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Search of human proteins with 239757116
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757116 PREDICTED: hypothetical protein [Homo sapiens]
(497 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757116 PREDICTED: hypothetical protein [Homo sapiens] 1003 0.0
gi|239751619 PREDICTED: hypothetical protein [Homo sapiens] 1003 0.0
gi|169213518 PREDICTED: hypothetical protein [Homo sapiens] 1003 0.0
gi|169211438 PREDICTED: hypothetical protein [Homo sapiens] 35 0.16
gi|169211910 PREDICTED: hypothetical protein [Homo sapiens] 35 0.16
gi|169211055 PREDICTED: hypothetical protein [Homo sapiens] 35 0.16
gi|239755957 PREDICTED: hypothetical protein [Homo sapiens] 32 1.7
gi|239753144 PREDICTED: hypothetical protein [Homo sapiens] 32 1.7
gi|239750477 PREDICTED: hypothetical protein [Homo sapiens] 32 1.7
gi|239747710 PREDICTED: hypothetical protein XP_002348232 [Homo ... 32 1.7
gi|239744773 PREDICTED: hypothetical protein XP_002343267 [Homo ... 32 1.7
gi|239741576 PREDICTED: hypothetical protein XP_002342255 [Homo ... 32 1.7
gi|4508029 zinc finger protein 45 [Homo sapiens] 31 2.3
gi|4504347 alpha 1 globin [Homo sapiens] 31 3.0
gi|239755536 PREDICTED: hypothetical protein [Homo sapiens] 31 3.0
gi|239749998 PREDICTED: hypothetical protein XP_002347249 [Homo ... 31 3.0
gi|239744309 PREDICTED: hypothetical protein XP_002343114 [Homo ... 31 3.0
gi|4504345 alpha 2 globin [Homo sapiens] 31 3.0
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 31 3.0
gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo sap... 31 3.0
gi|239757714 PREDICTED: hypothetical protein XP_002345529 [Homo ... 30 3.9
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 30 5.1
gi|150417973 supervillin isoform 2 [Homo sapiens] 30 6.6
gi|148276998 zinc finger protein 628 [Homo sapiens] 30 6.6
gi|22094125 zinc finger protein 28 [Homo sapiens] 29 8.7
>gi|239757116 PREDICTED: hypothetical protein [Homo sapiens]
Length = 497
Score = 1003 bits (2592), Expect = 0.0
Identities = 497/497 (100%), Positives = 497/497 (100%)
Query: 1 MTPQASSTKGSLTPPTLSAGRGDGRQNPSPDWCLKEARTSICYAAAGFPPSQQERGEGPG 60
MTPQASSTKGSLTPPTLSAGRGDGRQNPSPDWCLKEARTSICYAAAGFPPSQQERGEGPG
Sbjct: 1 MTPQASSTKGSLTPPTLSAGRGDGRQNPSPDWCLKEARTSICYAAAGFPPSQQERGEGPG 60
Query: 61 RKALQGHVVEGLHGTPGQQLLVQQLVGRLLEGIGGVHVGPCFDQGIHDGRAVVLGCYVHV 120
RKALQGHVVEGLHGTPGQQLLVQQLVGRLLEGIGGVHVGPCFDQGIHDGRAVVLGCYVHV
Sbjct: 61 RKALQGHVVEGLHGTPGQQLLVQQLVGRLLEGIGGVHVGPCFDQGIHDGRAVVLGCYVHV 120
Query: 121 QRGEAVLAPGRALEQAVDGLVLQLQGPFHFPDPFGENPHEVCKADLGAQAAFGGPVLKHV 180
QRGEAVLAPGRALEQAVDGLVLQLQGPFHFPDPFGENPHEVCKADLGAQAAFGGPVLKHV
Sbjct: 121 QRGEAVLAPGRALEQAVDGLVLQLQGPFHFPDPFGENPHEVCKADLGAQAAFGGPVLKHV 180
