267 (14%)
Query: 402 KQISTLESVSTSKKD-KKDERRRKATEGSGSMRGGGGGNAREYKIKKVKKKGRKDDDSDD 460
KQ ++ S+KD K+DE R+K+ G ++ N K +G+ D S D
Sbjct: 640 KQKKKAKNKEDSEKDEKRDEERQKSKRGRPPLKSTLSSNMPYGLSKTANSEGKSDSCSSD 699
Query: 461 ESQSSHTGKKKPEISFMFQDEIE-------DFLRKHIQDAPEEFISELAEYLIKPLNKTY 513
K +DE+E D L + + E ++PL
Sbjct: 700 SETEDALEKNLINEELSLKDELEKNENLNDDKLDEENPKISAHILKENDRTQMQPLETLK 759
Query: 514 LEV----------------VRSVFMSSTTSASGTGRKRTIKDLQEEVSNLYNNIRLFEKG 557
LEV V + S G GR+ KDL E+ I++ G
Sbjct: 760 LEVGENEQIVQIFGNKMEKTEEVKKEAEKSPKGKGRRSKTKDLSLEI------IKISSFG 813
Query: 558 MKFFADDTQAALTKHLLKSVCTDITNLIFNFLASDLMMAVDDPAAITSEIRKKILSKLSE 617
++ + H L+ + + N F+ D + D ++++KIL + S
Sbjct: 814 QN--EAGSEPHIEAHSLE--LSSLDNKNFSSATEDEI----DQCVKEKKLKRKILGQSSP 865
Query: 618 ETKVALTKLHNSLNEKSIEDFISCLDS 644
E K+ + N S E C+ S
Sbjct: 866 EKKIRIENGMEMTNTVSQERTSDCIGS 892
Score = 30.8 bits (68), Expect = 5.1
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 21/99 (21%)
Query: 367 KFINDCTELFRELMHQKAEKEMKNNPVHLITEEDLKQISTLESVSTSKKDKKDERRRKAT 426
+ D + +E+ +K E ++K+N T KD D+
Sbjct: 472 RIARDVNSIKKEIEEEKTEDKLKDN-------------------DTENKDVDDDYETAEK 512
Query: 427 EGSGSMRGGGGGNAREYKIKKVKKKGRKDDDSDDESQSS 465
+ + + G N + K KK+KK+ D DSD+E + S
Sbjct: 513 KENELLLGRK--NTPKQKEKKIKKQEDSDKDSDEEEEKS 549
>gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1
[Homo sapiens]
Length = 651
Score = 38.1 bits (87), Expect = 0.032
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Query: 370 NDCTELFRELMHQKAEKEMKNNPVHLITEEDLKQISTLESVSTSKKDKKDERRRKATEGS 429
ND L + + +K+ K +E +L+ + + KKD K + ++
Sbjct: 382 NDSRNLKKASKNDDKKKDAKKITFSTDSESELESKESQKDEKKDKKDSKTDNKKSVKNDE 441
Query: 430 GSMRGGGGGNAREYKIKKVKKKGRKDDDSDDESQSSHTGKKKPEISFMFQD 480
S K KK +KKG+KD DD+ + + KK E + M D
Sbjct: 442 ESTDADSEPKGDSKKGKKDEKKGKKDSKKDDKKKDA---KKNAESTEMESD 489
Score = 30.8 bits (68), Expect = 5.1
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 408 ESVSTSKKDKKDERRRKATEGSGSMRGGGGGNAREYK-IKKVKKKGRKDDDSDD-----E 461
+S K KKD++++ + + S G + E K KK KKK +KDD D E
Sbjct: 309 DSKKVKKNVKKDDKKKDVKKDTESTDAESGDSKDERKDTKKDKKKLKKDDKKKDTKKYPE 368
Query: 462 SQSSHTGKKK 471
S + +G K
Sbjct: 369 STDTESGDAK 378
Score = 30.4 bits (67), Expect = 6.7
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 22/111 (19%)
Query: 382 QKAEKEMKNNPVHLITEEDLKQISTLESVSTSKKDKKDERRRKATEGSGSMRGGGGGNAR 441
+K +K+ K + + ++ + E SKK KKDE++ K + NA
Sbjct: 423 KKDKKDSKTDNKKSVKNDEESTDADSEPKGDSKKGKKDEKKGKKDSKKDDKKKDAKKNAE 482
Query: 442 EYKI--------------------KKVKKKGRKDDDSDDE--SQSSHTGKK 470
++ K +KK RKD +S D +SS TG K
Sbjct: 483 STEMESDLELKKDKKHSKEKKGSKKDIKKDARKDTESTDAEFDESSKTGFK 533
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 37.0 bits (84), Expect = 0.072
Identities = 56/235 (23%), Positives = 94/235 (40%), Gaps = 36/235 (15%)
Query: 369 INDCTELFRELMHQKAEKEMKNNPVH---------LITEEDLKQIS--TLESVSTSKKDK 417
I D E+ R ++ EK H L ++ LK I TLE + + K
Sbjct: 1315 IKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQK 1374
Query: 418 KDERRRKATEGSGSMRGGGGGNAREY--KIKKVKKKGRKDDDSDDESQSSHTGKKKPEIS 475
K R+RK +GS +R+ + KK KK+GR + + + T K K
