Guide to the Human Genome
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Name: PRDX1 Sequence: fasta or formatted (199aa) NCBI GI: 32455264
Description:

peroxiredoxin 1

Referenced in:

Glutathione Pathways

Other entries for this name:
alt mRNA [199aa] peroxiredoxin 1
alt mRNA [199aa] peroxiredoxin 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         12           1
 C cysteine            2.0          4           1
 D aspartate           8.0         16           2
 E glutamate           3.5          7           2
 F phenylalanine       7.5         15           3
 G glycine             8.0         16           2
 H histidine           2.0          4           1
 I isoleucine          6.5         13           2
 K lysine              9.5         19           2
 L leucine             6.0         12           1
 M methionine          1.5          3           1
 N asparagine          3.0          6           1
 P proline             6.5         13           1
 Q glutamine           4.5          9           1
 R arginine            3.0          6           1
 S serine              6.5         13           2
 T threonine           4.5          9           1
 V valine              7.5         15           2
 W tryptophan          1.0          2           1
 Y tyrosine            2.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peroxiredoxin 1 
PRDX1                 1.000   peroxiredoxin 1 
PRDX1                 1.000   peroxiredoxin 1 
PRDX2                 0.793   peroxiredoxin 2 isoform a 
PRDX4                 0.677   peroxiredoxin 4 
PRDX3                 0.618   peroxiredoxin 3 isoform a precursor 
PRDX3                 0.618   peroxiredoxin 3 isoform b 
LOC100292021          0.434   PREDICTED: similar to thioredoxin peroxidase 
PRDX2                 0.310   peroxiredoxin 2 isoform c 
PRDX6                 0.142   peroxiredoxin 6 
LOC100133641          0.026   PREDICTED: similar to peroxiredoxin 6 
NPY1R                 0.013   neuropeptide Y receptor Y1 
HDGF                  0.008   hepatoma-derived growth factor isoform c 
HDGF                  0.008   hepatoma-derived growth factor isoform b 
HDGF                  0.008   hepatoma-derived growth factor isoform a 
KIAA1432              0.008   connexin 43-interacting protein 150 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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