Query: 181 GEEFREGEEAAGGHGAQRLQVALLHVQGVLPQADAALEIARVGVHGTPVTDVIGSVRVRG 240
GEEFREGEEAAGGHGAQRLQVALLHVQGVLPQADAALEIARVGVHGTPVTDVIGSVRVRG
Sbjct: 181 GEEFREGEEAAGGHGAQRLQVALLHVQGVLPQADAALEIARVGVHGTPVTDVIGSVRVRG 240
Query: 241 TEDALPDQQGLHAHLIRVGDQRLQLLGGVDLPGIVIGQDQLWGLRFGQVLAPLVTQLHGP 300
TEDALPDQQGLHAHLIRVGDQRLQLLGGVDLPGIVIGQDQLWGLRFGQVLAPLVTQLHGP
Sbjct: 241 TEDALPDQQGLHAHLIRVGDQRLQLLGGVDLPGIVIGQDQLWGLRFGQVLAPLVTQLHGP 300
Query: 301 PPVFKGPKQISFLIHIRSSQQFQGFHGSFPAGGTAAFVRFPVQWFLWGGAAARSPLRLRT 360
PPVFKGPKQISFLIHIRSSQQFQGFHGSFPAGGTAAFVRFPVQWFLWGGAAARSPLRLRT
Sbjct: 301 PPVFKGPKQISFLIHIRSSQQFQGFHGSFPAGGTAAFVRFPVQWFLWGGAAARSPLRLRT 360
Query: 361 PLAGGGVFLGQPRLSLSPCDLLLAGLLLDEVLHDVGVARHAGREQRGHAVAVTFHAGLAP 420
PLAGGGVFLGQPRLSLSPCDLLLAGLLLDEVLHDVGVARHAGREQRGHAVAVTFHAGLAP
Sbjct: 361 PLAGGGVFLGQPRLSLSPCDLLLAGLLLDEVLHDVGVARHAGREQRGHAVAVTFHAGLAP 420
Query: 421 QQQLQDLQAAGLGAVMQGRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVAVPVGHL 480
QQQLQDLQAAGLGAVMQGRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVAVPVGHL
Sbjct: 421 QQQLQDLQAAGLGAVMQGRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVAVPVGHL 480
Query: 481 QVGLVLADQVAVAGGDE 497
QVGLVLADQVAVAGGDE
Sbjct: 481 QVGLVLADQVAVAGGDE 497
>gi|239751619 PREDICTED: hypothetical protein [Homo sapiens]
Length = 497
Score = 1003 bits (2592), Expect = 0.0
Identities = 497/497 (100%), Positives = 497/497 (100%)
Query: 1 MTPQASSTKGSLTPPTLSAGRGDGRQNPSPDWCLKEARTSICYAAAGFPPSQQERGEGPG 60
MTPQASSTKGSLTPPTLSAGRGDGRQNPSPDWCLKEARTSICYAAAGFPPSQQERGEGPG
Sbjct: 1 MTPQASSTKGSLTPPTLSAGRGDGRQNPSPDWCLKEARTSICYAAAGFPPSQQERGEGPG 60
Query: 61 RKALQGHVVEGLHGTPGQQLLVQQLVGRLLEGIGGVHVGPCFDQGIHDGRAVVLGCYVHV 120
RKALQGHVVEGLHGTPGQQLLVQQLVGRLLEGIGGVHVGPCFDQGIHDGRAVVLGCYVHV
Sbjct: 61 RKALQGHVVEGLHGTPGQQLLVQQLVGRLLEGIGGVHVGPCFDQGIHDGRAVVLGCYVHV 120
Query: 121 QRGEAVLAPGRALEQAVDGLVLQLQGPFHFPDPFGENPHEVCKADLGAQAAFGGPVLKHV 180
QRGEAVLAPGRALEQAVDGLVLQLQGPFHFPDPFGENPHEVCKADLGAQAAFGGPVLKHV
Sbjct: 121 QRGEAVLAPGRALEQAVDGLVLQLQGPFHFPDPFGENPHEVCKADLGAQAAFGGPVLKHV 180
Query: 181 GEEFREGEEAAGGHGAQRLQVALLHVQGVLPQADAALEIARVGVHGTPVTDVIGSVRVRG 240
GEEFREGEEAAGGHGAQRLQVALLHVQGVLPQADAALEIARVGVHGTPVTDVIGSVRVRG
Sbjct: 181 GEEFREGEEAAGGHGAQRLQVALLHVQGVLPQADAALEIARVGVHGTPVTDVIGSVRVRG 240
Query: 241 TEDALPDQQGLHAHLIRVGDQRLQLLGGVDLPGIVIGQDQLWGLRFGQVLAPLVTQLHGP 300
TEDALPDQQGLHAHLIRVGDQRLQLLGGVDLPGIVIGQDQLWGLRFGQVLAPLVTQLHGP
Sbjct: 241 TEDALPDQQGLHAHLIRVGDQRLQLLGGVDLPGIVIGQDQLWGLRFGQVLAPLVTQLHGP 300
Query: 301 PPVFKGPKQISFLIHIRSSQQFQGFHGSFPAGGTAAFVRFPVQWFLWGGAAARSPLRLRT 360
PPVFKGPKQISFLIHIRSSQQFQGFHGSFPAGGTAAFVRFPVQWFLWGGAAARSPLRLRT
Sbjct: 301 PPVFKGPKQISFLIHIRSSQQFQGFHGSFPAGGTAAFVRFPVQWFLWGGAAARSPLRLRT 360