Sbjct: 1375 KSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMK---- 1430
Query: 476 FMFQDEIEDFLRKHIQDAPEEFISELAEYLIKPLNK---TYLEVVRS-VFMSSTTSASGT 531
+I D + K+ + +SE+ ++ P K Y E++R V
Sbjct: 1431 -----KIVDAVIKYKDSSSGRQLSEV--FIQLPSRKELPEYYELIRKPVDFKKIKERIRN 1483
Query: 532 GRKRTIKDLQEEVSNLYNNIRLFE-KGMKFFADDTQAALTKHLLKSVCTDITNLI 585
+ R++ DL+++V L N + F +G + D +L+SV T + I
Sbjct: 1484 HKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSI-------VLQSVFTSVRQKI 1531
Score = 34.3 bits (77), Expect = 0.47
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 335 VEDAAILLQQVMRAFSKQASTVVFSDTVVVSEKFINDCTELFRELMHQKAEKEMKNNPVH 394
+E +LL Q + F+ + S +++ D++V+ F + + QK EKE +
Sbjct: 1492 LEKDVMLLCQNAQTFNLEGS-LIYEDSIVLQSVFTS---------VRQKIEKEDDSEGEE 1541
Query: 395 LITEEDLKQISTLESVSTSKKDK-KDERRRKATEGSGSMRGGGGGNAREYKIKKVKKKGR 453
EE+ ++ + ES S S K K K R+ KA + ++GG +R + K V
Sbjct: 1542 SEEEEEGEEEGS-ESESRSVKVKIKLGRKEKAQD---RLKGGRRRPSRGSRAKPVVS--- 1594
Query: 454 KDDDSDDESQSSHTGKKKPE 473
DDDS++E + +G E
Sbjct: 1595 -DDDSEEEQEEDRSGSGSEE 1613
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 37.0 bits (84), Expect = 0.072
Identities = 56/235 (23%), Positives = 94/235 (40%), Gaps = 36/235 (15%)
Query: 369 INDCTELFRELMHQKAEKEMKNNPVH---------LITEEDLKQIS--TLESVSTSKKDK 417
I D E+ R ++ EK H L ++ LK I TLE + + K
Sbjct: 1348 IKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQK 1407
Query: 418 KDERRRKATEGSGSMRGGGGGNAREY--KIKKVKKKGRKDDDSDDESQSSHTGKKKPEIS 475
K R+RK +GS +R+ + KK KK+GR + + + T K K
Sbjct: 1408 KSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMK---- 1463
Query: 476 FMFQDEIEDFLRKHIQDAPEEFISELAEYLIKPLNK---TYLEVVRS-VFMSSTTSASGT 531
+I D + K+ + +SE+ ++ P K Y E++R V
Sbjct: 1464 -----KIVDAVIKYKDSSSGRQLSEV--FIQLPSRKELPEYYELIRKPVDFKKIKERIRN 1516
Query: 532 GRKRTIKDLQEEVSNLYNNIRLFE-KGMKFFADDTQAALTKHLLKSVCTDITNLI 585
+ R++ DL+++V L N + F +G + D +L+SV T + I
Sbjct: 1517 HKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSI-------VLQSVFTSVRQKI 1564
Score = 34.3 bits (77), Expect = 0.47
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 335 VEDAAILLQQVMRAFSKQASTVVFSDTVVVSEKFINDCTELFRELMHQKAEKEMKNNPVH 394
+E +LL Q + F+ + S +++ D++V+ F + + QK EKE +
Sbjct: 1525 LEKDVMLLCQNAQTFNLEGS-LIYEDSIVLQSVFTS---------VRQKIEKEDDSEGEE 1574
Query: 395 LITEEDLKQISTLESVSTSKKDK-KDERRRKATEGSGSMRGGGGGNAREYKIKKVKKKGR 453
EE+ ++ + ES S S K K K R+ KA + ++GG +R + K V
Sbjct: 1575 SEEEEEGEEEGS-ESESRSVKVKIKLGRKEKAQD---RLKGGRRRPSRGSRAKPVVS--- 1627
Query: 454 KDDDSDDESQSSHTGKKKPE 473
DDDS++E + +G E
Sbjct: 1628 -DDDSEEEQEEDRSGSGSEE 1646
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 37.0 bits (84), Expect = 0.072
Identities = 56/235 (23%), Positives = 94/235 (40%), Gaps = 36/235 (15%)
Query: 369 INDCTELFRELMHQKAEKEMKNNPVH---------LITEEDLKQIS--TLESVSTSKKDK 417
I D E+ R ++ EK H L ++ LK I TLE + + K
Sbjct: 1348 IKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQK 1407
Query: 418 KDERRRKATEGSGSMRGGGGGNAREY--KIKKVKKKGRKDDDSDDESQSSHTGKKKPEIS 475
K R+RK +GS +R+ + KK KK+GR + + + T K K
Sbjct: 1408 KSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMK---- 1463
