Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239758079
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239758079 PREDICTED: hypothetical protein [Homo sapiens]
(127 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239758079 PREDICTED: hypothetical protein [Homo sapiens] 269 5e-73
gi|239758005 PREDICTED: hypothetical protein XP_002346265 [Homo ... 244 1e-65
gi|239758003 PREDICTED: hypothetical protein XP_002346264 [Homo ... 217 2e-57
gi|239758025 PREDICTED: hypothetical protein [Homo sapiens] 210 3e-55
gi|239758019 PREDICTED: hypothetical protein [Homo sapiens] 154 2e-38
gi|239755284 PREDICTED: hypothetical protein [Homo sapiens] 125 1e-29
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens] 68 2e-12
gi|239755286 PREDICTED: similar to hCG1742442 [Homo sapiens] 55 1e-08
gi|21071060 SWI/SNF-related matrix-associated actin-dependent re... 29 1.1
gi|187761314 SWI/SNF-related matrix-associated actin-dependent r... 29 1.1
gi|22726201 inositol polyphosphate multikinase [Homo sapiens] 28 2.5
gi|16306568 poly(A) polymerase gamma [Homo sapiens] 27 4.2
gi|18093112 ABT1-associated protein [Homo sapiens] 27 5.5
gi|213688415 coiled-coil domain containing 66 isoform 1 [Homo sa... 26 7.2
gi|213688413 coiled-coil domain containing 66 isoform 2 [Homo sa... 26 7.2
gi|21955154 NLR family, pyrin domain containing 12 isoform 2 [Ho... 26 7.2
gi|239747192 PREDICTED: similar to hCG2038988 [Homo sapiens] 26 9.4
gi|11141889 WW45 protein [Homo sapiens] 26 9.4
gi|4502085 pancreatic amylase alpha 2A precursor [Homo sapiens] 26 9.4
gi|4502901 clathrin, light polypeptide isoform a [Homo sapiens] 26 9.4
gi|55749769 CWC22 spliceosome-associated protein homolog [Homo s... 26 9.4
>gi|239758079 PREDICTED: hypothetical protein [Homo sapiens]
Length = 127
Score = 269 bits (687), Expect = 5e-73
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MESSSNELNAIIEWSRMESSSNGKEWNHRIESNGIIIEWNRMVSTPNGKKRNYRMESKRI 60
MESSSNELNAIIEWSRMESSSNGKEWNHRIESNGIIIEWNRMVSTPNGKKRNYRMESKRI
Sbjct: 1 MESSSNELNAIIEWSRMESSSNGKEWNHRIESNGIIIEWNRMVSTPNGKKRNYRMESKRI 60
Query: 61 FERTRMESSNGMEWNNPWTRMQSSSNGIEWNHRMDSNGIIIERNRMESSSDGNEWNHHRM 120
FERTRMESSNGMEWNNPWTRMQSSSNGIEWNHRMDSNGIIIERNRMESSSDGNEWNHHRM
Sbjct: 61 FERTRMESSNGMEWNNPWTRMQSSSNGIEWNHRMDSNGIIIERNRMESSSDGNEWNHHRM 120
Query: 121 EMKGVII 127
EMKGVII
Sbjct: 121 EMKGVII 127
>gi|239758005 PREDICTED: hypothetical protein XP_002346265 [Homo
sapiens]
Length = 127
Score = 244 bits (623), Expect = 1e-65
Identities = 115/127 (90%), Positives = 120/127 (94%)
Query: 1 MESSSNELNAIIEWSRMESSSNGKEWNHRIESNGIIIEWNRMVSTPNGKKRNYRMESKRI 60
MESSSNELNA+IEWSRMESSSNG EWNHRIESNGIIIEWNRM ST NGKKRNYRMESKRI
Sbjct: 1 MESSSNELNAVIEWSRMESSSNGMEWNHRIESNGIIIEWNRMESTSNGKKRNYRMESKRI 60
Query: 61 FERTRMESSNGMEWNNPWTRMQSSSNGIEWNHRMDSNGIIIERNRMESSSDGNEWNHHRM 120
E TRMESSNGMEWNNPWT+MQSSS+ IEWNHRMDSNGIIIERNRME SS+GNEWNHH+M