Query: 361 PLAGGGVFLGQPRLSLSPCDLLLAGLLLDEVLHDVGVARHAGREQRGHAVAVTFHAGLAP 420
PLAGGGVFLGQPRLSLSPCDLLLAGLLLDEVLHDVGVARHAGREQRGHAVAVTFHAGLAP
Sbjct: 361 PLAGGGVFLGQPRLSLSPCDLLLAGLLLDEVLHDVGVARHAGREQRGHAVAVTFHAGLAP 420
Query: 421 QQQLQDLQAAGLGAVMQGRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVAVPVGHL 480
QQQLQDLQAAGLGAVMQGRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVAVPVGHL
Sbjct: 421 QQQLQDLQAAGLGAVMQGRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVAVPVGHL 480
Query: 481 QVGLVLADQVAVAGGDE 497
QVGLVLADQVAVAGGDE
Sbjct: 481 QVGLVLADQVAVAGGDE 497
>gi|169213518 PREDICTED: hypothetical protein [Homo sapiens]
Length = 497
Score = 1003 bits (2592), Expect = 0.0
Identities = 497/497 (100%), Positives = 497/497 (100%)
Query: 1 MTPQASSTKGSLTPPTLSAGRGDGRQNPSPDWCLKEARTSICYAAAGFPPSQQERGEGPG 60
MTPQASSTKGSLTPPTLSAGRGDGRQNPSPDWCLKEARTSICYAAAGFPPSQQERGEGPG
Sbjct: 1 MTPQASSTKGSLTPPTLSAGRGDGRQNPSPDWCLKEARTSICYAAAGFPPSQQERGEGPG 60
Query: 61 RKALQGHVVEGLHGTPGQQLLVQQLVGRLLEGIGGVHVGPCFDQGIHDGRAVVLGCYVHV 120
RKALQGHVVEGLHGTPGQQLLVQQLVGRLLEGIGGVHVGPCFDQGIHDGRAVVLGCYVHV
Sbjct: 61 RKALQGHVVEGLHGTPGQQLLVQQLVGRLLEGIGGVHVGPCFDQGIHDGRAVVLGCYVHV 120
Query: 121 QRGEAVLAPGRALEQAVDGLVLQLQGPFHFPDPFGENPHEVCKADLGAQAAFGGPVLKHV 180
QRGEAVLAPGRALEQAVDGLVLQLQGPFHFPDPFGENPHEVCKADLGAQAAFGGPVLKHV
Sbjct: 121 QRGEAVLAPGRALEQAVDGLVLQLQGPFHFPDPFGENPHEVCKADLGAQAAFGGPVLKHV 180
Query: 181 GEEFREGEEAAGGHGAQRLQVALLHVQGVLPQADAALEIARVGVHGTPVTDVIGSVRVRG 240
GEEFREGEEAAGGHGAQRLQVALLHVQGVLPQADAALEIARVGVHGTPVTDVIGSVRVRG
Sbjct: 181 GEEFREGEEAAGGHGAQRLQVALLHVQGVLPQADAALEIARVGVHGTPVTDVIGSVRVRG 240
Query: 241 TEDALPDQQGLHAHLIRVGDQRLQLLGGVDLPGIVIGQDQLWGLRFGQVLAPLVTQLHGP 300
TEDALPDQQGLHAHLIRVGDQRLQLLGGVDLPGIVIGQDQLWGLRFGQVLAPLVTQLHGP
Sbjct: 241 TEDALPDQQGLHAHLIRVGDQRLQLLGGVDLPGIVIGQDQLWGLRFGQVLAPLVTQLHGP 300
Query: 301 PPVFKGPKQISFLIHIRSSQQFQGFHGSFPAGGTAAFVRFPVQWFLWGGAAARSPLRLRT 360
PPVFKGPKQISFLIHIRSSQQFQGFHGSFPAGGTAAFVRFPVQWFLWGGAAARSPLRLRT
Sbjct: 301 PPVFKGPKQISFLIHIRSSQQFQGFHGSFPAGGTAAFVRFPVQWFLWGGAAARSPLRLRT 360
Query: 361 PLAGGGVFLGQPRLSLSPCDLLLAGLLLDEVLHDVGVARHAGREQRGHAVAVTFHAGLAP 420
PLAGGGVFLGQPRLSLSPCDLLLAGLLLDEVLHDVGVARHAGREQRGHAVAVTFHAGLAP
Sbjct: 361 PLAGGGVFLGQPRLSLSPCDLLLAGLLLDEVLHDVGVARHAGREQRGHAVAVTFHAGLAP 420
Query: 421 QQQLQDLQAAGLGAVMQGRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVAVPVGHL 480
QQQLQDLQAAGLGAVMQGRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVAVPVGHL
Sbjct: 421 QQQLQDLQAAGLGAVMQGRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVAVPVGHL 480
Query: 481 QVGLVLADQVAVAGGDE 497
QVGLVLADQVAVAGGDE
Sbjct: 481 QVGLVLADQVAVAGGDE 497
>gi|169211438 PREDICTED: hypothetical protein [Homo sapiens]
Length = 200
Score = 35.0 bits (79), Expect = 0.16