Query: 476 FMFQDEIEDFLRKHIQDAPEEFISELAEYLIKPLNK---TYLEVVRS-VFMSSTTSASGT 531
+I D + K+ + +SE+ ++ P K Y E++R V
Sbjct: 1464 -----KIVDAVIKYKDSSSGRQLSEV--FIQLPSRKELPEYYELIRKPVDFKKIKERIRN 1516
Query: 532 GRKRTIKDLQEEVSNLYNNIRLFE-KGMKFFADDTQAALTKHLLKSVCTDITNLI 585
+ R++ DL+++V L N + F +G + D +L+SV T + I
Sbjct: 1517 HKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSI-------VLQSVFTSVRQKI 1564
Score = 34.3 bits (77), Expect = 0.47
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 335 VEDAAILLQQVMRAFSKQASTVVFSDTVVVSEKFINDCTELFRELMHQKAEKEMKNNPVH 394
+E +LL Q + F+ + S +++ D++V+ F + + QK EKE +
Sbjct: 1525 LEKDVMLLCQNAQTFNLEGS-LIYEDSIVLQSVFTS---------VRQKIEKEDDSEGEE 1574
Query: 395 LITEEDLKQISTLESVSTSKKDK-KDERRRKATEGSGSMRGGGGGNAREYKIKKVKKKGR 453
EE+ ++ + ES S S K K K R+ KA + ++GG +R + K V
Sbjct: 1575 SEEEEEGEEEGS-ESESRSVKVKIKLGRKEKAQD---RLKGGRRRPSRGSRAKPVVS--- 1627
Query: 454 KDDDSDDESQSSHTGKKKPE 473
DDDS++E + +G E
Sbjct: 1628 -DDDSEEEQEEDRSGSGSEE 1646
>gi|32528306 replication factor C large subunit [Homo sapiens]
Length = 1147
Score = 36.6 bits (83), Expect = 0.094
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 408 ESVSTSKKDKKDERRRKATEGSGSMRGGGGGNAREYKIKKVKKKGRKDDDSDDESQSS-- 465
E+V ++K K DE KA +G ++ ++K K+ KK R DSD ES+ +
Sbjct: 19 ETVKKNEKTKSDEETLKAKKGIKEIKVNSSRKEDDFKQKQPSKKKRIIYDSDSESEETLQ 78
Query: 466 -HTGKKKPE 473
KK PE
Sbjct: 79 VKNAKKPPE 87
>gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens]
Length = 1946
Score = 36.6 bits (83), Expect = 0.094
Identities = 71/336 (21%), Positives = 129/336 (38%), Gaps = 52/336 (15%)
Query: 366 EKFINDCTELFRELMHQKAEKEMKNNPVHLITEEDLKQISTLES-VSTSKKDKKDERRRK 424
+K DC L + ++ K + + + E ++ E+ V +D +D ++
Sbjct: 1346 QKAQRDCDLLREQYEEEQEVKAELHRTLSKVNAEMVQWRMKYENNVIQRTEDLEDAKKEL 1405
Query: 425 ATEGSGSMRGGGGGNAREYKIKKVKKKGRKD--DDSDDESQSSHTGKKKPEISFMFQDEI 482
A + G NAR +++ + + + + D D + + + +
Sbjct: 1406 AIRLQEAAEAMGVANARNASLERARHQLQLELGDALSDLGKVRSAAARLDQKQLQSGKAL 1465
Query: 483 EDFLRKH-----IQDAPEEFISELAEYLIKPLNKTYLEVVRSVFMSSTTSASGTGRKRTI 537
D+ +KH + DA ++ + L+ L+K L TY E S+ T +R
Sbjct: 1466 ADWKQKHEESQALLDASQKEVQALSTELLK-LKNTYEE---SIVGQETL-------RREN 1514
Query: 538 KDLQEEVSNLYNNIRLFEKGMKFFADDTQAALTKHLLKSVCTDITNLIFNFLASDLMMAV 597
K+LQEE+SNL N +R K + T+ K L++ T++ + +
Sbjct: 1515 KNLQEEISNLTNQVREGTKNL------TEMEKVKKLIEEEKTEV------------QVTL 1556
Query: 598 DDPAAITSEIRKKILSKLSEETKVALTKLHNSLNEK-------------SIEDFISCLDS 644
++ KIL E A +L L+EK +I+ S LDS
Sbjct: 1557 EETEGALERNESKIL-HFQLELLEAKAELERKLSEKDEEIENFRRKQQCTIDSLQSSLDS 1615
Query: 645 AAEACDIMVKRGDKKRERQILFQHRQALAEQLKVTE 680
A++ I V R KK E + Q +V+E
Sbjct: 1616 EAKS-RIEVTRLKKKMEEDLNEMELQLSCANRQVSE 1650
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 36.2 bits (82), Expect = 0.12
Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 25/187 (13%)
Query: 406 TLESVSTSKKDKKDERRRKATEGSGSMRGGGGGNAREY--KIKKVKKKGRKDDDSDDESQ 463
TLE + + KK R+RK +GS +R+ + KK KK+GR + +
Sbjct: 1428 TLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNP 1487
Query: 464 SSHTGKKKPEISFMFQDEIEDFLRKHIQDAPEEFISELAEYLIKPLNK---TYLEVVRS- 519