Sbjct: 61 IEWTRMESSNGMEWNNPWTQMQSSSHSIEWNHRMDSNGIIIERNRMEPSSNGNEWNHHQM 120
Query: 121 EMKGVII 127
EMKGVII
Sbjct: 121 EMKGVII 127
>gi|239758003 PREDICTED: hypothetical protein XP_002346264 [Homo
sapiens]
Length = 135
Score = 217 bits (552), Expect = 2e-57
Identities = 107/127 (84%), Positives = 112/127 (88%)
Query: 1 MESSSNELNAIIEWSRMESSSNGKEWNHRIESNGIIIEWNRMVSTPNGKKRNYRMESKRI 60
MESSSNELNAIIEWSRMESSSNGKEWNHRIESNGI I+W RM ST NG KRNYRMESKR
Sbjct: 1 MESSSNELNAIIEWSRMESSSNGKEWNHRIESNGINIKWTRMESTSNGIKRNYRMESKRS 60
Query: 61 FERTRMESSNGMEWNNPWTRMQSSSNGIEWNHRMDSNGIIIERNRMESSSDGNEWNHHRM 120
E TRMESSNGMEWNNP TRMQSSS IEWNHRMDSNGII ERNRMESSS+GNE +HH M
Sbjct: 61 IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESSSNGNERSHHLM 120
Query: 121 EMKGVII 127
E+ G+II
Sbjct: 121 ELHGIII 127
Score = 45.1 bits (105), Expect = 2e-05
Identities = 23/36 (63%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
Query: 11 IIEWSRMESSSNGKEWNHRI-ESNGIIIEWNRMVST 45
I E +RMESSSNG E +H + E +GIII+WNRMVS+
Sbjct: 100 ITERNRMESSSNGNERSHHLMELHGIIIKWNRMVSS 135
>gi|239758025 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 210 bits (534), Expect = 3e-55
Identities = 103/115 (89%), Positives = 104/115 (90%)
Query: 1 MESSSNELNAIIEWSRMESSSNGKEWNHRIESNGIIIEWNRMVSTPNGKKRNYRMESKRI 60
MESSSNELNAIIEWSRMESS+NGKEWNHRIESNGI IEW RM ST NG KRNYRMESKRI
Sbjct: 1 MESSSNELNAIIEWSRMESSANGKEWNHRIESNGINIEWTRMESTSNGIKRNYRMESKRI 60
Query: 61 FERTRMESSNGMEWNNPWTRMQSSSNGIEWNHRMDSNGIIIERNRMESSSDGNEW 115
E TRMESSNGMEWNNP TRMQSSS IEWNHRMDSNGIIIERNRMESS DGNEW
Sbjct: 61 IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIIIERNRMESSLDGNEW 115
Score = 63.5 bits (153), Expect = 4e-11
Identities = 33/59 (55%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Query: 68 SSNGMEWNNPWTRMQSSSNGIEWNHRMDSNGIIIERNRMESSSDGNEWNHHRMEMKGVI 126
SSN + W+RM+SS+NG EWNHR++SNGI IE RMES+S+G + N +RME K +I
Sbjct: 4 SSNELNAIIEWSRMESSANGKEWNHRIESNGINIEWTRMESTSNGIKRN-YRMESKRII 61
>gi|239758019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 86
Score = 154 bits (389), Expect = 2e-38
Identities = 76/86 (88%), Positives = 76/86 (88%)
Query: 42 MVSTPNGKKRNYRMESKRIFERTRMESSNGMEWNNPWTRMQSSSNGIEWNHRMDSNGIII 101
M ST NG KRNYRMESKRI E TRMESSNGMEWNN TR QSSS IEWNHRMDSNGIII
Sbjct: 1 MESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNTRTRKQSSSYRIEWNHRMDSNGIII 60
Query: 102 ERNRMESSSDGNEWNHHRMEMKGVII 127
ERNRMESSSDGNEWNHHRMEMKGVII
Sbjct: 61 ERNRMESSSDGNEWNHHRMEMKGVII 86
Score = 57.0 bits (136), Expect = 4e-09
Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 24/84 (28%)
Query: 1 MESSSN--------ELNAIIEWSRMESSSNGK---------------EWNHRIESNGIII 37
MES+SN E IIEW+RMESS+ + EWNHR++SNGIII
Sbjct: 1 MESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNTRTRKQSSSYRIEWNHRMDSNGIII 60
Query: 38 EWNRMVSTPNGKKRN-YRMESKRI 60
E NRM S+ +G + N +RME K +
Sbjct: 61 ERNRMESSSDGNEWNHHRMEMKGV 84
>gi|239755284 PREDICTED: hypothetical protein [Homo sapiens]
