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Search of human proteins with 242117893
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|242117893 BCL2-associated X protein isoform sigma [Homo
sapiens]
(179 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|242117893 BCL2-associated X protein isoform sigma [Homo sapiens] 362 e-100
gi|20631958 BCL2-associated X protein isoform alpha [Homo sapiens] 352 7e-98
gi|4757838 BCL2-associated X protein isoform beta [Homo sapiens] 322 1e-88
gi|20631964 BCL2-associated X protein isoform delta [Homo sapiens] 230 6e-61
gi|72198189 B-cell lymphoma protein 2 alpha isoform [Homo sapiens] 58 4e-09
gi|20336335 BCL2-like 1 isoform 1 [Homo sapiens] 58 5e-09
gi|14210524 BCL2-related ovarian killer [Homo sapiens] 58 5e-09
gi|72198346 B-cell lymphoma protein 2 beta isoform [Homo sapiens] 57 6e-09
gi|4757842 BCL2-like 2 protein [Homo sapiens] 56 2e-08
gi|239751987 PREDICTED: hypothetical protein XP_002348091 [Homo ... 55 2e-08
gi|4502363 BCL2-antagonist/killer 1 [Homo sapiens] 54 7e-08
gi|168480072 BCL2-related protein A1 isoform 2 [Homo sapiens] 51 6e-07
gi|4757840 BCL2-related protein A1 isoform 1 [Homo sapiens] 51 6e-07
gi|11386165 myeloid cell leukemia sequence 1 isoform 1 [Homo sap... 50 1e-06
gi|21040330 BCL2-like 14 isoform 1 [Homo sapiens] 32 0.38
gi|21040328 BCL2-like 14 isoform 1 [Homo sapiens] 32 0.38
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 30 1.4
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 30 1.4
gi|7657058 eukaryotic translation initiation factor 2B, subunit ... 30 1.4
gi|6005830 plakophilin 3 [Homo sapiens] 29 1.9
gi|189303549 speedy homolog E4 [Homo sapiens] 29 2.5
gi|73623035 sperm associated antigen 5 [Homo sapiens] 28 5.5
gi|66730423 hypothetical protein LOC389384 [Homo sapiens] 27 7.2
gi|150418007 RAN binding protein 2 [Homo sapiens] 27 9.4
gi|4506339 peroxisomal biogenesis factor 19 isoform a [Homo sapi... 27 9.4
>gi|242117893 BCL2-associated X protein isoform sigma [Homo sapiens]
Length = 179
Score = 362 bits (928), Expect = e-100
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MDGSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLS 60
MDGSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLS
Sbjct: 1 MDGSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLS 60
Query: 61 ECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKL 120
ECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKL
Sbjct: 61 ECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKL 120
Query: 121 VLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWTVTIFVAGVLTASLTIWKKMG 179
VLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWTVTIFVAGVLTASLTIWKKMG
Sbjct: 121 VLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWTVTIFVAGVLTASLTIWKKMG 179
>gi|20631958 BCL2-associated X protein isoform alpha [Homo sapiens]
Length = 192
Score = 352 bits (904), Expect = 7e-98
Identities = 179/192 (93%), Positives = 179/192 (93%), Gaps = 13/192 (6%)
Query: 1 MDGSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLS 60
MDGSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLS
Sbjct: 1 MDGSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLS 60
Query: 61 ECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKL 120
ECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKL
Sbjct: 61 ECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKL 120
Query: 121 VLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGW-------------TVTIFVAGV 167
VLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGW TVTIFVAGV
Sbjct: 121 VLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWDGLLSYFGTPTWQTVTIFVAGV 180
Query: 168 LTASLTIWKKMG 179
LTASLTIWKKMG
Sbjct: 181 LTASLTIWKKMG 192
>gi|4757838 BCL2-associated X protein isoform beta [Homo sapiens]
Length = 218
Score = 322 bits (824), Expect = 1e-88
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MDGSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLS 60
MDGSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLS
Sbjct: 1 MDGSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLS 60
Query: 61 ECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKL 120
ECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKL
Sbjct: 61 ECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKL 120
Query: 121 VLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGW 158
VLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGW
Sbjct: 121 VLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGW 158
>gi|20631964 BCL2-associated X protein isoform delta [Homo sapiens]
Length = 143
Score = 230 bits (586), Expect = 6e-61
Identities = 129/192 (67%), Positives = 129/192 (67%), Gaps = 62/192 (32%)
Query: 1 MDGSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLS 60
MDGSGEQPRGGGPTSSEQIMKTGALLL
Sbjct: 1 MDGSGEQPRGGGPTSSEQIMKTGALLL--------------------------------- 27
Query: 61 ECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKL 120
Q MIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKL
Sbjct: 28 ----------------QGMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKL 71
Query: 121 VLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGW-------------TVTIFVAGV 167
VLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGW TVTIFVAGV
Sbjct: 72 VLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWDGLLSYFGTPTWQTVTIFVAGV 131
Query: 168 LTASLTIWKKMG 179
LTASLTIWKKMG
Sbjct: 132 LTASLTIWKKMG 143
>gi|72198189 B-cell lymphoma protein 2 alpha isoform [Homo sapiens]
Length = 239
Score = 58.2 bits (139), Expect = 4e-09
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 40 GEAPELALDPVPQDASTKKLSECLKRIGDELDSNMELQRMIAAVDTD------SPREVFF 93
G A AL PVP L++ GD D + +R A + + + R F
Sbjct: 79 GAAAGPALSPVPPVVHLT-----LRQAGD--DFSRRYRRDFAEMSSQLHLTPFTARGRFA 131
Query: 94 RVAADMFSDGNFNWGRVVALFYFASKLVLKALCTKVPELIRTIMGWTLDFLRERLLGWIQ 153
V ++F DG NWGR+VA F F + ++++ ++ L+ I W ++L L WIQ
Sbjct: 132 TVVEELFRDG-VNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQ 190
Query: 154 DQGGWTVTIFVAG 166
D GGW + + G
Sbjct: 191 DNGGWDAFVELYG 203
>gi|20336335 BCL2-like 1 isoform 1 [Homo sapiens]
Length = 233
Score = 57.8 bits (138), Expect = 5e-09
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 59 LSECLKRIGDELDSNMELQRMIAAVDTDSPREV--------FFRVAADMFSDGNFNWGRV 110
+ + L+ GDE EL+ A D S + F +V ++F DG NWGR+
Sbjct: 86 VKQALREAGDEF----ELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDG-VNWGRI 140
Query: 111 VALFYFASKLVLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWTVTIFVAG 166
VA F F L ++++ ++ L+ I W +L + L WIQ+ GGW + + G
Sbjct: 141 VAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG 196