+ T K K +I D + K+ + +SE+ ++ P K Y E++R
Sbjct: 1488 PNLTKKMK---------KIVDAVIKYKDSSSGRQLSEV--FIQLPSRKELPEYYELIRKP 1536
Query: 520 VFMSSTTSASGTGRKRTIKDLQEEVSNLYNNIRLFE-KGMKFFADDTQAALTKHLLKSVC 578
V + R++ DL+++V L N + F +G + D +L+SV
Sbjct: 1537 VDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSI-------VLQSVF 1589
Query: 579 TDITNLI 585
T + I
Sbjct: 1590 TSVRQKI 1596
Score = 34.3 bits (77), Expect = 0.47
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 335 VEDAAILLQQVMRAFSKQASTVVFSDTVVVSEKFINDCTELFRELMHQKAEKEMKNNPVH 394
+E +LL Q + F+ + S +++ D++V+ F + + QK EKE +
Sbjct: 1557 LEKDVMLLCQNAQTFNLEGS-LIYEDSIVLQSVFTS---------VRQKIEKEDDSEGEE 1606
Query: 395 LITEEDLKQISTLESVSTSKKDK-KDERRRKATEGSGSMRGGGGGNAREYKIKKVKKKGR 453
EE+ ++ + ES S S K K K R+ KA + ++GG +R + K V
Sbjct: 1607 SEEEEEGEEEGS-ESESRSVKVKIKLGRKEKAQD---RLKGGRRRPSRGSRAKPVVS--- 1659
Query: 454 KDDDSDDESQSSHTGKKKPE 473
DDDS++E + +G E
Sbjct: 1660 -DDDSEEEQEEDRSGSGSEE 1678
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 36.2 bits (82), Expect = 0.12
Identities = 57/235 (24%), Positives = 96/235 (40%), Gaps = 37/235 (15%)
Query: 369 INDCTELFRELMHQKAEKEMKNNPVH---------LITEEDLKQIS--TLESVSTSKKDK 417
I D E+ R ++ EK H L ++ LK I TLE + + K
Sbjct: 1315 IKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQK 1374
Query: 418 KDERRRKATEGSGSMRGGGGGNAREY--KIKKVKKKGRKDDDSDDESQSSHTGKKKPEIS 475
K R+RK +GS +R+ + KK KK+GR + + + T K K
Sbjct: 1375 KSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMK---- 1430
Query: 476 FMFQDEIEDFLRKHIQDAPEEFISELAEYLIKPLNK---TYLEVVRS-VFMSSTTSASGT 531
+I D + K+ +D+ +SE+ ++ P K Y E++R V
Sbjct: 1431 -----KIVDAVIKY-KDSSGRQLSEV--FIQLPSRKELPEYYELIRKPVDFKKIKERIRN 1482
Query: 532 GRKRTIKDLQEEVSNLYNNIRLFE-KGMKFFADDTQAALTKHLLKSVCTDITNLI 585
+ R++ DL+++V L N + F +G + D +L+SV T + I
Sbjct: 1483 HKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSI-------VLQSVFTSVRQKI 1530
Score = 34.3 bits (77), Expect = 0.47
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 335 VEDAAILLQQVMRAFSKQASTVVFSDTVVVSEKFINDCTELFRELMHQKAEKEMKNNPVH 394
+E +LL Q + F+ + S +++ D++V+ F + + QK EKE +
Sbjct: 1491 LEKDVMLLCQNAQTFNLEGS-LIYEDSIVLQSVFTS---------VRQKIEKEDDSEGEE 1540
Query: 395 LITEEDLKQISTLESVSTSKKDK-KDERRRKATEGSGSMRGGGGGNAREYKIKKVKKKGR 453
EE+ ++ + ES S S K K K R+ KA + ++GG +R + K V
Sbjct: 1541 SEEEEEGEEEGS-ESESRSVKVKIKLGRKEKAQD---RLKGGRRRPSRGSRAKPVVS--- 1593
Query: 454 KDDDSDDESQSSHTGKKKPE 473
DDDS++E + +G E
Sbjct: 1594 -DDDSEEEQEEDRSGSGSEE 1612
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 36.2 bits (82), Expect = 0.12
Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 25/187 (13%)
Query: 406 TLESVSTSKKDKKDERRRKATEGSGSMRGGGGGNAREY--KIKKVKKKGRKDDDSDDESQ 463
TLE + + KK R+RK +GS +R+ + KK KK+GR + +
Sbjct: 1366 TLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNP 1425
Query: 464 SSHTGKKKPEISFMFQDEIEDFLRKHIQDAPEEFISELAEYLIKPLNK---TYLEVVRS- 519
+ T K K +I D + K+ + +SE+ ++ P K Y E++R
Sbjct: 1426 PNLTKKMK---------KIVDAVIKYKDSSSGRQLSEV--FIQLPSRKELPEYYELIRKP 1474
Query: 520 VFMSSTTSASGTGRKRTIKDLQEEVSNLYNNIRLFE-KGMKFFADDTQAALTKHLLKSVC 578
V + R++ DL+++V L N + F +G + D +L+SV
