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Search of human proteins with 239757962
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757962 PREDICTED: hypothetical protein [Homo sapiens]
(136 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757962 PREDICTED: hypothetical protein [Homo sapiens] 281 9e-77
gi|14249394 glyoxalase domain containing 1 [Homo sapiens] 30 0.46
gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens] 28 2.3
gi|21361699 sphingosine kinase 2 [Homo sapiens] 28 3.0
gi|169216977 PREDICTED: melanoma antigen family B, 17 [Homo sapi... 28 3.0
gi|169216191 PREDICTED: melanoma antigen family B, 17 [Homo sapi... 28 3.0
gi|169216802 PREDICTED: melanoma antigen family B, 17 [Homo sapi... 28 3.0
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 28 3.0
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 28 3.0
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 28 3.0
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 28 3.0
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 28 3.0
gi|32698688 citron [Homo sapiens] 27 3.9
gi|7657419 opticin precursor [Homo sapiens] 27 3.9
gi|109148522 insulin- insulin-like growth factor 2 [Homo sapiens] 27 3.9
gi|4557595 forkhead box F2 [Homo sapiens] 27 6.7
gi|148839294 Ca2+-dependent activator protein for secretion 2 is... 26 8.8
gi|148839284 Ca2+-dependent activator protein for secretion 2 is... 26 8.8
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 26 8.8
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 26 8.8
gi|32699050 hypothetical protein LOC348110 [Homo sapiens] 26 8.8
>gi|239757962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 281 bits (720), Expect = 9e-77
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MTSLSWSRSDCTYPQFLDYNPRIPNEIIVTATPSCSRSLAAYTELQGYCSQNPRKELAMS 60
MTSLSWSRSDCTYPQFLDYNPRIPNEIIVTATPSCSRSLAAYTELQGYCSQNPRKELAMS
Sbjct: 1 MTSLSWSRSDCTYPQFLDYNPRIPNEIIVTATPSCSRSLAAYTELQGYCSQNPRKELAMS 60
Query: 61 LPFSGGGLATTAEEAQKRRWGSSLTCSMMAATFPGAEVPATHFPESGVTREGHTLYSRRG 120
LPFSGGGLATTAEEAQKRRWGSSLTCSMMAATFPGAEVPATHFPESGVTREGHTLYSRRG
Sbjct: 61 LPFSGGGLATTAEEAQKRRWGSSLTCSMMAATFPGAEVPATHFPESGVTREGHTLYSRRG 120
Query: 121 SVVDYMKRLTHTSQNV 136
SVVDYMKRLTHTSQNV
Sbjct: 121 SVVDYMKRLTHTSQNV 136
>gi|14249394 glyoxalase domain containing 1 [Homo sapiens]
Length = 371
Score = 30.4 bits (67), Expect = 0.46
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 25 NEIIVTATPSCSRSLAA-YTELQGYC------SQNPRKELAMSLPFSGGGLATTAEEAQK 77
+ + + TP S +L + + G+C ++P L M+ F GGL TA +AQ
Sbjct: 162 DHLTLACTPGSSPTLLRWFHDCLGFCHLPLSPGEDPELGLEMTAGFGLGGLRLTALQAQP 221
Query: 78 RRWGSSLTCSMMAATFPGA 96
GS + ++A + PGA
Sbjct: 222 ---GSIVPTLVLAESLPGA 237
>gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens]
Length = 1352
Score = 28.1 bits (61), Expect = 2.3
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 20 NPRIPNEIIVTATPSCSRSLAAYTELQG--YCSQNPRKELAMSLPFSGGGLATTAEEAQK 77
+P P + V+ PS SRS A + + S P + S P S +++ + + QK
Sbjct: 1057 SPSSPLPVKVSLKPSRSRSKADSSSRGSGRHSSPAPAQPKKESSPKSQDSVSSPSPQKQK 1116
Query: 78 RRWGSSLTCSMMAATFPGAEVPATHFP-ESGVTREGHTLYSRRGS 121
S+LT + + + A PAT P G +R SR GS
Sbjct: 1117 S--ASALTYTASSTSAKKASGPATRSPFPPGKSRTSDHSLSREGS 1159
>gi|21361699 sphingosine kinase 2 [Homo sapiens]