Length = 62
Score = 125 bits (313), Expect = 1e-29
Identities = 58/62 (93%), Positives = 59/62 (95%)
Query: 66 MESSNGMEWNNPWTRMQSSSNGIEWNHRMDSNGIIIERNRMESSSDGNEWNHHRMEMKGV 125
MESSNGMEWNNP TRMQSS N IEWNHRMDSNGIIIERNRMESSS+GNEWNHHRMEMKGV
Sbjct: 1 MESSNGMEWNNPCTRMQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEWNHHRMEMKGV 60
Query: 126 II 127
II
Sbjct: 61 II 62
Score = 57.4 bits (137), Expect = 3e-09
Identities = 34/65 (52%), Positives = 44/65 (67%), Gaps = 10/65 (15%)
Query: 1 MESSSNELNAIIEWS----RMESSSNGKEWNHRIESNGIIIEWNRMVSTPNGKKRN-YRM 55
MESS+ +EW+ RM+SS N EWNHR++SNGIIIE NRM S+ NG + N +RM
Sbjct: 1 MESSNG-----MEWNNPCTRMQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEWNHHRM 55
Query: 56 ESKRI 60
E K +
Sbjct: 56 EMKGV 60
>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 465
Score = 68.2 bits (165), Expect = 2e-12
Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 4/60 (6%)
Query: 72 MEWNN---PWTRMQSSSNGIEWNH-RMDSNGIIIERNRMESSSDGNEWNHHRMEMKGVII 127
MEWN W RM+ SSNGI +H RM+ NG+IIE NR SS +G EW+H RM+ KG+II
Sbjct: 405 MEWNGIIIEWNRMELSSNGINRDHHRMEPNGVIIEWNRKASSCNGIEWHHQRMDSKGIII 464
Score = 60.8 bits (146), Expect = 3e-10
Identities = 38/76 (50%), Positives = 46/76 (60%), Gaps = 16/76 (21%)
Query: 29 RIESNGIIIEWNRMVSTPNGKKR-NYRMESKRIFERTRMESSNGMEWNNPWTRMQSSSNG 87
++E NGIIIEWNRM + NG R ++RME + +EWN R SS NG
Sbjct: 404 KMEWNGIIIEWNRMELSSNGINRDHHRMEPNGVI----------IEWN----RKASSCNG 449
Query: 88 IEWNH-RMDSNGIIIE 102
IEW+H RMDS GIIIE
Sbjct: 450 IEWHHQRMDSKGIIIE 465
Score = 46.2 bits (108), Expect = 7e-06
Identities = 23/35 (65%), Positives = 27/35 (77%)
Query: 93 RMDSNGIIIERNRMESSSDGNEWNHHRMEMKGVII 127
+M+ NGIIIE NRME SS+G +HHRME GVII
Sbjct: 404 KMEWNGIIIEWNRMELSSNGINRDHHRMEPNGVII 438
>gi|239755286 PREDICTED: similar to hCG1742442 [Homo sapiens]
Length = 296
Score = 55.1 bits (131), Expect = 1e-08
Identities = 27/40 (67%), Positives = 32/40 (80%), Gaps = 3/40 (7%)
Query: 88 IEWN-HRMDSNGIIIERNRMESSSDGNEWNHHRMEMKGVI 126
IEWN HRM+SN III+ NRMES+ G EWNHH+ME G+I
Sbjct: 7 IEWNRHRMESNAIIIKWNRMESN--GVEWNHHQMESSGII 44
Score = 47.0 bits (110), Expect = 4e-06
Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 14/67 (20%)
Query: 7 ELNAIIEWSRMESSSNGKEWNHRIESNGIIIEWNRMVSTPNGKKRN-YRMESKRIFERTR 65
E NAIIEW+R HR+ESN III+WNRM S NG + N ++MES I E R
Sbjct: 2 ESNAIIEWNR-----------HRMESNAIIIKWNRMES--NGVEWNHHQMESSGIIEWIR 48
Query: 66 MESSNGM 72
+ M
Sbjct: 49 VSVQTAM 55
Score = 38.9 bits (89), Expect = 0.001
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 29/72 (40%)
Query: 30 IESNGIIIEWNRMVSTPNGKKRNYRMESKRIFERTRMESSNGMEWNNPWTRMQSSSNGIE 89
+ESN II EWNR +RMES I + W RM+S NG+E
Sbjct: 1 MESNAII-EWNR-----------HRMESNAIIIK--------------WNRMES--NGVE 32
Query: 90 WN-HRMDSNGII 100
WN H+M+S+GII
Sbjct: 33 WNHHQMESSGII 44
Score = 26.2 bits (56), Expect = 7.2
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 13/34 (38%)
