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Search of human proteins with 239757484
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757484 PREDICTED: similar to
bactericidal/permeability-increasing protein [Homo sapiens]
(159 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757484 PREDICTED: similar to bactericidal/permeability-inc... 318 9e-88
gi|157276599 bactericidal/permeability-increasing protein precur... 121 3e-28
gi|31652249 lipopolysaccharide-binding protein precursor [Homo s... 67 5e-12
gi|28372551 bactericidal/permeability-increasing protein-like 2 ... 45 3e-05
gi|5453914 phospholipid transfer protein isoform a precursor [Ho... 36 0.012
gi|33356541 phospholipid transfer protein isoform b precursor [H... 36 0.012
gi|7662342 zinc fingers and homeoboxes 2 [Homo sapiens] 30 1.1
gi|58761508 midnolin [Homo sapiens] 30 1.1
gi|109826351 melanophilin isoform 2 [Homo sapiens] 29 1.9
gi|13129108 melanophilin isoform 1 [Homo sapiens] 29 1.9
gi|7656936 zinc finger, HIT domain containing 2 [Homo sapiens] 29 1.9
gi|208609990 nucleoporin 93kDa [Homo sapiens] 27 5.6
gi|42542394 lysophosphatidylcholine acyltransferase 3 [Homo sapi... 27 7.4
gi|156086740 GTPase activating Rap/RanGAP domain-like 4 isoform ... 27 7.4
gi|24307969 cytoplasmic FMR1 interacting protein 1 isoform a [Ho... 27 9.6
gi|74271907 cytoplasmic FMR1 interacting protein 1 isoform b [Ho... 27 9.6
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 27 9.6
gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens] 27 9.6
gi|83776598 virus-induced signaling adapter [Homo sapiens] 27 9.6
gi|118582257 vesicular acetylcholine transporter [Homo sapiens] 27 9.6
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 27 9.6
>gi|239757484 PREDICTED: similar to
bactericidal/permeability-increasing protein [Homo
sapiens]
Length = 159
Score = 318 bits (816), Expect = 9e-88
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MPEGQLRSPAGPQLPAVLSSVPGSFGKEVQVPWRMPVQVLLGLQEPYVVCEKVTNSVSSE 60
MPEGQLRSPAGPQLPAVLSSVPGSFGKEVQVPWRMPVQVLLGLQEPYVVCEKVTNSVSSE
Sbjct: 1 MPEGQLRSPAGPQLPAVLSSVPGSFGKEVQVPWRMPVQVLLGLQEPYVVCEKVTNSVSSE 60
Query: 61 LQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKVELLQDIMNYIVPILVLPRV 120
LQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKVELLQDIMNYIVPILVLPRV
Sbjct: 61 LQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKVELLQDIMNYIVPILVLPRV 120
Query: 121 NEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVVYK 159
NEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVVYK
Sbjct: 121 NEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVVYK 159
>gi|157276599 bactericidal/permeability-increasing protein precursor
[Homo sapiens]
Length = 487
Score = 121 bits (303), Expect = 3e-28
Identities = 59/59 (100%), Positives = 59/59 (100%)
Query: 101 VELLQDIMNYIVPILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVVYK 159
VELLQDIMNYIVPILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVVYK
Sbjct: 429 VELLQDIMNYIVPILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVVYK 487
Score = 108 bits (269), Expect = 3e-24
Identities = 55/80 (68%), Positives = 64/80 (80%), Gaps = 4/80 (5%)
Query: 49 VCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKVELLQDIM 108
VCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMK E +
Sbjct: 205 VCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENH 264
Query: 109 N----YIVPILVLPRVNEKL 124
+ + P++ P ++++
Sbjct: 265 HNPPPFAPPVMEFPAAHDRM 284
>gi|31652249 lipopolysaccharide-binding protein precursor [Homo
sapiens]
Length = 481
Score = 67.4 bits (163), Expect = 5e-12
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 49 VCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKVELLQDIM 108
+CE + SVSS+LQPY QTLPV T+IDS A I+Y LV P TA+ L+V K E+
Sbjct: 197 ICEMIQKSVSSDLQPYLQTLPVTTEIDSFADIDYSLVEAPRATAQMLEVMFKGEIFH--R 254
Query: 109 NYIVPILVLPRV 120
N+ P+ +L V
Sbjct: 255 NHRSPVTLLAAV 266
Score = 65.9 bits (159), Expect = 1e-11
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 45 EPYVVCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINY----GLVAPPATTAETLDVQM- 99
+PY+ + SS +P F+ L V T + + N G + P E + ++
Sbjct: 359 DPYMEIDAFVLLPSSSKEPVFR-LSVATNVSATLTFNTSKITGFLKPGKVKVELKESKVG 417
Query: 100 --KVELLQDIMNYIVPILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVV 157
ELL+ ++NY + P+ N+KL +GFPLP RVQLY++ LQ H++FL GA+V
Sbjct: 418 LFNAELLEALLNYYILNTFYPKFNDKLAEGFPLPLLKRVQLYDLGLQIHKDFLFLGANVQ 477
Query: 158 Y 158
Y
Sbjct: 478 Y 478
>gi|28372551 bactericidal/permeability-increasing protein-like 2
[Homo sapiens]
Length = 507
Score = 45.1 bits (105), Expect = 3e-05
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 56 SVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDV-----------QMKVELL 104
S+ QP T+ + +D VA + GLV +L + + +E+L
Sbjct: 363 SIMMLTQPKNSTVETIVSMDFVASTSVGLVILGQRLVCSLSLNRFRLALPESNRSNIEVL 422
Query: 105 --QDIMNYIVPILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVVYK 159
++I++ I+ VLP N KLQ+GFPL P + N ++ + FLL D+ Y+
Sbjct: 423 RFENILSSILHFGVLPLANAKLQQGFPLSNPHKFLFVNSDIEVLEGFLLISTDLKYE 479
Score = 39.3 bits (90), Expect = 0.001
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 16 AVLSSVPGSFGKEVQVPWR-----MPVQVLLGLQEPYVVCEKVTNSVSSELQPYFQTLPV 70
A LS SF E+ V + M +L L E ++C + + V + L TL V
Sbjct: 163 AQLSHAHVSFSGELSVLYNSFAEPMEKPILKNLNE--MLCPIIASEVKA-LNANLSTLEV 219
Query: 71 MTKIDSVAGINYGLVAPPATTAETLDVQMK-----VELLQDIMNYIVPILVLPRVNEKLQ 125
+TKID+ ++Y L++ P T LD+ +K +E L D VP ++ R N L
Sbjct: 220 LTKIDNYTLLDYSLISSPEITENYLDLNLKGVFYPLENLTDPPFSPVPFVLPERSNSMLY 279
Query: 126 KG 127
G
Sbjct: 280 IG 281
>gi|5453914 phospholipid transfer protein isoform a precursor [Homo
sapiens]
Length = 493
Score = 36.2 bits (82), Expect = 0.012
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 104 LQDIMNYIVPILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADV 156
LQ + ++ I V+P +NE+ +G +P P + + V+ H FL GAD+
Sbjct: 410 LQAPLKTMLQIGVMPMLNERTWRGVQIPLPEGINFVHEVVTNHAGFLTIGADL 462
Score = 33.1 bits (74), Expect = 0.10
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 49 VCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMK 100
+C + ++ + L T+PV + +D + GI+Y L+ P + LD+ +
Sbjct: 184 ICPVLYHAGTVLLNSLLDTVPVRSSVDELVGIDYSLMKDPVASTSNLDMDFR 235
>gi|33356541 phospholipid transfer protein isoform b precursor [Homo
sapiens]
Length = 441
Score = 36.2 bits (82), Expect = 0.012
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 104 LQDIMNYIVPILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADV 156