>gi|14210524 BCL2-related ovarian killer [Homo sapiens]
Length = 212
Score = 57.8 bits (138), Expect = 5e-09
Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 13 PTSSEQIMKTGALLLQGFIQDRAGRMG--GEAPELALDPVPQDASTKKLSECLKRIGDEL 70
PT E + + AL + ++ R R G APE A PVP ++ L R+GDEL
Sbjct: 22 PTDKELVAQAKALGRE-YVHARLLRAGLSWSAPERAA-PVP--GRLAEVCAVLLRLGDEL 77
Query: 71 DS-------NMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKLVLK 123
+ N+ Q I+ + F VA +FS G WG+VV+L+ A+ L +
Sbjct: 78 EMIRPSVYRNVARQLHISLQSEPVVTDAFLAVAGHIFSAG-ITWGKVVSLYAVAAGLAVD 136
Query: 124 ALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWT 159
+ P ++ ++ +F+R+ L W++ +GGWT
Sbjct: 137 CVRQAQPAMVHALVDCLGEFVRKTLATWLRRRGGWT 172
>gi|72198346 B-cell lymphoma protein 2 beta isoform [Homo sapiens]
Length = 205
Score = 57.4 bits (137), Expect = 6e-09
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 14/125 (11%)
Query: 40 GEAPELALDPVPQDASTKKLSECLKRIGDELDSNMELQRMIAAVDTD------SPREVFF 93
G A AL PVP L++ GD D + +R A + + + R F
Sbjct: 79 GAAAGPALSPVPPVVHLT-----LRQAGD--DFSRRYRRDFAEMSSQLHLTPFTARGRFA 131
Query: 94 RVAADMFSDGNFNWGRVVALFYFASKLVLKALCTKVPELIRTIMGWTLDFLRERLLGWIQ 153
V ++F DG NWGR+VA F F + ++++ ++ L+ I W ++L L WIQ
Sbjct: 132 TVVEELFRDG-VNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQ 190
Query: 154 DQGGW 158
D GGW
Sbjct: 191 DNGGW 195
>gi|4757842 BCL2-like 2 protein [Homo sapiens]
Length = 193
Score = 55.8 bits (133), Expect = 2e-08
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 40 GEAPELALDPVPQDASTKKLSECLKRIGDELDSNMELQRMIAA----VDTDSPREVFFRV 95
GE P A DP L + ++ GDE ++ A V S ++ F +V
Sbjct: 34 GEGP--AADP---------LHQAMRAAGDEFETRFRRTFSDLAAQLHVTPGSAQQRFTQV 82
Query: 96 AADMFSDGNFNWGRVVALFYFASKLVLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQ 155
+ ++F G NWGR+VA F F + L +++ ++ L+ + W + +L RL WI
Sbjct: 83 SDELFQGGP-NWGRLVAFFVFGAALCAESVNKEMEPLVGQVQEWMVAYLETRLADWIHSS 141
Query: 156 GGW 158
GGW
Sbjct: 142 GGW 144
>gi|239751987 PREDICTED: hypothetical protein XP_002348091 [Homo
sapiens]
Length = 211
Score = 55.5 bits (132), Expect = 2e-08
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 32 QDRAGRMGGEAPELALDPVPQDASTKKLSECLKRIGDELDS--NMELQRMIAAVD--TDS 87
Q+ G PE+ P+ ++ ++ L IGD+++ + E Q M+ + ++
Sbjct: 47 QEAEGAAAPADPEMVTLPLQPSSTMGQVGRQLAIIGDDINRRYDSEFQTMLQHLQPTAEN 106
Query: 88 PREVFFRVAADMFSDGNFNWGRVVALFYFASKLVLKALCTKVPELIRTIMGWTLDFLRER 147
E F ++A+ +F G NWGRVVAL F+ +L L + + + + +DF+
Sbjct: 107 AYEYFTKIASSLFESG-INWGRVVALLGFSYRLALHIYQRGLTGFLGQVTRFVVDFMLHH 165
Query: 148 LLG-WIQDQGGWTVTI 162
+ WI +GGW +
Sbjct: 166 CIARWIAQRGGWVAAL 181
>gi|4502363 BCL2-antagonist/killer 1 [Homo sapiens]
Length = 211
Score = 53.9 bits (128), Expect = 7e-08
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 6/136 (4%)
Query: 32 QDRAGRMGGEAPELALDPVPQDASTKKLSECLKRIGDELDS--NMELQRMIAAVD--TDS 87
Q+ G PE+ P+ ++ ++ L IGD+++ + E Q M+ + ++
Sbjct: 47 QEAEGVAAPADPEMVTLPLQPSSTMGQVGRQLAIIGDDINRRYDSEFQTMLQHLQPTAEN 106
Query: 88 PREVFFRVAADMFSDGNFNWGRVVALFYFASKLVLKALCTKVPELIRTIMGWTLDFLRER 147
E F ++A +F G NWGRVVAL F +L L + + + + +DF+
Sbjct: 107 AYEYFTKIATSLFESG-INWGRVVALLGFGYRLALHVYQHGLTGFLGQVTRFVVDFMLHH 165
Query: 148 LLG-WIQDQGGWTVTI 162
+ WI +GGW +
Sbjct: 166 CIARWIAQRGGWVAAL 181
>gi|168480072 BCL2-related protein A1 isoform 2 [Homo sapiens]
Length = 163
