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Search of human proteins with 239758132
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239758132 PREDICTED: RANBP2-like and GRIP domain containing
8 [Homo sapiens]
(93 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239758132 PREDICTED: RANBP2-like and GRIP domain containing 8... 185 8e-48
gi|169162953 PREDICTED: RANBP2-like and GRIP domain containing 8... 143 3e-35
gi|83267877 RANBP2-like and GRIP domain containing 5 isoform 1 [... 143 3e-35
gi|14149991 RANBP2-like and GRIP domain containing 5 isoform 2 [... 143 3e-35
gi|118197270 RANBP2-like and GRIP domain containing 7 [Homo sapi... 143 3e-35
gi|182765478 RANBP2-like and GRIP domain containing 6 [Homo sapi... 143 3e-35
gi|221307607 RANBP2-like and GRIP domain containing 3 [Homo sapi... 135 9e-33
gi|211059431 RANBP2-like and GRIP domain containing 4 [Homo sapi... 135 9e-33
gi|150418007 RAN binding protein 2 [Homo sapiens] 134 2e-32
gi|157266273 RANBP2-like and GRIP domain containing 1 [Homo sapi... 131 1e-31
gi|55956923 5-hydroxytryptamine (serotonin) receptor 1A [Homo sa... 28 1.6
gi|119703749 hydrocephalus inducing isoform a [Homo sapiens] 28 2.1
gi|46361983 hydrocephalus inducing isoform b [Homo sapiens] 28 2.1
gi|12083581 phosphoinositide-specific phospholipase C beta 1 iso... 27 4.6
gi|33356544 phosphoinositide-specific phospholipase C beta 1 iso... 27 4.6
gi|4504111 growth factor receptor-bound protein 2 isoform 1 [Hom... 26 6.0
gi|45359859 growth factor receptor-bound protein 2 isoform 2 [Ho... 26 6.0
>gi|239758132 PREDICTED: RANBP2-like and GRIP domain containing 8
[Homo sapiens]
Length = 93
Score = 185 bits (469), Expect = 8e-48
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MNPKGHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID 60
MNPKGHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID
Sbjct: 1 MNPKGHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID 60
Query: 61 VQEPELEDLARYDVGKLYVSEEMVSVLILINCP 93
VQEPELEDLARYDVGKLYVSEEMVSVLILINCP
Sbjct: 61 VQEPELEDLARYDVGKLYVSEEMVSVLILINCP 93
>gi|169162953 PREDICTED: RANBP2-like and GRIP domain containing 8
[Homo sapiens]
Length = 1765
Score = 143 bits (360), Expect = 3e-35
Identities = 71/77 (92%), Positives = 74/77 (96%)
Query: 1 MNPKGHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID 60
++ GHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID
Sbjct: 352 LSQSGHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID 411
Query: 61 VQEPELEDLARYDVGKL 77
VQEPELEDLARYDVG +
Sbjct: 412 VQEPELEDLARYDVGAI 428
>gi|83267877 RANBP2-like and GRIP domain containing 5 isoform 1
[Homo sapiens]
Length = 1765
Score = 143 bits (360), Expect = 3e-35
Identities = 71/77 (92%), Positives = 74/77 (96%)
Query: 1 MNPKGHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID 60
++ GHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID
Sbjct: 352 LSQSGHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID 411
Query: 61 VQEPELEDLARYDVGKL 77
VQEPELEDLARYDVG +
Sbjct: 412 VQEPELEDLARYDVGAI 428
>gi|14149991 RANBP2-like and GRIP domain containing 5 isoform 2
[Homo sapiens]