LQ + ++ I V+P +NE+ +G +P P + + V+ H FL GAD+
Sbjct: 358 LQAPLKTMLQIGVMPMLNERTWRGVQIPLPEGINFVHEVVTNHAGFLTIGADL 410
Score = 33.1 bits (74), Expect = 0.10
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 49 VCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMK 100
+C + ++ + L T+PV + +D + GI+Y L+ P + LD+ +
Sbjct: 132 ICPVLYHAGTVLLNSLLDTVPVRSSVDELVGIDYSLMKDPVASTSNLDMDFR 183
>gi|7662342 zinc fingers and homeoboxes 2 [Homo sapiens]
Length = 837
Score = 29.6 bits (65), Expect = 1.1
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 91 TAETLDVQMKVELLQDIMNYIVPILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFL 150
TAE L VELLQD + +++P + LP + K +P P YN L + +
Sbjct: 222 TAEILSRLGGVELLQDTLGHVMPSVQLPPNINLVPK---VPVPLNTTKYNSALDTNATMI 278
>gi|58761508 midnolin [Homo sapiens]
Length = 468
Score = 29.6 bits (65), Expect = 1.1
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 50 CEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKVEL 103
C + + EL P + P+ I S G Y L PP T E L ++ L
Sbjct: 11 CRRGAPGGACELGPAAEAAPMSLAIHSTTGTRYDLAVPPDETVEGLRKRLSQRL 64
>gi|109826351 melanophilin isoform 2 [Homo sapiens]
Length = 572
Score = 28.9 bits (63), Expect = 1.9
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 2 PEGQLRSPAGPQLPAVLSSVPGSFGKEVQVPWRMPVQVLLGLQEPYVVCEKVTNSVSSE 60
P G+ R + LP L V G GK + P P + PY++ K +NS+ S+
Sbjct: 474 PSGKPRRKSN--LPIFLPRVAGKLGKRPEDPNADPSSEAKAMAVPYLLRRKFSNSLKSQ 530
>gi|13129108 melanophilin isoform 1 [Homo sapiens]
Length = 600
Score = 28.9 bits (63), Expect = 1.9
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 2 PEGQLRSPAGPQLPAVLSSVPGSFGKEVQVPWRMPVQVLLGLQEPYVVCEKVTNSVSSE 60
P G+ R + LP L V G GK + P P + PY++ K +NS+ S+
Sbjct: 502 PSGKPRRKSN--LPIFLPRVAGKLGKRPEDPNADPSSEAKAMAVPYLLRRKFSNSLKSQ 558
>gi|7656936 zinc finger, HIT domain containing 2 [Homo sapiens]
Length = 403
Score = 28.9 bits (63), Expect = 1.9
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 10 AGPQLPAVLSSVPGSFGKEVQV-PWRMPVQVL--LGLQEPYVVCEKVTNSVSSELQPYFQ 66
AGPQL L + PGS E+++ P R P + EP E+V V P
Sbjct: 135 AGPQLLEELDNAPGSDAAELELAPARTPPDSVKDASAAEP-AAAERVLGDVPGACTPV-- 191
Query: 67 TLPVMTKIDSVAGINYGLVAP 87
V T+I ++ ++ G V+P
Sbjct: 192 ---VPTRIPAIVSLSRGPVSP 209
>gi|208609990 nucleoporin 93kDa [Homo sapiens]
Length = 819
Score = 27.3 bits (59), Expect = 5.6
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 67 TLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKV-ELLQDIMNYIVPILVLPRVNEKLQ 125
T P++ K+ SVA N GL A + KV EL+ +++ +VP + P+ N++
Sbjct: 605 TKPIINKVASVAE-NKGLFEEAAKLYDLAKNADKVLELMNKLLSPVVPQISAPQSNKERL 663
Query: 126 KGFPLPTPARVQLYNV 141
K L R + +
Sbjct: 664 KNMALSIAERYRAQGI 679
>gi|42542394 lysophosphatidylcholine acyltransferase 3 [Homo
sapiens]
Length = 487
Score = 26.9 bits (58), Expect = 7.4
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 22/148 (14%)
Query: 31 VPWRMPVQVL----LGLQEPYVVCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVA 86
+ W MP VL +GL Y K NS+SSE Q Y + + + VAG +Y A
Sbjct: 139 IKWTMPHCVLTLKLIGLAVDYFDGGKDQNSLSSEQQKY--AIRGVPSLLEVAGFSYFYGA 196
Query: 87 PPATTAETLDVQMK------VELLQDIMNYIVPILVLPRVNEKLQKGFPLPTPARVQLYN 140
+++ MK +++ I N I+P L + G+ L +P + Y
Sbjct: 197 FLVGPQFSMNHYMKLVQGELIDIPGKIPNSIIPALKRLSLGLFYLVGYTLLSPHITEDY- 255