Score = 50.8 bits (120), Expect = 6e-07
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 50 VPQDAS-TKKLSECLKRIGDELDSNMELQRM-----IAAVDTDSPREVFFRVAADMFSDG 103
+PQ S K S L+ + + +E + V D+ R +F +V F DG
Sbjct: 23 IPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVMEKEFEDG 82
Query: 104 NFNWGRVVALFYFASKLVLKALCTKVP---ELIRTIMGWTLDFLRERLLGWIQDQGGW 158
NWGR+V +F F L+ K L ++ + + I + +F+ WI+ GGW
Sbjct: 83 IINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNGGW 140
>gi|4757840 BCL2-related protein A1 isoform 1 [Homo sapiens]
Length = 175
Score = 50.8 bits (120), Expect = 6e-07
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 50 VPQDAS-TKKLSECLKRIGDELDSNMELQRM-----IAAVDTDSPREVFFRVAADMFSDG 103
+PQ S K S L+ + + +E + V D+ R +F +V F DG
Sbjct: 23 IPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVMEKEFEDG 82
Query: 104 NFNWGRVVALFYFASKLVLKALCTKVP---ELIRTIMGWTLDFLRERLLGWIQDQGGW 158
NWGR+V +F F L+ K L ++ + + I + +F+ WI+ GGW
Sbjct: 83 IINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNGGW 140
>gi|11386165 myeloid cell leukemia sequence 1 isoform 1 [Homo
sapiens]
Length = 350
Score = 49.7 bits (117), Expect = 1e-06
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 54 ASTKKLSECLKRIGDELDSNME--LQRMIAAVDTDSPREV--FFRVAADMFSDGNFNWGR 109
A+++K E L+R+GD + N E Q M+ +D + +V RV +FSDG NWGR
Sbjct: 204 ATSRKALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGR 263
Query: 110 VVALFYFASKLVLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGW 158
+V L F + + I + D L W+ Q GW
Sbjct: 264 IVTLISFGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWLVKQRGW 312
>gi|21040330 BCL2-like 14 isoform 1 [Homo sapiens]
Length = 327
Score = 31.6 bits (70), Expect = 0.38
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 58 KLSECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRV-VALFYF 116
K+ E LK GD+L+ ++ + + D F+ D G G V F
Sbjct: 211 KIVELLKYSGDQLERKLKKDKALMGHFQDGLSYSVFKTITDQVLMGVDPRGESEVKAQGF 270
Query: 117 ASKLVLKALCTKVPEL----IRTIMGWTLDFLRERLLGWIQDQGGW 158
+ LV+ + K+ + + ++G+ +L+E WIQ GGW
Sbjct: 271 KAALVID-VTAKLTAIDNHPMNRVLGFGTKYLKENFSPWIQQHGGW 315
>gi|21040328 BCL2-like 14 isoform 1 [Homo sapiens]
Length = 327
Score = 31.6 bits (70), Expect = 0.38
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 58 KLSECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRV-VALFYF 116
K+ E LK GD+L+ ++ + + D F+ D G G V F
Sbjct: 211 KIVELLKYSGDQLERKLKKDKALMGHFQDGLSYSVFKTITDQVLMGVDPRGESEVKAQGF 270
Query: 117 ASKLVLKALCTKVPEL----IRTIMGWTLDFLRERLLGWIQDQGGW 158
+ LV+ + K+ + + ++G+ +L+E WIQ GGW
Sbjct: 271 KAALVID-VTAKLTAIDNHPMNRVLGFGTKYLKENFSPWIQQHGGW 315
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 29.6 bits (65), Expect = 1.4
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 3 GSGEQPRGGG---PTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKL 59
GSG G P+SS + + F Q R G MGG P A PQ +T L
Sbjct: 240 GSGAAAAAGSKPPPSSSASASSSSS----SFAQQRFGAMGGGGPSAAGGGTPQPTATPTL 295
Query: 60 SECL 63
++ L
Sbjct: 296 NQLL 299
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 29.6 bits (65), Expect = 1.4
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 3 GSGEQPRGGG---PTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKL 59
GSG G P+SS + + F Q R G MGG P A PQ +T L
Sbjct: 240 GSGAAAAAGSKPPPSSSASASSSSS----SFAQQRFGAMGGGGPSAAGGGTPQPTATPTL 295
