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Search of human proteins with 239757822
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757822 PREDICTED: similar to mitochondrial ribosomal
protein S18C [Homo sapiens]
(141 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757822 PREDICTED: similar to mitochondrial ribosomal prote... 295 6e-81
gi|169216268 PREDICTED: similar to mitochondrial ribosomal prote... 291 9e-80
gi|239746839 PREDICTED: hypothetical protein XP_002344238 [Homo ... 291 9e-80
gi|7705630 mitochondrial ribosomal protein S18C [Homo sapiens] 253 5e-68
gi|7662645 mitochondrial ribosomal protein S18B [Homo sapiens] 48 3e-06
gi|8922511 mitochondrial ribosomal protein S18A [Homo sapiens] 44 4e-05
gi|154800445 zinc finger protein 62 homolog [Homo sapiens] 29 1.5
gi|193211610 dipeptidase 3 isoform b [Homo sapiens] 28 1.9
gi|193211608 dipeptidase 3 isoform a [Homo sapiens] 28 1.9
gi|194440660 topoisomerase (DNA) II binding protein 1 [Homo sapi... 28 2.5
gi|21071008 transcobalamin I precursor [Homo sapiens] 28 3.3
gi|90669511 crystallin, zeta-like 1 [Homo sapiens] 28 3.3
gi|114688046 TBC1 domain family, member 4 [Homo sapiens] 27 4.3
gi|21237808 SWI/SNF-related matrix-associated actin-dependent re... 27 4.3
gi|21237805 SWI/SNF-related matrix-associated actin-dependent re... 27 4.3
gi|194363725 SWI/SNF-related matrix-associated actin-dependent r... 27 4.3
gi|239743587 PREDICTED: hypothetical protein [Homo sapiens] 27 5.6
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 27 7.3
gi|32490557 poly(A) polymerase alpha [Homo sapiens] 27 7.3
gi|216548223 synaptic vesicle glycoprotein 2 [Homo sapiens] 26 9.5
>gi|239757822 PREDICTED: similar to mitochondrial ribosomal protein
S18C [Homo sapiens]
Length = 141
Score = 295 bits (756), Expect = 6e-81
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MVAVCGGLGRKKLTHLVTAAVCLTHPGTPMVLSRRGYSQYKQVSSIEDLPTPMENPYKES 60
MVAVCGGLGRKKLTHLVTAAVCLTHPGTPMVLSRRGYSQYKQVSSIEDLPTPMENPYKES
Sbjct: 1 MVAVCGGLGRKKLTHLVTAAVCLTHPGTPMVLSRRGYSQYKQVSSIEDLPTPMENPYKES 60
Query: 61 LKKCVLCGKHVNYKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKEITKAIKRAQIMGFMP 120
LKKCVLCGKHVNYKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKEITKAIKRAQIMGFMP
Sbjct: 61 LKKCVLCGKHVNYKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKEITKAIKRAQIMGFMP 120
Query: 121 VTYKDPAYLKDPKVCNIRYQE 141
VTYKDPAYLKDPKVCNIRYQE
Sbjct: 121 VTYKDPAYLKDPKVCNIRYQE 141
>gi|169216268 PREDICTED: similar to mitochondrial ribosomal protein
S18C [Homo sapiens]
Length = 141
Score = 291 bits (746), Expect = 9e-80
Identities = 140/141 (99%), Positives = 140/141 (99%)
Query: 1 MVAVCGGLGRKKLTHLVTAAVCLTHPGTPMVLSRRGYSQYKQVSSIEDLPTPMENPYKES 60
MVAVCGGLGRKKLTHLVTAAV LTHPGTPMVLSRRGYSQYKQVSSIEDLPTPMENPYKES
Sbjct: 1 MVAVCGGLGRKKLTHLVTAAVSLTHPGTPMVLSRRGYSQYKQVSSIEDLPTPMENPYKES 60
Query: 61 LKKCVLCGKHVNYKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKEITKAIKRAQIMGFMP 120
LKKCVLCGKHVNYKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKEITKAIKRAQIMGFMP
Sbjct: 61 LKKCVLCGKHVNYKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKEITKAIKRAQIMGFMP 120
Query: 121 VTYKDPAYLKDPKVCNIRYQE 141
VTYKDPAYLKDPKVCNIRYQE
Sbjct: 121 VTYKDPAYLKDPKVCNIRYQE 141
>gi|239746839 PREDICTED: hypothetical protein XP_002344238 [Homo
sapiens]
Length = 141
Score = 291 bits (746), Expect = 9e-80
Identities = 140/141 (99%), Positives = 140/141 (99%)
Query: 1 MVAVCGGLGRKKLTHLVTAAVCLTHPGTPMVLSRRGYSQYKQVSSIEDLPTPMENPYKES 60
MVAVCGGLGRKKLTHLVTAAV LTHPGTPMVLSRRGYSQYKQVSSIEDLPTPMENPYKES
Sbjct: 1 MVAVCGGLGRKKLTHLVTAAVSLTHPGTPMVLSRRGYSQYKQVSSIEDLPTPMENPYKES 60
Query: 61 LKKCVLCGKHVNYKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKEITKAIKRAQIMGFMP 120
LKKCVLCGKHVNYKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKEITKAIKRAQIMGFMP
Sbjct: 61 LKKCVLCGKHVNYKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKEITKAIKRAQIMGFMP 120
Query: 121 VTYKDPAYLKDPKVCNIRYQE 141
VTYKDPAYLKDPKVCNIRYQE
Sbjct: 121 VTYKDPAYLKDPKVCNIRYQE 141
>gi|7705630 mitochondrial ribosomal protein S18C [Homo sapiens]
Length = 142
Score = 253 bits (645), Expect = 5e-68
Identities = 124/141 (87%), Positives = 129/141 (91%), Gaps = 2/141 (1%)
Query: 1 MVAVCGGLGRKKLTHLVTAAVCLTHPGTPMVLSRRGYSQYKQVSSIEDLPTPMENPYKES 60
+VAVCGGLGRKKLTHLVTAAV LTHPGT VL RRG SQ QVSS EDLP MENPYKE
Sbjct: 4 VVAVCGGLGRKKLTHLVTAAVSLTHPGTHTVLWRRGCSQ--QVSSNEDLPISMENPYKEP 61
Query: 61 LKKCVLCGKHVNYKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKEITKAIKRAQIMGFMP 120
LKKC+LCGKHV+YKN QLLSQFVSPFTGCIYGRH+TGLCGKKQKEITKAIKRAQIMGFMP
Sbjct: 62 LKKCILCGKHVDYKNVQLLSQFVSPFTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFMP 121
Query: 121 VTYKDPAYLKDPKVCNIRYQE 141
VTYKDPAYLKDPKVCNIRY+E
Sbjct: 122 VTYKDPAYLKDPKVCNIRYRE 142
>gi|7662645 mitochondrial ribosomal protein S18B [Homo sapiens]
Length = 258
Score = 47.8 bits (112), Expect = 3e-06
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 64 CVLCGKH---VNYKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKEITKAIKRAQIMGFM 119
C +C H V+++N +LL QFV TG I+ TG+C K+ K +T+AI++A+ G +
Sbjct: 105 CPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLL 163
>gi|8922511 mitochondrial ribosomal protein S18A [Homo sapiens]
Length = 196
Score = 43.9 bits (102), Expect = 4e-05
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 51 TPMENPYKESLK-KCVLCG---KH-VNYKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKE 105
TP E+P + +C +C KH NY + LLSQF+ P G + R +TGLC ++ ++
Sbjct: 56 TPKESPNPPNPSGQCPICRWNLKHKYNYDDVLLLSQFIRPHGGML-PRKITGLCQEEHRK 114
Query: 106 ITKAIKRAQIMGFMP 120
I + +K A G +P
Sbjct: 115 IEECVKMAHRAGLLP 129
>gi|154800445 zinc finger protein 62 homolog [Homo sapiens]
Length = 840