Sbjct: 1475 VDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSI-------VLQSVF 1527
Query: 579 TDITNLI 585
T + I
Sbjct: 1528 TSVRQKI 1534
Score = 34.3 bits (77), Expect = 0.47
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 335 VEDAAILLQQVMRAFSKQASTVVFSDTVVVSEKFINDCTELFRELMHQKAEKEMKNNPVH 394
+E +LL Q + F+ + S +++ D++V+ F + + QK EKE +
Sbjct: 1495 LEKDVMLLCQNAQTFNLEGS-LIYEDSIVLQSVFTS---------VRQKIEKEDDSEGEE 1544
Query: 395 LITEEDLKQISTLESVSTSKKDK-KDERRRKATEGSGSMRGGGGGNAREYKIKKVKKKGR 453
EE+ ++ + ES S S K K K R+ KA + ++GG +R + K V
Sbjct: 1545 SEEEEEGEEEGS-ESESRSVKVKIKLGRKEKAQD---RLKGGRRRPSRGSRAKPVVS--- 1597
Query: 454 KDDDSDDESQSSHTGKKKPE 473
DDDS++E + +G E
Sbjct: 1598 -DDDSEEEQEEDRSGSGSEE 1616
>gi|48255931 hepatoma-derived growth factor-related protein 2
isoform 1 [Homo sapiens]
Length = 671
Score = 36.2 bits (82), Expect = 0.12
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 402 KQISTLESVSTSKKDKKDERRRKATEGSGSMRGGGGGNAREYKI--KKVKKKGRK----- 454
+Q L + +K++K+ RR +A G RG GG + E + + VKK+GRK
Sbjct: 334 EQEEELRRLREQEKEEKERRRERADRGEAE-RGSGGSSGDELREDDEPVKKRGRKGRGRG 392
Query: 455 ---DDDSDDESQSSHTGK---KKPEIS 475
DS+ E++ K KKP+ S
Sbjct: 393 PPSSSDSEPEAELEREAKKSAKKPQSS 419
>gi|14249158 hepatoma-derived growth factor-related protein 2
isoform 2 [Homo sapiens]
Length = 670
Score = 36.2 bits (82), Expect = 0.12
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 402 KQISTLESVSTSKKDKKDERRRKATEGSGSMRGGGGGNAREYKI--KKVKKKGRK----- 454
+Q L + +K++K+ RR +A G RG GG + E + + VKK+GRK
Sbjct: 334 EQEEELRRLREQEKEEKERRRERADRGEAE-RGSGGSSGDELREDDEPVKKRGRKGRGRG 392
Query: 455 ---DDDSDDESQSSHTGK---KKPEIS 475
DS+ E++ K KKP+ S
Sbjct: 393 PPSSSDSEPEAELEREAKKSAKKPQSS 419
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 35.4 bits (80), Expect = 0.21
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 26/187 (13%)
Query: 406 TLESVSTSKKDKKDERRRKATEGSGSMRGGGGGNAREY--KIKKVKKKGRKDDDSDDESQ 463
TLE + + KK R+RK +GS +R+ + KK KK+GR + +
Sbjct: 1366 TLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNP 1425
Query: 464 SSHTGKKKPEISFMFQDEIEDFLRKHIQDAPEEFISELAEYLIKPLNK---TYLEVVRS- 519
+ T K K +I D + K+ +D+ +SE+ ++ P K Y E++R
Sbjct: 1426 PNLTKKMK---------KIVDAVIKY-KDSSGRQLSEV--FIQLPSRKELPEYYELIRKP 1473
Query: 520 VFMSSTTSASGTGRKRTIKDLQEEVSNLYNNIRLFE-KGMKFFADDTQAALTKHLLKSVC 578
V + R++ DL+++V L N + F +G + D +L+SV
Sbjct: 1474 VDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSI-------VLQSVF 1526
Query: 579 TDITNLI 585
T + I
Sbjct: 1527 TSVRQKI 1533
Score = 34.3 bits (77), Expect = 0.47
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 335 VEDAAILLQQVMRAFSKQASTVVFSDTVVVSEKFINDCTELFRELMHQKAEKEMKNNPVH 394
+E +LL Q + F+ + S +++ D++V+ F + + QK EKE +
Sbjct: 1494 LEKDVMLLCQNAQTFNLEGS-LIYEDSIVLQSVFTS---------VRQKIEKEDDSEGEE 1543
Query: 395 LITEEDLKQISTLESVSTSKKDK-KDERRRKATEGSGSMRGGGGGNAREYKIKKVKKKGR 453
EE+ ++ + ES S S K K K R+ KA + ++GG +R + K V
Sbjct: 1544 SEEEEEGEEEGS-ESESRSVKVKIKLGRKEKAQD---RLKGGRRRPSRGSRAKPVVS--- 1596
Query: 454 KDDDSDDESQSSHTGKKKPE 473
DDDS++E + +G E
Sbjct: 1597 -DDDSEEEQEEDRSGSGSEE 1615