Query: 94 MDSNGIIIERNRMESSSDGNEWNHHRMEMKGVII 127
M+SN II EWN HRME +II
Sbjct: 1 MESNAII-------------EWNRHRMESNAIII 21
>gi|21071060 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a-like 1 [Homo sapiens]
Length = 954
Score = 28.9 bits (63), Expect = 1.1
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 36 IIEWNRMVSTPNGKKRNYRMESKRIFERTRMESSNGMEWNNPWTRMQS-SSNGIEWNHRM 94
+ E R N +K R K + E+ + SS NP+ Q S N + +
Sbjct: 5 LTEEQRKKIEENRQKALARRAEKLLAEQHQRTSSGTSIAGNPFQAKQGPSQNFPRESCKP 64
Query: 95 DSNGIIIERNRMESSSDGNEWNH--HRMEMKGV 125
S+G+I ++ + SSS+ ++ H H + KG+
Sbjct: 65 VSHGVIFKQQNLSSSSNADQRPHDSHSFQAKGI 97
>gi|187761314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a-like 1 [Homo sapiens]
Length = 954
Score = 28.9 bits (63), Expect = 1.1
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 36 IIEWNRMVSTPNGKKRNYRMESKRIFERTRMESSNGMEWNNPWTRMQS-SSNGIEWNHRM 94
+ E R N +K R K + E+ + SS NP+ Q S N + +
Sbjct: 5 LTEEQRKKIEENRQKALARRAEKLLAEQHQRTSSGTSIAGNPFQAKQGPSQNFPRESCKP 64
Query: 95 DSNGIIIERNRMESSSDGNEWNH--HRMEMKGV 125
S+G+I ++ + SSS+ ++ H H + KG+
Sbjct: 65 VSHGVIFKQQNLSSSSNADQRPHDSHSFQAKGI 97
>gi|22726201 inositol polyphosphate multikinase [Homo sapiens]
Length = 416
Score = 27.7 bits (60), Expect = 2.5
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 3 SSSNELNAIIEWSRMESSSNGKEWNHRIESNGIIIEWNRMVSTPNGKKRNYRMESKRIFE 62
+S ++ I++W N K+ N S + E + S P K N R +++
Sbjct: 228 ASIQKIEKILQWFE-----NQKQLNFYASSLLFVYEGS---SQPTTTKLNDRTLAEKFLS 279
Query: 63 RTRMESSNGMEWNNPWTRMQSSSNG 87
+ ++ + +E+NN + + S++NG
Sbjct: 280 KGQLSDTEVLEYNNNFHVLSSTANG 304
>gi|16306568 poly(A) polymerase gamma [Homo sapiens]
Length = 736
Score = 26.9 bits (58), Expect = 4.2
Identities = 22/105 (20%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 5 SNELNAIIEWSRMESSS-NGKEWNHRIESNGIIIEWNRMVSTPNGKKRNYRMESKRI-FE 62
+N +N + E ++E++ K+ +H + + I++ + S + + + ++SKR+ +
Sbjct: 470 ANNINMLKEGMKIEATHVKKKQLHHYLPAE--ILQKKKKQSLSDVNRSSGGLQSKRLSLD 527
Query: 63 RTRMESS----NGMEWNNPWTRMQSSSNGIEWNHRMDSNGIIIER 103
+ ++SS NG +N+P ++ S S G + + +I+E+
Sbjct: 528 SSCLDSSRDTDNGTPFNSPASKSDSPSVGETERNSAEPAAVIVEK 572
>gi|18093112 ABT1-associated protein [Homo sapiens]
Length = 851
Score = 26.6 bits (57), Expect = 5.5
Identities = 16/87 (18%), Positives = 35/87 (40%)
Query: 2 ESSSNELNAIIEWSRMESSSNGKEWNHRIESNGIIIEWNRMVSTPNGKKRNYRMESKRIF 61
+ N++ I+W S + +++E + W + + KKR R +
Sbjct: 595 KGKENDMEMEIKWVPGLKESAEEMVKNKLEGKDKLTPWEQFLEKKKEKKRLKRKQKALAE 654
Query: 62 ERTRMESSNGMEWNNPWTRMQSSSNGI 88
E + E + ++ N+P+ + GI
Sbjct: 655 EASEEELPSDVDLNDPYFAEEVKQIGI 681
>gi|213688415 coiled-coil domain containing 66 isoform 1 [Homo
sapiens]
Length = 948
Score = 26.2 bits (56), Expect = 7.2
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 44 STPNGKKRNYRMESKRIFERTRMESSNGMEWNNPWTRMQSSSNGIEW 90
S+ KK +R E + E +WN+PW + S S+ I W
Sbjct: 258 SSLEAKKAQWRKELDEQVALKKKEKEVSEKWNDPWKK--SESDKIIW 302