Query: 141 VVLQPHQN---------FLLFGADVVYK 159
++ + + N L++G V+YK
Sbjct: 256 LLTEDYDNHPFWFRCMYMLIWGKFVLYK 283
>gi|156086740 GTPase activating Rap/RanGAP domain-like 4 isoform 2
[Homo sapiens]
Length = 715
Score = 26.9 bits (58), Expect = 7.4
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 85 VAPPATTAETLDVQMKVELLQDIMNYIVPILVLPRVNEKLQKGFPLP 131
++PP T T+ E+L+ + + +P P ++E ++KG P P
Sbjct: 44 LSPPLTAPPTMKSSEFFEMLEKMQDDYIP---YPSIDEVVEKGGPYP 87
>gi|24307969 cytoplasmic FMR1 interacting protein 1 isoform a [Homo
sapiens]
Length = 1253
Score = 26.6 bits (57), Expect = 9.6
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 19 SSVPGSFGKEVQVPWRMPVQVLLGLQEPYVVCEKVTNSVSSELQ----PYFQTL-PVMTK 73
SS+ GS+ V P + LLG Q VV E++ V S LQ Y +TL VM K
Sbjct: 899 SSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPK 958
Query: 74 IDSVAGINYG 83
I + YG
Sbjct: 959 ICRLPRHEYG 968
>gi|74271907 cytoplasmic FMR1 interacting protein 1 isoform b [Homo
sapiens]
Length = 822
Score = 26.6 bits (57), Expect = 9.6
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 19 SSVPGSFGKEVQVPWRMPVQVLLGLQEPYVVCEKVTNSVSSELQ----PYFQTL-PVMTK 73
SS+ GS+ V P + LLG Q VV E++ V S LQ Y +TL VM K
Sbjct: 468 SSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPK 527
Query: 74 IDSVAGINYG 83
I + YG
Sbjct: 528 ICRLPRHEYG 537
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 26.6 bits (57), Expect = 9.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 9 PAGPQLPAVLSSVPGSFGKE 28
P GPQ P+ L +PG GKE
Sbjct: 673 PPGPQGPSGLPGIPGEEGKE 692
>gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens]
Length = 518
Score = 26.6 bits (57), Expect = 9.6
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 20 SVPGSFGKEVQVPWRMPVQVLLGLQEPYVVCEKV----TNSVSSELQPYFQTLP 69
++P FG + + LLGL + CEKV SVS EL+ F P
Sbjct: 269 NIPRKFGGSLSTICPRDHKALLGLVKEINRCEKVKTMEVTSVSIELEKNFSNFP 322
>gi|83776598 virus-induced signaling adapter [Homo sapiens]
Length = 540
Score = 26.6 bits (57), Expect = 9.6
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 11 GPQLPAVLSSVPGSFGKEVQVPWRMPVQVLLGLQEPYVVCEKVTNSVSSELQP 63
GP PA S+P + +E + + MPVQ + P E+ ++S P
Sbjct: 118 GPPTPAAAHSIPYNSCREKEPSYPMPVQETQAPESPGENSEQALQTLSPRAIP 170
>gi|118582257 vesicular acetylcholine transporter [Homo sapiens]
Length = 532
Score = 26.6 bits (57), Expect = 9.6
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 17/92 (18%)
Query: 62 QPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKVELLQDIMNYIVPILVLP--- 118
+P Q TK+ G + P + V + V LL D M Y+V + ++P
Sbjct: 5 EPAGQARAAATKLSEAVG---AALQEPRRQRRLVLVIVCVALLLDNMLYMVIVPIVPDYI 61
Query: 119 -----------RVNEKLQKGFPLPTPARVQLY 139
R E + PLPTPA Y
Sbjct: 62 AHMRGGGEGPTRTPEVWEPTLPLPTPANASAY 93
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 26.6 bits (57), Expect = 9.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 9 PAGPQLPAVLSSVPGSFGKE 28
P GPQ P+ L +PG GKE
Sbjct: 1226 PPGPQGPSGLPGIPGEEGKE 1245
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,455,388
Number of Sequences: 37866
Number of extensions: 275261
Number of successful extensions: 706
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 688
Number of HSP's gapped (non-prelim): 26
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.