Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100130445 Sequence: fasta or formatted (136aa) NCBI GI: 239757962
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         11           2
 C cysteine            2.9          4           1
 D aspartate           2.2          3           1
 E glutamate           5.9          8           2
 F phenylalanine       2.9          4           1
 G glycine             6.6          9           3
 H histidine           2.2          3           1
 I isoleucine          2.2          3           2
 K lysine              2.2          3           1
 L leucine             7.4         10           1
 M methionine          3.7          5           2
 N asparagine          2.9          4           1
 P proline             6.6          9           1
 Q glutamine           3.7          5           1
 R arginine            7.4         10           2
 S serine             12.5         17           2
 T threonine          10.3         14           2
 V valine              4.4          6           2
 W tryptophan          1.5          2           1
 Y tyrosine            4.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
HPDL                  0.020   glyoxalase domain containing 1 
USP31                 0.012   ubiquitin specific peptidase 31 
SPHK2                 0.012   sphingosine kinase 2 
MAGEB17               0.012   PREDICTED: melanoma antigen family B, 17 
MAGEB17               0.012   PREDICTED: melanoma antigen family B, 17 
MAGEB17               0.012   PREDICTED: melanoma antigen family B, 17 
TCOF1                 0.012   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.012   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.012   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.012   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.012   Treacher Collins-Franceschetti syndrome 1 isoform a ...
CIT                   0.008   citron 
OPTC                  0.008   opticin precursor 
INS-IGF2              0.008   insulin- insulin-like growth factor 2 
FOXF2                 0.008   forkhead box F2 
CADPS2                0.004   Ca2+-dependent activator protein for secretion 2 is...
CADPS2                0.004   Ca2+-dependent activator protein for secretion 2 is...
ARID1A                0.004   AT rich interactive domain 1A isoform a 
ARID1A                0.004   AT rich interactive domain 1A isoform b 
C15orf38              0.004   hypothetical protein LOC348110 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press