Guide to the Human Genome
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Name: LOC728438 Sequence: fasta or formatted (69aa) NCBI GI: 113429320
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7          6           1
 C cysteine            0.0          0           0
 D aspartate           4.3          3           1
 E glutamate           0.0          0           0
 F phenylalanine       4.3          3           1
 G glycine             8.7          6           1
 H histidine           2.9          2           1
 I isoleucine          4.3          3           1
 K lysine              1.4          1           1
 L leucine            23.2         16           4
 M methionine          2.9          2           1
 N asparagine          0.0          0           0
 P proline             8.7          6           1
 Q glutamine           4.3          3           1
 R arginine            5.8          4           1
 S serine              4.3          3           2
 T threonine           4.3          3           1
 V valine              7.2          5           2
 W tryptophan          1.4          1           1
 Y tyrosine            2.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728253             1.000   PREDICTED: hypothetical protein 
LOC728216             1.000   PREDICTED: hypothetical protein 
LOC727996             1.000   PREDICTED: hypothetical protein 
LOC100293142          0.548   PREDICTED: similar to hCG2040019 
GGT5                  0.252   gamma-glutamyltransferase 5 isoform c 
GGT5                  0.252   gamma-glutamyltransferase 5 isoform a 
GGT5                  0.252   gamma-glutamyltransferase 5 isoform b 
PNPLA6                0.043   patatin-like phospholipase domain containing 6 [Hom...
TNK2                  0.017   tyrosine kinase, non-receptor, 2 isoform 1 
TNK2                  0.017   tyrosine kinase, non-receptor, 2 isoform 2 
MKL1                  0.017   megakaryoblastic leukemia 1 protein 
ADCY6                 0.017   adenylate cyclase 6 isoform a 
ADCY6                 0.017   adenylate cyclase 6 isoform b 
GLTSCR1               0.017   glioma tumor suppressor candidate region gene 1 [Ho...
DLL1                  0.009   delta-like 1 
C6orf25               0.009   G6B protein isoform G6b-B precursor 
GNAS                  0.009   GNAS complex locus alex 
C6orf25               0.009   G6B protein isoform G6b-G precursor 
C6orf25               0.009   G6B protein isoform G6b-A precursor 
RNASE10               0.009   ribonuclease, RNase A family, 10 (non-active) 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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