Score = 28.9 bits (63), Expect = 1.5
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 5 CGGLGRKKLTHLVTAAVCLTHPG-TPMVLSRRGYSQYKQVSSIEDLPTPM-ENPYKESLK 62
C G+ ++H THPG TP G + + + I + E P+K
Sbjct: 615 CDVCGKAYISHSSLINHKSTHPGKTPHTCDECGKAFFSSRTLISHKRVHLGEKPFK---- 670
Query: 63 KCVLCGKHVNYKNAQLLSQFVSPFTGCIYGRHVTGLCGK 101
CV CGK +Y + LLSQ TG +V CGK
Sbjct: 671 -CVECGKSFSY--SSLLSQHKRIHTG--EKPYVCDRCGK 704
>gi|193211610 dipeptidase 3 isoform b [Homo sapiens]
Length = 512
Score = 28.5 bits (62), Expect = 1.9
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 23 LTHPGTPMVLSRRGYSQ-----YKQVSSIEDLPTPMENPYKESLK 62
LT PGTP L RG +Q + V DLP + YK L+
Sbjct: 94 LTTPGTPKTLDLRGRAQALMRSFPLVDGHNDLPQVLRQRYKNVLQ 138
>gi|193211608 dipeptidase 3 isoform a [Homo sapiens]
Length = 513
Score = 28.5 bits (62), Expect = 1.9
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 23 LTHPGTPMVLSRRGYSQ-----YKQVSSIEDLPTPMENPYKESLK 62
LT PGTP L RG +Q + V DLP + YK L+
Sbjct: 94 LTTPGTPKTLDLRGRAQALMRSFPLVDGHNDLPQVLRQRYKNVLQ 138
>gi|194440660 topoisomerase (DNA) II binding protein 1 [Homo
sapiens]
Length = 1522
Score = 28.1 bits (61), Expect = 2.5
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 14/112 (12%)
Query: 28 TPMVLSRRGYSQYKQVSSIED---LPTPMENPYKESLKKCVLCGKHVNYKNAQLLSQFVS 84
T ++ G +Y ++++ LP+ ++ +++S +K + +N + F
Sbjct: 144 THLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQEKKITRYTDIN------MEDFKC 197
Query: 85 P-FTGCIYGRHVTGLCGKKQKEITKAIKR--AQIMGFMPVTYKDPAYLKDPK 133
P F GCI VTGLCG +KE+ + + Q MG + + +++PK
Sbjct: 198 PIFLGCIIC--VTGLCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPK 247
>gi|21071008 transcobalamin I precursor [Homo sapiens]
Length = 433
Score = 27.7 bits (60), Expect = 3.3
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 51 TPMENPYKESLKKCVLCGKHVNYKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKEITKAI 110
TP+ N Y+ SL LC + NY A++++ F +G + G +
Sbjct: 139 TPLTNYYQLSLDVLALCLFNGNYSTAEVVNHFTPENKNYYFGSQFSVDTGAMAVLALTCV 198
Query: 111 KRAQIMG 117
K++ I G
Sbjct: 199 KKSLING 205
>gi|90669511 crystallin, zeta-like 1 [Homo sapiens]
Length = 349
Score = 27.7 bits (60), Expect = 3.3
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 47 EDLPTPMENPYKESLKKCVLCGKHVNYKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKEI 106
EDLP +N K +K C L + N +LL++ GR + G+ ++
Sbjct: 23 EDLPVTEDNFVKLQVKACAL-----SQINTKLLAEMKMKKDLFPVGREIAGIVLDVGSKV 77
Query: 107 TKAIKRAQIMGFMPVTYKDP 126
+ +++G +P+ +DP
Sbjct: 78 SFFQPDDEVVGILPLDSEDP 97
>gi|114688046 TBC1 domain family, member 4 [Homo sapiens]
Length = 1298
Score = 27.3 bits (59), Expect = 4.3
Identities = 12/55 (21%), Positives = 25/55 (45%)
Query: 58 KESLKKCVLCGKHVNYKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKEITKAIKR 112
K +K C C H +K + + P + RH++ L +Q +I + +++
Sbjct: 447 KTQIKLCEACPMHSLHKLCERIEGLYPPRAKLVIQRHLSSLTDNEQADIFERVQK 501
