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Search of human proteins with 239758099
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239758099 PREDICTED: hypothetical protein XP_002346294 [Homo
sapiens]
(75 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239758099 PREDICTED: hypothetical protein XP_002346294 [Homo ... 157 1e-39
gi|169178848 PREDICTED: hypothetical protein [Homo sapiens] 157 1e-39
gi|169215257 PREDICTED: hypothetical protein [Homo sapiens] 149 6e-37
gi|239741273 PREDICTED: hypothetical protein XP_002342153 [Homo ... 149 6e-37
gi|239752891 PREDICTED: hypothetical protein [Homo sapiens] 146 3e-36
gi|169161055 PREDICTED: hypothetical protein [Homo sapiens] 146 3e-36
gi|169161052 PREDICTED: hypothetical protein [Homo sapiens] 146 4e-36
gi|169161059 PREDICTED: hypothetical protein [Homo sapiens] 141 1e-34
gi|169174738 PREDICTED: hypothetical protein [Homo sapiens] 129 4e-31
gi|239743760 PREDICTED: hypothetical protein XP_002342953 [Homo ... 129 4e-31
gi|239747784 PREDICTED: hypothetical protein [Homo sapiens] 125 7e-30
gi|169163288 PREDICTED: hypothetical protein [Homo sapiens] 125 7e-30
gi|239749576 PREDICTED: hypothetical protein XP_002347089 [Homo ... 117 3e-27
gi|20127408 mitochondrial trifunctional protein, alpha subunit p... 27 2.7
gi|122937472 bicaudal C homolog 1 [Homo sapiens] 27 4.6
gi|239748997 PREDICTED: hypothetical protein XP_002346878 [Homo ... 26 6.1
gi|239743019 PREDICTED: hypothetical protein XP_002342720 [Homo ... 26 6.1
gi|188595677 integrin, beta 2 precursor [Homo sapiens] 26 7.9
gi|89191865 integrin, beta 2 precursor [Homo sapiens] 26 7.9
gi|15812180 butyrate response factor 1 [Homo sapiens] 26 7.9
gi|68989263 enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A... 26 7.9
>gi|239758099 PREDICTED: hypothetical protein XP_002346294 [Homo
sapiens]
Length = 75
Score = 157 bits (398), Expect = 1e-39
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
Query: 61 PCRWRQGGSTDKPPA 75
PCRWRQGGSTDKPPA
Sbjct: 61 PCRWRQGGSTDKPPA 75
>gi|169178848 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 157 bits (398), Expect = 1e-39
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
Query: 61 PCRWRQGGSTDKPPA 75
PCRWRQGGSTDKPPA
Sbjct: 61 PCRWRQGGSTDKPPA 75
>gi|169215257 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 149 bits (375), Expect = 6e-37
Identities = 71/75 (94%), Positives = 71/75 (94%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQ A TH
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGGSTDKPPA 75
PCRWRQGGSTD PPA
Sbjct: 61 PCRWRQGGSTDNPPA 75
>gi|239741273 PREDICTED: hypothetical protein XP_002342153 [Homo
sapiens]
Length = 75
Score = 149 bits (375), Expect = 6e-37
Identities = 71/75 (94%), Positives = 71/75 (94%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQ A TH
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGGSTDKPPA 75
PCRWRQGGSTD PPA
Sbjct: 61 PCRWRQGGSTDNPPA 75
>gi|239752891 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 146 bits (369), Expect = 3e-36
Identities = 70/75 (93%), Positives = 70/75 (93%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQ A TH
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGGSTDKPPA 75
PCRWRQG STD PPA
Sbjct: 61 PCRWRQGASTDNPPA 75
>gi|169161055 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 146 bits (369), Expect = 3e-36
Identities = 70/75 (93%), Positives = 70/75 (93%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQ A TH
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGGSTDKPPA 75
PCRWRQG STD PPA
Sbjct: 61 PCRWRQGASTDNPPA 75
>gi|169161052 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 146 bits (368), Expect = 4e-36
Identities = 69/75 (92%), Positives = 71/75 (94%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
MVVLGM+TEEGHCIMLRGLAPSLGGTQVICKV+GLPSSIGFNTSSHLLFPATLQ A TH
Sbjct: 1 MVVLGMRTEEGHCIMLRGLAPSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGGSTDKPPA 75
PCRWRQGGSTD PPA
Sbjct: 61 PCRWRQGGSTDNPPA 75
>gi|169161059 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 141 bits (356), Expect = 1e-34
Identities = 69/75 (92%), Positives = 69/75 (92%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
MVVLGMQTEEGHCIMLRGLA SLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQ A TH
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGGSTDKPPA 75
PCRWRQGGSTD PA
Sbjct: 61 PCRWRQGGSTDNLPA 75
>gi|169174738 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 129 bits (325), Expect = 4e-31
Identities = 63/75 (84%), Positives = 64/75 (85%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