>gi|6631095 minichromosome maintenance complex component 3 [Homo
sapiens]
Length = 808
Score = 35.4 bits (80), Expect = 0.21
Identities = 49/260 (18%), Positives = 99/260 (38%), Gaps = 32/260 (12%)
Query: 322 WVDIAPLLPTSLSVEDAAILLQQVMRAFSKQASTVVFSDTVVVS-------EKFINDCTE 374
++ +A ++ L+ E A + ++ R S+ + + SDT S E I T
Sbjct: 571 YIHVAKIIKPVLTQESATYIAEEYSRLRSQDSMS---SDTARTSPVTARTLETLIRLATA 627
Query: 375 LFRELMHQKAEKEMKNNPVHLITEEDLKQISTLESVSTSKKDKKDERRRKATEGSGSMRG 434
+ M + + + V L+ K++ LE KK +DE + E
Sbjct: 628 HAKARMSKTVDLQDAEEAVELVQYAYFKKV--LEKEKKRKKRSEDESETEDEEEKSQE-- 683
Query: 435 GGGGNAREYKIKKVKKKGRKDDDSDDESQSSHTGKKKPEISFMFQDEIEDFLRKHIQDAP 494
++ K +K ++ KD DS D S T ++ P++ + Q+
Sbjct: 684 ---DQEQKRKRRKTRQPDAKDGDSYDPYDFSDTEEEMPQVHTPKTAD--------SQETK 732
Query: 495 EEFISELAEYLIKPLNKTYLEVVRSVFMSSTTSASGTGRKRTIKDLQEEVSNLYNNIRLF 554
E EL+E +K L+V R A G R + + + ++++ +
Sbjct: 733 ESQKVELSESRLKAFKVALLDVFRE------AHAQSIGMNRLTESINRDSEEPFSSVEI- 785
Query: 555 EKGMKFFADDTQAALTKHLL 574
+ + DD Q +++ ++
Sbjct: 786 QAALSKMQDDNQVMVSEGII 805
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 35.0 bits (79), Expect = 0.27
Identities = 59/301 (19%), Positives = 115/301 (38%), Gaps = 62/301 (20%)
Query: 383 KAEKEMKNNPVHLITEEDLKQISTLES-VSTSKKDKKDERRRKATEGSGSMRGGGGGNAR 441
K KE+K ++ ED + ES VS + +DE+R + + N R
Sbjct: 1323 KEHKEVKGRNRRKVSSEDSEDSDFQESGVSEEVSESEDEQRPRTRSAK---KAELEENQR 1379
Query: 442 EYKIKKVKK--KGRKDDDSDDESQSSHTGKKKPEISFMFQDEIEDFLRKHIQDAPEEFIS 499
YK KK ++ K ++D S+++S S ++K E ++E E+ + +D ++
Sbjct: 1380 SYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEE-----EEEEEEEEEEEEEDENDD--- 1431
Query: 500 ELAEYLIKPLNKTYLEVVRSVFMSSTTSASGTGRKRTIKDLQEEV--SNLYNNIRLFEKG 557
+ + G GRK+ K L+++ + N ++ E+
Sbjct: 1432 --------------------------SKSPGKGRKKIRKILKDDKLRTETQNALKEEEER 1465
Query: 558 MKFFADDTQAALTKHLLKSVCTDITNLIFNFLASDLMMAVDDPAAITSEIRKKILSKLSE 617
K A+ + + L+ V + ++D + I K++ E
Sbjct: 1466 RKRIAERER---EREKLREV-----------------IEIEDASPTKCPITTKLVLDEDE 1505
Query: 618 ETKVALTKLHNSLNEKSIEDFISCLDSAAEACDIMVKRGDKKRERQILFQHRQALAEQLK 677
ETK L ++H ++ K + + + C VK+ K + H L + L+
Sbjct: 1506 ETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQ 1565
Query: 678 V 678
V
Sbjct: 1566 V 1566
Score = 30.0 bits (66), Expect = 8.8
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 8/119 (6%)
Query: 364 VSEKFINDCTELFRE-LMHQKAEKEMKNNPVHLITEEDLKQISTLESVSTSKKDKKDERR 422
+SE +N + + L H E E ++P L ++ +IS S S D + +
Sbjct: 6 MSESKLNTLVQKLHDFLAHSSEESEETSSPPRLAMNQNTDKISG----SGSNSDMMENSK 61
Query: 423 RKATEGSGSMRGGGGGNAREYKIKKVKKKGRKDDDS--DDESQSSHTGKKKPEISFMFQ 479
+ T S + G ++ K V K DD+ DDE+ + + E Q
Sbjct: 62 EEGTSSSEKSKSSGSSRSKR-KPSIVTKYVESDDEKPLDDETVNEDASNENSENDITMQ 119
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 35.0 bits (79), Expect = 0.27
Identities = 59/301 (19%), Positives = 115/301 (38%), Gaps = 62/301 (20%)
Query: 383 KAEKEMKNNPVHLITEEDLKQISTLES-VSTSKKDKKDERRRKATEGSGSMRGGGGGNAR 441
K KE+K ++ ED + ES VS + +DE+R + + N R
Sbjct: 1361 KEHKEVKGRNRRKVSSEDSEDSDFQESGVSEEVSESEDEQRPRTRSAK---KAELEENQR 1417
Query: 442 EYKIKKVKK--KGRKDDDSDDESQSSHTGKKKPEISFMFQDEIEDFLRKHIQDAPEEFIS 499