Length = 654
Score = 27.7 bits (60), Expect = 3.0
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 63 FSGGGLATTAEE-AQKRRWGSSLTCSMMAATFPG 95
F G AT E A+ +RW ++LTC + PG
Sbjct: 135 FRADGAATYEENRAEAQRWATALTCLLRGLPLPG 168
>gi|169216977 PREDICTED: melanoma antigen family B, 17 [Homo
sapiens]
Length = 457
Score = 27.7 bits (60), Expect = 3.0
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 33 PSCSRSLAAYTELQGYCSQNPRKELAMSLPFSG---GGLATTAEEAQKRRWGSSLTCSMM 89
PSC L+ +G S+ +E GG TA E +K SS C
Sbjct: 111 PSCLLPLSTVIMPRGQASKRRAREKRRQARGEDQCLGGAQATAAEKEKLPSSSSPACQSP 170
Query: 90 AATFPGAEVP 99
+FP A +P
Sbjct: 171 PQSFPNAGIP 180
>gi|169216191 PREDICTED: melanoma antigen family B, 17 [Homo
sapiens]
Length = 457
Score = 27.7 bits (60), Expect = 3.0
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 33 PSCSRSLAAYTELQGYCSQNPRKELAMSLPFSG---GGLATTAEEAQKRRWGSSLTCSMM 89
PSC L+ +G S+ +E GG TA E +K SS C
Sbjct: 111 PSCLLPLSTVIMPRGQASKRRAREKRRQARGEDQCLGGAQATAAEKEKLPSSSSPACQSP 170
Query: 90 AATFPGAEVP 99
+FP A +P
Sbjct: 171 PQSFPNAGIP 180
>gi|169216802 PREDICTED: melanoma antigen family B, 17 [Homo
sapiens]
Length = 457
Score = 27.7 bits (60), Expect = 3.0
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 33 PSCSRSLAAYTELQGYCSQNPRKELAMSLPFSG---GGLATTAEEAQKRRWGSSLTCSMM 89
PSC L+ +G S+ +E GG TA E +K SS C
Sbjct: 111 PSCLLPLSTVIMPRGQASKRRAREKRRQARGEDQCLGGAQATAAEKEKLPSSSSPACQSP 170
Query: 90 AATFPGAEVP 99
+FP A +P
Sbjct: 171 PQSFPNAGIP 180
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 27.7 bits (60), Expect = 3.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 31 ATPSCSRSLAAYTELQGYCSQNPRKELAMSLPFSGGGLATTAEEAQKRR 79
++PS S +LAA + G P++ M P +GG A + QK R
Sbjct: 1151 SSPSVSSTLAAKDDPDGKQEAKPQQAAGMLSPKTGGKEAASGTTPQKSR 1199
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 27.7 bits (60), Expect = 3.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 31 ATPSCSRSLAAYTELQGYCSQNPRKELAMSLPFSGGGLATTAEEAQKRR 79
++PS S +LAA + G P++ M P +GG A + QK R
Sbjct: 1190 SSPSVSSTLAAKDDPDGKQEAKPQQAAGMLSPKTGGKEAASGTTPQKSR 1238
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 27.7 bits (60), Expect = 3.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 31 ATPSCSRSLAAYTELQGYCSQNPRKELAMSLPFSGGGLATTAEEAQKRR 79
++PS S +LAA + G P++ M P +GG A + QK R
Sbjct: 1227 SSPSVSSTLAAKDDPDGKQEAKPQQAAGMLSPKTGGKEAASGTTPQKSR 1275
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b [Homo
sapiens]
Length = 1411
Score = 27.7 bits (60), Expect = 3.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 31 ATPSCSRSLAAYTELQGYCSQNPRKELAMSLPFSGGGLATTAEEAQKRR 79
++PS S +LAA + G P++ M P +GG A + QK R
Sbjct: 1150 SSPSVSSTLAAKDDPDGKQEAKPQQAAGMLSPKTGGKEAASGTTPQKSR 1198
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a [Homo
sapiens]
Length = 1450
Score = 27.7 bits (60), Expect = 3.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 31 ATPSCSRSLAAYTELQGYCSQNPRKELAMSLPFSGGGLATTAEEAQKRR 79
++PS S +LAA + G P++ M P +GG A + QK R
Sbjct: 1189 SSPSVSSTLAAKDDPDGKQEAKPQQAAGMLSPKTGGKEAASGTTPQKSR 1237
>gi|32698688 citron [Homo sapiens]
Length = 2027
Score = 27.3 bits (59), Expect = 3.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 73 EEAQKRRWGSSLTCSMMAATFPGAEVPATHFPES 106
+E +K W SS C + + F G E+P F S
