Guide to the Human Genome
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Name: C15orf38 Sequence: fasta or formatted (226aa) NCBI GI: 32699050
Description:

hypothetical protein LOC348110

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         20           3
 C cysteine            0.9          2           1
 D aspartate           7.1         16           2
 E glutamate           8.8         20           2
 F phenylalanine       2.7          6           1
 G glycine             9.7         22           2
 H histidine           3.1          7           1
 I isoleucine          3.5          8           1
 K lysine              6.6         15           1
 L leucine             9.3         21           2
 M methionine          2.7          6           1
 N asparagine          3.5          8           1
 P proline             4.0          9           1
 Q glutamine           1.8          4           1
 R arginine            6.2         14           2
 S serine              5.8         13           2
 T threonine           6.2         14           1
 V valine              5.3         12           1
 W tryptophan          1.8          4           1
 Y tyrosine            2.2          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC348110 
CWF19L2               0.021   CWF19-like 2, cell cycle control 
SEZ6                  0.018   seizure related 6 homolog isoform 2 
SEZ6                  0.018   seizure related 6 homolog isoform 1 
IRGQ                  0.014   immunity-related GTPase family, Q 
NIPBL                 0.014   delangin isoform B 
NIPBL                 0.014   delangin isoform A 
KIAA0182              0.011   genetic suppressor element 1 isoform 2 
KIAA0182              0.011   genetic suppressor element 1 isoform 1 
CD2AP                 0.009   CD2-associated protein 
WDR19                 0.007   WD repeat domain 19 
TMEM90A               0.007   transmembrane protein 90A 
SERPINA11             0.007   serpin peptidase inhibitor, clade A (alpha-1 antipr...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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