YK KK ++ K ++D S+++S S ++K E ++E E+ + +D ++
Sbjct: 1418 SYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEE-----EEEEEEEEEEEEEDENDD--- 1469
Query: 500 ELAEYLIKPLNKTYLEVVRSVFMSSTTSASGTGRKRTIKDLQEEV--SNLYNNIRLFEKG 557
+ + G GRK+ K L+++ + N ++ E+
Sbjct: 1470 --------------------------SKSPGKGRKKIRKILKDDKLRTETQNALKEEEER 1503
Query: 558 MKFFADDTQAALTKHLLKSVCTDITNLIFNFLASDLMMAVDDPAAITSEIRKKILSKLSE 617
K A+ + + L+ V + ++D + I K++ E
Sbjct: 1504 RKRIAERER---EREKLREV-----------------IEIEDASPTKCPITTKLVLDEDE 1543
Query: 618 ETKVALTKLHNSLNEKSIEDFISCLDSAAEACDIMVKRGDKKRERQILFQHRQALAEQLK 677
ETK L ++H ++ K + + + C VK+ K + H L + L+
Sbjct: 1544 ETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQ 1603
Query: 678 V 678
V
Sbjct: 1604 V 1604
Score = 30.0 bits (66), Expect = 8.8
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 8/119 (6%)
Query: 364 VSEKFINDCTELFRE-LMHQKAEKEMKNNPVHLITEEDLKQISTLESVSTSKKDKKDERR 422
+SE +N + + L H E E ++P L ++ +IS S S D + +
Sbjct: 6 MSESKLNTLVQKLHDFLAHSSEESEETSSPPRLAMNQNTDKISG----SGSNSDMMENSK 61
Query: 423 RKATEGSGSMRGGGGGNAREYKIKKVKKKGRKDDDS--DDESQSSHTGKKKPEISFMFQ 479
+ T S + G ++ K V K DD+ DDE+ + + E Q
Sbjct: 62 EEGTSSSEKSKSSGSSRSKR-KPSIVTKYVESDDEKPLDDETVNEDASNENSENDITMQ 119
>gi|224591430 Ly1 antibody reactive homolog [Homo sapiens]
Length = 379
Score = 35.0 bits (79), Expect = 0.27
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 369 INDCTELFRELMHQKAEKEMKNNPVHLITEEDLKQISTLESVSTSKKDKKDERRRKATEG 428
+ D E E+ K E++ + +++LK LE+ + +++K ++R+K E
Sbjct: 174 VKDAVEQQGEVKKNKRERKEERQKKRKREKKELK----LENHQENSRNQKPKKRKKGQEA 229
Query: 429 SGSMRGGGGGNAREYKIKKVKKKGRKDDDSDDESQSSHTGKKKPEISFMFQDEIEDFLRK 488
G A K+ KKK ++ D + +E GK+K S E+E +K
Sbjct: 230 DLEAGGEEVPEANGSAGKRSKKKKQRKDSASEEEARVGAGKRKRRHS-----EVETDSKK 284
Query: 489 HIQDAPE 495
PE
Sbjct: 285 KKMKLPE 291
>gi|8923398 Ly1 antibody reactive homolog [Homo sapiens]
Length = 379
Score = 35.0 bits (79), Expect = 0.27
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 369 INDCTELFRELMHQKAEKEMKNNPVHLITEEDLKQISTLESVSTSKKDKKDERRRKATEG 428
+ D E E+ K E++ + +++LK LE+ + +++K ++R+K E
Sbjct: 174 VKDAVEQQGEVKKNKRERKEERQKKRKREKKELK----LENHQENSRNQKPKKRKKGQEA 229
Query: 429 SGSMRGGGGGNAREYKIKKVKKKGRKDDDSDDESQSSHTGKKKPEISFMFQDEIEDFLRK 488
G A K+ KKK ++ D + +E GK+K S E+E +K
Sbjct: 230 DLEAGGEEVPEANGSAGKRSKKKKQRKDSASEEEARVGAGKRKRRHS-----EVETDSKK 284
Query: 489 HIQDAPE 495
PE
Sbjct: 285 KKMKLPE 291
>gi|104526627 triadin [Homo sapiens]
Length = 729
Score = 35.0 bits (79), Expect = 0.27
Identities = 34/165 (20%), Positives = 74/165 (44%), Gaps = 5/165 (3%)
Query: 382 QKAEKEMKNNPVHLITEEDLKQISTLESVSTSKKDKKDERRRKATEGSGSMRGGGGGNAR 441
++A + +P E + K+ + T KK+K+D +++ E + + G A
Sbjct: 297 EQASRPTPASPALEEKEGEKKKAEKKVTSETKKKEKEDIKKKSEKETAIDVEKKEPGKAS 356
Query: 442 EYKIKKVKKKGRKDDDSDDESQSSHTGKKKPEISFMFQDEIEDFLRKHIQDA--PEEFIS 499
E K VK + D++ + S KK E+ + + ++ KH++ A P++ S
Sbjct: 357 ETKQGTVKIAAQAAAKKDEKKEDSKKTKKPAEVE-QPKGKKQEKKEKHVEPAKSPKKEHS 415
Query: 500 ELAEYLIKPLNKTYLEVVRSVFMSSTTSASGTGRKRTIKDLQEEV 544
++ +K + E + +V S + G ++T K +++E+
Sbjct: 416 VPSDKQVKAKTERAKEEIGAV--SIKKAVPGKKEEKTTKTVEQEI 458