Length = 904
Score = 143 bits (360), Expect = 3e-35
Identities = 71/77 (92%), Positives = 74/77 (96%)
Query: 1 MNPKGHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID 60
++ GHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID
Sbjct: 352 LSQSGHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID 411
Query: 61 VQEPELEDLARYDVGKL 77
VQEPELEDLARYDVG +
Sbjct: 412 VQEPELEDLARYDVGAI 428
>gi|118197270 RANBP2-like and GRIP domain containing 7 [Homo
sapiens]
Length = 904
Score = 143 bits (360), Expect = 3e-35
Identities = 71/77 (92%), Positives = 74/77 (96%)
Query: 1 MNPKGHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID 60
++ GHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID
Sbjct: 352 LSQSGHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID 411
Query: 61 VQEPELEDLARYDVGKL 77
VQEPELEDLARYDVG +
Sbjct: 412 VQEPELEDLARYDVGAI 428
>gi|182765478 RANBP2-like and GRIP domain containing 6 [Homo
sapiens]
Length = 1765
Score = 143 bits (360), Expect = 3e-35
Identities = 71/77 (92%), Positives = 74/77 (96%)
Query: 1 MNPKGHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID 60
++ GHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID
Sbjct: 352 LSQSGHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID 411
Query: 61 VQEPELEDLARYDVGKL 77
VQEPELEDLARYDVG +
Sbjct: 412 VQEPELEDLARYDVGAI 428
>gi|221307607 RANBP2-like and GRIP domain containing 3 [Homo
sapiens]
Length = 1758
Score = 135 bits (339), Expect = 9e-33
Identities = 67/77 (87%), Positives = 71/77 (92%)
Query: 1 MNPKGHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID 60
++ GHMLL+LSRGKQDFLK VVETFANK GQSALYDALFSSQSPKDTSFLGSDDIG ID
Sbjct: 352 LSQSGHMLLNLSRGKQDFLKVVVETFANKSGQSALYDALFSSQSPKDTSFLGSDDIGNID 411
Query: 61 VQEPELEDLARYDVGKL 77
VQEPELEDLARYDVG +
Sbjct: 412 VQEPELEDLARYDVGAI 428
>gi|211059431 RANBP2-like and GRIP domain containing 4 [Homo
sapiens]
Length = 1758
Score = 135 bits (339), Expect = 9e-33
Identities = 67/77 (87%), Positives = 71/77 (92%)
Query: 1 MNPKGHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID 60
++ GHMLL+LSRGKQDFLK VVETFANK GQSALYDALFSSQSPKDTSFLGSDDIG ID
Sbjct: 352 LSQSGHMLLNLSRGKQDFLKVVVETFANKSGQSALYDALFSSQSPKDTSFLGSDDIGNID 411
Query: 61 VQEPELEDLARYDVGKL 77
VQEPELEDLARYDVG +
Sbjct: 412 VQEPELEDLARYDVGAI 428
>gi|150418007 RAN binding protein 2 [Homo sapiens]
Length = 3224
Score = 134 bits (337), Expect = 2e-32
Identities = 65/77 (84%), Positives = 71/77 (92%)
Query: 1 MNPKGHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID 60
++ GHMLL+LSRGKQDFLKE+VETFANK GQSALYDALFSSQSPKDTSFLGSDDIG ID
Sbjct: 351 LSQSGHMLLNLSRGKQDFLKEIVETFANKSGQSALYDALFSSQSPKDTSFLGSDDIGNID 410
Query: 61 VQEPELEDLARYDVGKL 77
V+EPELEDL RYDVG +
Sbjct: 411 VREPELEDLTRYDVGAI 427
>gi|157266273 RANBP2-like and GRIP domain containing 1 [Homo
sapiens]
Length = 1756
Score = 131 bits (329), Expect = 1e-31
Identities = 65/77 (84%), Positives = 70/77 (90%)
Query: 1 MNPKGHMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKID 60
++ GHMLL+LSRGKQDFLKEVVETFANK GQS LY+ALFSSQS KDTSFLGSDDIG ID
Sbjct: 351 LSQSGHMLLNLSRGKQDFLKEVVETFANKSGQSVLYNALFSSQSSKDTSFLGSDDIGNID 410
Query: 61 VQEPELEDLARYDVGKL 77