>gi|21237808 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform b [Homo sapiens]
Length = 1130
Score = 27.3 bits (59), Expect = 4.3
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 26 PGTPMVLSRRGYSQYKQVSSIEDL--PTPMENPYKESLKKCV 65
P TP S+RG+ + +Q +D+ P+P+ N + +L K V
Sbjct: 320 PSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKTV 361
>gi|21237805 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform a [Homo sapiens]
Length = 1214
Score = 27.3 bits (59), Expect = 4.3
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 26 PGTPMVLSRRGYSQYKQVSSIEDL--PTPMENPYKESLKKCV 65
P TP S+RG+ + +Q +D+ P+P+ N + +L K V
Sbjct: 320 PSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKTV 361
>gi|194363725 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform c [Homo sapiens]
Length = 1152
Score = 27.3 bits (59), Expect = 4.3
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 26 PGTPMVLSRRGYSQYKQVSSIEDL--PTPMENPYKESLKKCV 65
P TP S+RG+ + +Q +D+ P+P+ N + +L K V
Sbjct: 320 PSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKTV 361
>gi|239743587 PREDICTED: hypothetical protein [Homo sapiens]
Length = 236
Score = 26.9 bits (58), Expect = 5.6
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 4 VCGGLGRKKLTHLVTAAVCLTHPGTPMVLSRRGYSQYKQVSSIEDLPTPME--NPYKESL 61
+ GLG + + L + + LT PGTP VL R K + + L P+E + KE L
Sbjct: 69 IFSGLGSQSINDL-SGELSLTPPGTP-VLQSRALMALKHCEARKRLKLPLESASTLKEIL 126
Query: 62 KKCVLC 67
+C
Sbjct: 127 ASHCVC 132
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 26.6 bits (57), Expect = 7.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 37 YSQYKQVSSIEDLPTPMEN 55
Y Q +QVSS LP PMEN
Sbjct: 1362 YQQQQQVSSPAPLPRPMEN 1380
>gi|32490557 poly(A) polymerase alpha [Homo sapiens]
Length = 745
Score = 26.6 bits (57), Expect = 7.3
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 47 EDLPTPMENPYKESLKKCVLCG----KHVNYKNAQL-LSQFVSPFTGCIYGRHVTGLCGK 101
+ P P ENP KE + + G K N +N + L+ + FT +Y + + +
Sbjct: 419 QSFPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFE 478
Query: 102 KQKEITKA-IKRAQIMGFMP 120
+I +KR Q+ +P
Sbjct: 479 VDMKIAAMHVKRKQLHQLLP 498
>gi|216548223 synaptic vesicle glycoprotein 2 [Homo sapiens]
Length = 742
Score = 26.2 bits (56), Expect = 9.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 33 SRRGYSQYKQVSSIEDLPTPMENPYK 58
SRR YS++++ +D P P + Y+
Sbjct: 42 SRRSYSRFEEEDDDDDFPAPSDGYYR 67
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,882,783
Number of Sequences: 37866
Number of extensions: 241650
Number of successful extensions: 654
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 23
length of query: 141
length of database: 18,247,518
effective HSP length: 92
effective length of query: 49
effective length of database: 14,763,846
effective search space: 723428454
effective search space used: 723428454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.