Guide to the Human Genome
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Name: BPI Sequence: fasta or formatted (487aa) NCBI GI: 157276599
Description:

bactericidal/permeability-increasing protein precursor

Referenced in:

Lipoproteins
Additional Host Defense Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         32           2
 C cysteine            0.8          4           1
 D aspartate           3.3         16           2
 E glutamate           4.1         20           1
 F phenylalanine       5.1         25           2
 G glycine             5.7         28           1
 H histidine           2.9         14           2
 I isoleucine          5.5         27           1
 K lysine              7.2         35           2
 L leucine            10.1         49           3
 M methionine          3.7         18           1
 N asparagine          4.9         24           1
 P proline             7.0         34           3
 Q glutamine           4.3         21           2
 R arginine            3.1         15           1
 S serine              9.2         45           2
 T threonine           4.7         23           2
 V valine              8.2         40           3
 W tryptophan          0.6          3           1
 Y tyrosine            2.9         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   bactericidal/permeability-increasing protein precur... 
LBP                   0.420   lipopolysaccharide-binding protein precursor 
BPIL2                 0.195   bactericidal/permeability-increasing protein-like 2 ...
PLTP                  0.158   phospholipid transfer protein isoform a precursor [Ho...
PLTP                  0.120   phospholipid transfer protein isoform b precursor [H...
LOC100292257          0.102   PREDICTED: similar to bactericidal/permeability-inc...
CETP                  0.087   cholesteryl ester transfer protein, plasma precurso...
BPIL1                 0.079   bactericidal/permeability-increasing protein-like 1 ...
C20orf186             0.066   antimicrobial peptide RY2G5 
BPIL3                 0.061   bactericidal/permeability-increasing protein-like 3 ...
C20orf185             0.049   antimicrobial peptide RYA3 
C20orf114             0.023   LPLUNC1 protein precursor 
CDCA2                 0.006   cell division cycle associated 2 
PMFBP1                0.004   polyamine modulated factor 1 binding protein 1 isof...
MIDN                  0.004   midnolin 
C10orf90              0.004   hypothetical protein LOC118611 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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