Query: 60 SECL 63
++ L
Sbjct: 296 NQLL 299
>gi|7657058 eukaryotic translation initiation factor 2B, subunit 2
beta, 39kDa [Homo sapiens]
Length = 351
Score = 29.6 bits (65), Expect = 1.4
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 9 RGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPEL 45
RGGGP SSE++ + LL+ I D GE EL
Sbjct: 24 RGGGPRSSEEMARETLGLLRQIITDHRWSNAGELMEL 60
>gi|6005830 plakophilin 3 [Homo sapiens]
Length = 797
Score = 29.3 bits (64), Expect = 1.9
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 3 GSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGR-MGGEAPELALDPVPQDASTKKLSE 61
G + P + S I LQ F R +GG P L+PV + S + LS
Sbjct: 227 GGLDWPEATEVSPSRTIRAPAVRTLQRFQSSHRSRGVGGAVPGAVLEPVARAPSVRSLSL 286
Query: 62 CLKRIG--------DELDSNMELQRMIAAV-DTDSPREVFFRVAAD 98
L G + S+ LQR+ + D D P V + +A+D
Sbjct: 287 SLADSGHLPDVHGFNSYGSHRTLQRLSSGFDDIDLPSAVKYLMASD 332
>gi|189303549 speedy homolog E4 [Homo sapiens]
Length = 237
Score = 28.9 bits (63), Expect = 2.5
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 39 GGEAPELALDPVPQDASTKKLSECLKRIGDELDSNMELQRMIAAVDT 85
G AP + P PQ K+ SE +EL+ +EL+R DT
Sbjct: 34 GPSAPWIDPSPQPQSLGLKRKSEWSDESEEELEEELELERAPEPEDT 80
>gi|73623035 sperm associated antigen 5 [Homo sapiens]
Length = 1193
Score = 27.7 bits (60), Expect = 5.5
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 41 EAPELALDPVPQDASTKKLSECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMF 100
E+ E LDP+PQ +ST K SE D L + M ++ +++ F D
Sbjct: 96 ESDEQPLDPIPQISSTPKTSE---EAVDPLGNYMVKTIVLVPSPLGQQQDMIFEARLDTM 152
Query: 101 SDGN 104
++ N
Sbjct: 153 AETN 156
>gi|66730423 hypothetical protein LOC389384 [Homo sapiens]
Length = 652
Score = 27.3 bits (59), Expect = 7.2
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Query: 9 RGGGPTSSEQ-----IMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLSECL 63
R GG S Q + TGAL D + G E L QDA + + E L
Sbjct: 202 RRGGEDSDHQSFLIKVDGTGAL-------DVSPHATGHQQEEELKKPDQDAIIQMIVELL 254
Query: 64 KRIGDELDSNMEL 76
KR+GD+ + L
Sbjct: 255 KRVGDQWEEEQSL 267
>gi|150418007 RAN binding protein 2 [Homo sapiens]
Length = 3224
Score = 26.9 bits (58), Expect = 9.4
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 56 TKKLSECLKRIGDELDSN-MELQR----MIAAVDTDSPREVFFRVAAD 98
TK++++C K+ +E N M+LQ+ + A + ++ VFF V AD
Sbjct: 3026 TKEVADCFKKTFEECQQNLMKLQKGHVSLAAELSKETNPVVFFDVCAD 3073
>gi|4506339 peroxisomal biogenesis factor 19 isoform a [Homo
sapiens]
Length = 299
Score = 26.9 bits (58), Expect = 9.4
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 2 DGSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDA-----ST 56
D SG Q R G T+ + + + Q E A+ + ++
Sbjct: 46 DASGPQKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQF 105
Query: 57 KKLSECLKRIGDELDSNME 75
+KLSE R+G ++ S E
Sbjct: 106 QKLSEAAGRVGSDMTSQQE 124
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,694,363
Number of Sequences: 37866
Number of extensions: 278086
Number of successful extensions: 608
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 26
length of query: 179
length of database: 18,247,518
effective HSP length: 96
effective length of query: 83
effective length of database: 14,612,382
effective search space: 1212827706
effective search space used: 1212827706
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.