MVVLGMQ EEGH RGLAP LG TQV+CKVVGLPS GFNTSSHLLFPATLQ ALTHL
Sbjct: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
Query: 61 PCRWRQGGSTDKPPA 75
PCRWRQG STDKPPA
Sbjct: 61 PCRWRQGDSTDKPPA 75
>gi|239743760 PREDICTED: hypothetical protein XP_002342953 [Homo
sapiens]
Length = 75
Score = 129 bits (325), Expect = 4e-31
Identities = 63/75 (84%), Positives = 64/75 (85%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
MVVLGMQ EEGH RGLAP LG TQV+CKVVGLPS GFNTSSHLLFPATLQ ALTHL
Sbjct: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
Query: 61 PCRWRQGGSTDKPPA 75
PCRWRQG STDKPPA
Sbjct: 61 PCRWRQGDSTDKPPA 75
>gi|239747784 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 125 bits (314), Expect = 7e-30
Identities = 62/75 (82%), Positives = 64/75 (85%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
MVVLGMQTEEGH RGLAP LG TQV+CKVVG PSS GF+TSSHLLFPATLQ ALTHL
Sbjct: 1 MVVLGMQTEEGHQAQQRGLAPPLGETQVMCKVVGRPSSAGFDTSSHLLFPATLQGALTHL 60
Query: 61 PCRWRQGGSTDKPPA 75
CRWRQG STDKPPA
Sbjct: 61 LCRWRQGDSTDKPPA 75
>gi|169163288 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 125 bits (314), Expect = 7e-30
Identities = 62/75 (82%), Positives = 64/75 (85%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
MVVLGMQTEEGH RGLAP LG TQV+CKVVG PSS GF+TSSHLLFPATLQ ALTHL
Sbjct: 1 MVVLGMQTEEGHQAQQRGLAPPLGETQVMCKVVGRPSSAGFDTSSHLLFPATLQGALTHL 60
Query: 61 PCRWRQGGSTDKPPA 75
CRWRQG STDKPPA
Sbjct: 61 LCRWRQGDSTDKPPA 75
>gi|239749576 PREDICTED: hypothetical protein XP_002347089 [Homo
sapiens]
Length = 375
Score = 117 bits (292), Expect = 3e-27
Identities = 59/74 (79%), Positives = 61/74 (82%)
Query: 2 VVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHLP 61
VVLGMQTEEG RGLAP LGGTQV+CKV GLPSS FNTSSH+LFP TLQ ALTHLP
Sbjct: 302 VVLGMQTEEGCRAEQRGLAPFLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTLQGALTHLP 361
Query: 62 CRWRQGGSTDKPPA 75
RWRQG STDKPPA
Sbjct: 362 YRWRQGDSTDKPPA 375
>gi|20127408 mitochondrial trifunctional protein, alpha subunit
precursor [Homo sapiens]
Length = 763
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 15 MLRGLAPSLGGTQVICKVVGLPSSI 39
+L G P GGTQ + K+VG+P+++
Sbjct: 174 VLLGALPGAGGTQRLPKMVGVPAAL 198
>gi|122937472 bicaudal C homolog 1 [Homo sapiens]
Length = 974
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 37 SSIGFNTSSHLLFPATLQVALTHL 60
S+ GF+ HL+ P+T Q LT++
Sbjct: 507 SATGFSAIPHLMIPSTAQATLTNI 530
>gi|239748997 PREDICTED: hypothetical protein XP_002346878 [Homo
sapiens]
Length = 297
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 5 GMQTEEGHCIMLRGLAPSLGGTQV 28
G+Q EEG C RG A GG Q+
Sbjct: 215 GLQVEEGACRWRRGAADGGGGLQM 238
>gi|239743019 PREDICTED: hypothetical protein XP_002342720 [Homo
sapiens]
Length = 487
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 5 GMQTEEGHCIMLRGLAPSLGGTQV 28
G+Q EEG C RG A GG Q+
Sbjct: 405 GLQVEEGACRWRRGAADGGGGLQM 428
>gi|188595677 integrin, beta 2 precursor [Homo sapiens]
Length = 769
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 7 QTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPAT 52
QTE G ++ L GG + +V P IG+ + LL AT
Sbjct: 218 QTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRNVTRLLVFAT 263
>gi|89191865 integrin, beta 2 precursor [Homo sapiens]
Length = 769
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 7 QTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPAT 52
QTE G ++ L GG + +V P IG+ + LL AT
Sbjct: 218 QTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRNVTRLLVFAT 263
>gi|15812180 butyrate response factor 1 [Homo sapiens]
Length = 338
Score = 25.8 bits (55), Expect = 7.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 15 MLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPAT 52
ML APS GG + K VG P+ GF + P++
Sbjct: 23 MLNYSAPSAGGCLLDRKAVGTPAGGGFPRRHSVTLPSS 60
>gi|68989263 enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A
dehydrogenase [Homo sapiens]
Length = 723
Score = 25.8 bits (55), Expect = 7.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 18 GLAPSLGGTQVICKVVGLPSSIGFNTS 44
GL P GTQ++ ++ G+P+++ TS
Sbjct: 128 GLLPGARGTQLLPRLTGVPAALDLITS 154
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,427,051
Number of Sequences: 37866
Number of extensions: 131196
Number of successful extensions: 212
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 21
length of query: 75
length of database: 18,247,518
effective HSP length: 47
effective length of query: 28
effective length of database: 16,467,816
effective search space: 461098848
effective search space used: 461098848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.