>gi|13540523 nucleosomal binding protein 1 [Homo sapiens]
Length = 282
Score = 34.7 bits (78), Expect = 0.36
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 415 KDKKDERRRKAT-EGSGSMRGGGGGNAREYKIKKVKK--KGRKDDDSDDESQSSHTGKKK 471
+D+K+E RK T +G + G G+ +E K KVK+ K R+D D+ GK+K
Sbjct: 194 EDEKEEEDRKETGDGKENEDGKEKGDKKEGKDVKVKEDEKEREDGKEDEGGNEEEAGKEK 253
Query: 472 PEISFMFQDEIEDFLRK 488
++ + + ED +++
Sbjct: 254 EDLKEEEEGKEEDEIKE 270
>gi|14165413 protocadherin alpha 4 isoform 2 precursor [Homo
sapiens]
Length = 798
Score = 34.7 bits (78), Expect = 0.36
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 76 RVNIVDLQQVINVDLIH-IENRIGDIIKSEKHVQLVLGQLIDENYLD---RLAEEVNDKL 131
++N DL + +N D+++ N I +KS+ H+ + GQ+I + Y+D + E+ +
Sbjct: 263 KLNASDLDEGLNGDIVYSFSNDISPNVKSKFHIDPITGQIIVKGYIDFEESKSYEIIVEG 322
Query: 132 QESGQVTISELCK 144
+ GQ+ +S C+
Sbjct: 323 IDKGQLPLSGHCR 335
>gi|9256588 protocadherin alpha 4 isoform 1 precursor [Homo sapiens]
Length = 947
Score = 34.7 bits (78), Expect = 0.36
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 76 RVNIVDLQQVINVDLIH-IENRIGDIIKSEKHVQLVLGQLIDENYLD---RLAEEVNDKL 131
++N DL + +N D+++ N I +KS+ H+ + GQ+I + Y+D + E+ +
Sbjct: 263 KLNASDLDEGLNGDIVYSFSNDISPNVKSKFHIDPITGQIIVKGYIDFEESKSYEIIVEG 322
Query: 132 QESGQVTISELCK 144
+ GQ+ +S C+
Sbjct: 323 IDKGQLPLSGHCR 335
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 34.3 bits (77), Expect = 0.47
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
Query: 411 STSKKDKKDERRRKATEGSGSMRGGGGGNAREYKIKK-------------VKKKGRKDDD 457
S + KDE + +G G++ GG N + K KK KKK +K
Sbjct: 1331 SLGSQGAKDEPEEELQKGMGTVEGGDQSNPKSKKEKKKSDKRKKDKEKKEKKKKAKKAST 1390
Query: 458 SDDESQSSHTGKKK 471
D ES S KKK
Sbjct: 1391 KDSESPSQKKKKKK 1404
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 34.3 bits (77), Expect = 0.47
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
Query: 411 STSKKDKKDERRRKATEGSGSMRGGGGGNAREYKIKK-------------VKKKGRKDDD 457
S + KDE + +G G++ GG N + K KK KKK +K
Sbjct: 1370 SLGSQGAKDEPEEELQKGMGTVEGGDQSNPKSKKEKKKSDKRKKDKEKKEKKKKAKKAST 1429
Query: 458 SDDESQSSHTGKKK 471
D ES S KKK
Sbjct: 1430 KDSESPSQKKKKKK 1443
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 34.3 bits (77), Expect = 0.47
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
Query: 411 STSKKDKKDERRRKATEGSGSMRGGGGGNAREYKIKK-------------VKKKGRKDDD 457
S + KDE + +G G++ GG N + K KK KKK +K
Sbjct: 1407 SLGSQGAKDEPEEELQKGMGTVEGGDQSNPKSKKEKKKSDKRKKDKEKKEKKKKAKKAST 1466
Query: 458 SDDESQSSHTGKKK 471
D ES S KKK
Sbjct: 1467 KDSESPSQKKKKKK 1480
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,950,389
Number of Sequences: 37866
Number of extensions: 1098185
Number of successful extensions: 6218
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 5877
Number of HSP's gapped (non-prelim): 335
length of query: 794
length of database: 18,247,518
effective HSP length: 110
effective length of query: 684
effective length of database: 14,082,258
effective search space: 9632264472
effective search space used: 9632264472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.