VQEPELEDLARYDVG +
Sbjct: 411 VQEPELEDLARYDVGAI 427
>gi|55956923 5-hydroxytryptamine (serotonin) receptor 1A [Homo
sapiens]
Length = 422
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 63 EPELEDLARYDVGKLYVSEEMVSVLIL 89
E L+++A Y +G L V++ MVSVL+L
Sbjct: 64 ERSLQNVANYLIGSLAVTDLMVSVLVL 90
>gi|119703749 hydrocephalus inducing isoform a [Homo sapiens]
Length = 5120
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 22 VVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKIDVQEPELEDLARYDVGKLYVSE 81
V+ET +S +Y ++F SQ P L S G + P + D G +YV +
Sbjct: 767 VLETQVTGEHRSTVYISIFGSQDPPLVCHLKSAGEGPVIYVHPN-----QVDFGNIYVLK 821
Query: 82 EMVSVLILIN 91
+ +L L N
Sbjct: 822 DSSRILNLCN 831
>gi|46361983 hydrocephalus inducing isoform b [Homo sapiens]
Length = 1017
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 22 VVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKIDVQEPELEDLARYDVGKLYVSE 81
V+ET +S +Y ++F SQ P L S G + P + D G +YV +
Sbjct: 767 VLETQVTGEHRSTVYISIFGSQDPPLVCHLKSAGEGPVIYVHPN-----QVDFGNIYVLK 821
Query: 82 EMVSVLILIN 91
+ +L L N
Sbjct: 822 DSSRILNLCN 831
>gi|12083581 phosphoinositide-specific phospholipase C beta 1
isoform a [Homo sapiens]
Length = 1216
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 15 KQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSD---DIGKIDVQEPELEDLAR 71
++DF EV F N + D +FS K +L D D + ++P L ++
Sbjct: 204 QEDFTPEVYRVFLNNLCPRPEIDNIFSEFGAKSKPYLTVDQMMDFINLKQRDPRLNEI-- 261
Query: 72 YDVGKLY--VSEEMVSVLI 88
LY + +E V VLI
Sbjct: 262 -----LYPPLKQEQVQVLI 275
>gi|33356544 phosphoinositide-specific phospholipase C beta 1
isoform b [Homo sapiens]
Length = 1173
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 15 KQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSD---DIGKIDVQEPELEDLAR 71
++DF EV F N + D +FS K +L D D + ++P L ++
Sbjct: 204 QEDFTPEVYRVFLNNLCPRPEIDNIFSEFGAKSKPYLTVDQMMDFINLKQRDPRLNEI-- 261
Query: 72 YDVGKLY--VSEEMVSVLI 88
LY + +E V VLI
Sbjct: 262 -----LYPPLKQEQVQVLI 275
>gi|4504111 growth factor receptor-bound protein 2 isoform 1 [Homo
sapiens]
Length = 217
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 6 HMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKIDVQEP 64
H S+SR +Q FL+++ + AL+D F Q + F D I +D +P
Sbjct: 135 HRSTSVSRNQQIFLRDIEQVPQQPTYVQALFD--FDPQEDGELGFRRGDFIHVMDNSDP 191
>gi|45359859 growth factor receptor-bound protein 2 isoform 2 [Homo
sapiens]
Length = 176
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 6 HMLLSLSRGKQDFLKEVVETFANKIGQSALYDALFSSQSPKDTSFLGSDDIGKIDVQEP 64
H S+SR +Q FL+++ + AL+D F Q + F D I +D +P
Sbjct: 94 HRSTSVSRNQQIFLRDIEQVPQQPTYVQALFD--FDPQEDGELGFRRGDFIHVMDNSDP 150
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,020,508
Number of Sequences: 37866
Number of extensions: 101569
Number of successful extensions: 201
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 17
length of query: 93
length of database: 18,247,518
effective HSP length: 64
effective length of query: 29
effective length of database: 15,824,094
effective search space: 458898726
effective search space used: 458898726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.