>gi|213688413 coiled-coil domain containing 66 isoform 2 [Homo
sapiens]
Length = 914
Score = 26.2 bits (56), Expect = 7.2
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 44 STPNGKKRNYRMESKRIFERTRMESSNGMEWNNPWTRMQSSSNGIEW 90
S+ KK +R E + E +WN+PW + S S+ I W
Sbjct: 224 SSLEAKKAQWRKELDEQVALKKKEKEVSEKWNDPWKK--SESDKIIW 268
>gi|21955154 NLR family, pyrin domain containing 12 isoform 2 [Homo
sapiens]
Length = 1061
Score = 26.2 bits (56), Expect = 7.2
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 46 PNGKKRNYRMESKRIFERTRMESSNGMEWNNPWTRMQSSSNGI 88
PN K +N R++ RI + S + N TRM S NG+
Sbjct: 740 PNCKLQNLRLKRCRISSSACEDLSAALIANKNLTRMDLSGNGV 782
>gi|239747192 PREDICTED: similar to hCG2038988 [Homo sapiens]
Length = 141
Score = 25.8 bits (55), Expect = 9.4
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 1 MESSSNELNAI--IEWSRMESSSNGKEWNHRIESNGIIIEWNRMVSTPNGKKRN 52
+++S+ E A ++W+ E+ S G+EWN R NG + + + + G R+
Sbjct: 29 LDTSTTEATARRRLKWAAGETRS-GREWNSRQLINGTVQQEGGLAAFSQGSPRS 81
>gi|11141889 WW45 protein [Homo sapiens]
Length = 383
Score = 25.8 bits (55), Expect = 9.4
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 74 WNNPWTR------MQSSSNGIEWNHRMDSNGIIIERNRMESSSDGNEWNHH 118
W+ WT + ++N W+H ++ G+ R+ESS G + H
Sbjct: 205 WSVDWTMRGRKYYIDHNTNTTHWSHPLEREGLPPGWERVESSEFGTYYVDH 255
Score = 25.8 bits (55), Expect = 9.4
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 17 MESSSNGKEWNHRIESNGIIIEWNRMVSTPNG--------KKRNYR 54
++ ++N W+H +E G+ W R+ S+ G KK YR
Sbjct: 218 IDHNTNTTHWSHPLEREGLPPGWERVESSEFGTYYVDHTNKKAQYR 263
>gi|4502085 pancreatic amylase alpha 2A precursor [Homo sapiens]
Length = 511
Score = 25.8 bits (55), Expect = 9.4
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 78 WTRMQSSSNGI-EWNHRMDSNGIIIERNRMESSSDGNEW--NHHRMEMKGVII 127
W R + N + +W ++NG+I E ++ GN+W H +++ ++I
Sbjct: 359 WPRQFQNGNDVNDWVGPPNNNGVIKEVTINPDTTCGNDWVCEHRWRQIRNMVI 411
>gi|4502901 clathrin, light polypeptide isoform a [Homo sapiens]
Length = 211
Score = 25.8 bits (55), Expect = 9.4
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 24 KEWNHRIESNGIIIEWNRMVSTPNGKKRNYRMESKRIFERTRMESSNGMEW 74
+EW + + + + EWN+ S K + S+ F + E + G EW
Sbjct: 126 QEWREKAKKD--LEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEW 174
>gi|55749769 CWC22 spliceosome-associated protein homolog [Homo
sapiens]
Length = 908
Score = 25.8 bits (55), Expect = 9.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 54 RMESKRIFERTRMESSNGMEWNNPWTRMQSSSN 86
R E +R E+ R ++S+G W +P T+ S +
Sbjct: 757 RTERERRSEKHRDQNSSGSNWRDPITKYTSDKD 789
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.124 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,556,208
Number of Sequences: 37866
Number of extensions: 160180
Number of successful extensions: 414
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 36
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.