Guide to the Human Genome
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Name: LOC100292021 Sequence: fasta or formatted (233aa) NCBI GI: 239757765
Description:

PREDICTED: similar to thioredoxin peroxidase

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         16           2
 C cysteine            1.3          3           1
 D aspartate           6.0         14           2
 E glutamate           7.7         18           3
 F phenylalanine       6.0         14           3
 G glycine             6.0         14           2
 H histidine           3.0          7           1
 I isoleucine          4.3         10           2
 K lysine              5.2         12           2
 L leucine            12.4         29           4
 M methionine          0.9          2           1
 N asparagine          1.3          3           1
 P proline             5.2         12           1
 Q glutamine           2.6          6           1
 R arginine            7.7         18           2
 S serine              5.6         13           2
 T threonine           6.0         14           2
 V valine              6.4         15           2
 W tryptophan          1.7          4           1
 Y tyrosine            3.9          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to thioredoxin peroxidase 
PRDX4                 0.840   peroxiredoxin 4 
PRDX1                 0.373   peroxiredoxin 1 
PRDX1                 0.373   peroxiredoxin 1 
PRDX1                 0.373   peroxiredoxin 1 
PRDX2                 0.373   peroxiredoxin 2 isoform a 
PRDX3                 0.335   peroxiredoxin 3 isoform a precursor 
PRDX3                 0.335   peroxiredoxin 3 isoform b 
PRDX2                 0.226   peroxiredoxin 2 isoform c 
PRDX6                 0.049   peroxiredoxin 6 
LOC100133641          0.022   PREDICTED: similar to peroxiredoxin 6 
HDGF                  0.011   hepatoma-derived growth factor isoform c 
ANKRD9                0.011   ankyrin repeat domain 9 
SCPEP1                0.009   serine carboxypeptidase 1 precursor 
BPI                   0.007   bactericidal/permeability-increasing protein precur...
HDGF                  0.007   hepatoma-derived growth factor isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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