Sbjct: 389 DEPEKNSWVSSSPCQLSPSGFSGEELPFVGFSYS 422
>gi|7657419 opticin precursor [Homo sapiens]
Length = 332
Score = 27.3 bits (59), Expect = 3.9
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 13 YPQFLDYNPRIPNEIIVTATPSCSRSLAAYTELQGYCSQNPRKELAMSLPFSGGGLATT 71
Y + DY ++P + + P+ S S A T G S NP M+ P + G L ++
Sbjct: 65 YEELTDYGDQLPEVKVTSLAPATSISPAKSTTAPGTPSSNP----TMTRPTTAGLLLSS 119
>gi|109148522 insulin- insulin-like growth factor 2 [Homo sapiens]
Length = 200
Score = 27.3 bits (59), Expect = 3.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 2 TSLSWSRSDCTYPQFLDYNPRIPNEIIVTA 31
++LS S S T+P+ LD R P ++VTA
Sbjct: 64 SALSLSSSTSTWPEGLDATARAPPALVVTA 93
>gi|4557595 forkhead box F2 [Homo sapiens]
Length = 444
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 16 FLDYNPRIPNEIIVTATPSCSRSLAAYTELQGYCSQNPRKELAMSLP 62
+L P + A+ S+++Y+ Q Y QN R++L++ LP
Sbjct: 348 YLKQPPALTPSSNPAASAGLHSSMSSYSLEQSYLHQNAREDLSVGLP 394
>gi|148839294 Ca2+-dependent activator protein for secretion 2
isoform a [Homo sapiens]
Length = 1296
Score = 26.2 bits (56), Expect = 8.8
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 44 ELQGYCSQNPRKELAMSLPFSGGGLATTAEEAQKRRWGSSLTCSMMAATFPGAEVPATHF 103
E+QG S P + + ++ G L T EA + +WG T T P V F
Sbjct: 373 EVQGLKSVAPNRIVYCTMEVEGEKLQTDQAEASRPQWG---TQGDFTTTHPRPVVKVKLF 429
Query: 104 PES 106
ES
Sbjct: 430 TES 432
>gi|148839284 Ca2+-dependent activator protein for secretion 2
isoform b [Homo sapiens]
Length = 1255
Score = 26.2 bits (56), Expect = 8.8
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 44 ELQGYCSQNPRKELAMSLPFSGGGLATTAEEAQKRRWGSSLTCSMMAATFPGAEVPATHF 103
E+QG S P + + ++ G L T EA + +WG T T P V F
Sbjct: 373 EVQGLKSVAPNRIVYCTMEVEGEKLQTDQAEASRPQWG---TQGDFTTTHPRPVVKVKLF 429
Query: 104 PES 106
ES
Sbjct: 430 TES 432
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 26.2 bits (56), Expect = 8.8
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 30 TATPSCSRSLAAYTELQGYCSQNPRKELAMSLPFSGGGLATTAEEAQKRRWGSSLTCSMM 89
TATP+ ++ L + + +GY P + + P GG A+ A + WG++ +
Sbjct: 290 TATPTLNQLLTSPSSARGYQGY-PGGDYSGG-PQDGGAGKGPADMASQC-WGAAAAAAAA 346
Query: 90 AATFPGAEVPATHFPES 106
AA GA+ + H P S
Sbjct: 347 AAASGGAQQRSHHAPMS 363
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 26.2 bits (56), Expect = 8.8
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 30 TATPSCSRSLAAYTELQGYCSQNPRKELAMSLPFSGGGLATTAEEAQKRRWGSSLTCSMM 89
TATP+ ++ L + + +GY P + + P GG A+ A + WG++ +
Sbjct: 290 TATPTLNQLLTSPSSARGYQGY-PGGDYSGG-PQDGGAGKGPADMASQC-WGAAAAAAAA 346
Query: 90 AATFPGAEVPATHFPES 106
AA GA+ + H P S
Sbjct: 347 AAASGGAQQRSHHAPMS 363
>gi|32699050 hypothetical protein LOC348110 [Homo sapiens]
Length = 226
Score = 26.2 bits (56), Expect = 8.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 87 SMMAATFPGAEVPATHFPESGVTREGHTLYSRRGSVVD 124
++ + PGA PA H +GV EG + R S++D
Sbjct: 14 AVQSVRLPGAWDPAAHQGGNGVLLEGELIDVSRHSILD 51
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.127 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,512,855
Number of Sequences: 37866
Number of extensions: 217596
Number of successful extensions: 474
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 460
Number of HSP's gapped (non-prelim): 21
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.