Identities = 32/88 (36%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
Query: 300 PPPVFKGPKQISFLIHIRSSQQFQG--FHGSFPAGGTAAFVRFPVQWFLWGGAAAR---- 353
PPP+ GP+ +Q +G G P A FP L GG A+R
Sbjct: 35 PPPLPPGPQAWR-------GEQRRGRPLLGRAPRASVPAPRAFPNLVTLGGGCASRPSPS 87
Query: 354 SPLRLRTPLAGGGVFLGQPRLSLSPCDL 381
S LR+R AG G G P SL PCDL
Sbjct: 88 SALRVRAGWAGRGAIAGSP--SLRPCDL 113
>gi|169211910 PREDICTED: hypothetical protein [Homo sapiens]
Length = 200
Score = 35.0 bits (79), Expect = 0.16
Identities = 32/88 (36%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
Query: 300 PPPVFKGPKQISFLIHIRSSQQFQG--FHGSFPAGGTAAFVRFPVQWFLWGGAAAR---- 353
PPP+ GP+ +Q +G G P A FP L GG A+R
Sbjct: 35 PPPLPPGPQAWR-------GEQRRGRPLLGRAPRASVPAPRAFPNLVTLGGGCASRPSPS 87
Query: 354 SPLRLRTPLAGGGVFLGQPRLSLSPCDL 381
S LR+R AG G G P SL PCDL
Sbjct: 88 SALRVRAGWAGRGAIAGSP--SLRPCDL 113
>gi|169211055 PREDICTED: hypothetical protein [Homo sapiens]
Length = 200
Score = 35.0 bits (79), Expect = 0.16
Identities = 32/88 (36%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
Query: 300 PPPVFKGPKQISFLIHIRSSQQFQG--FHGSFPAGGTAAFVRFPVQWFLWGGAAAR---- 353
PPP+ GP+ +Q +G G P A FP L GG A+R
Sbjct: 35 PPPLPPGPQAWR-------GEQRRGRPLLGRAPRASVPAPRAFPNLVTLGGGCASRPSPS 87
Query: 354 SPLRLRTPLAGGGVFLGQPRLSLSPCDL 381
S LR+R AG G G P SL PCDL
Sbjct: 88 SALRVRAGWAGRGAIAGSP--SLRPCDL 113
>gi|239755957 PREDICTED: hypothetical protein [Homo sapiens]
Length = 187
Score = 31.6 bits (70), Expect = 1.7
Identities = 37/118 (31%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 381 LLLAGLLLDEVLHDVGVARHAGREQRGHAVAVTFHAGLA---PQQQLQDLQAAGLGAVMQ 437
LL A L L G+ H G Q H + H LA ++LQ L G AV
Sbjct: 32 LLCAPAALQHALR--GITLHNGHHQADHLPDLMHHEALALHPDHRKLQALPHKGFLAVHL 89
Query: 438 GRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVAVPVGHLQVGLVLADQVAVAGG 495
VA G L LL+ ++ ALVA + +G VGL+L V V G
Sbjct: 90 QDVAAGTG--ILRPLLRGEIVEVVRALVAGQEPVDLLQRLGAQAVGLILNVPVLVRKG 145
>gi|239753144 PREDICTED: hypothetical protein [Homo sapiens]
Length = 407
Score = 31.6 bits (70), Expect = 1.7
Identities = 36/105 (34%), Positives = 42/105 (40%), Gaps = 15/105 (14%)
Query: 393 HDVGVARHAGREQRGH--AVAVTFH------AGLAPQQQLQDLQAAGLGAVMQGRVALGA 444
HDVG H G+ R AV H A LA L+DL AA L A+G
Sbjct: 228 HDVGHG-HDGQRPRVEEGAVRAAAHQQRHQLARLAQHVALEDLAAARLAREEVAHHAVGC 286
Query: 445 APVHLGALLQQVAGDLTVALVARDHEARVAVPVGH----LQVGLV 485
AP+HL L +V + A E PVG L GLV
Sbjct: 287 APLHLPVL--RVVAESHAAAAGHHTEGGEGRPVGEGRALLHQGLV 329
>gi|239750477 PREDICTED: hypothetical protein [Homo sapiens]
Length = 187
Score = 31.6 bits (70), Expect = 1.7
Identities = 37/118 (31%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 381 LLLAGLLLDEVLHDVGVARHAGREQRGHAVAVTFHAGLA---PQQQLQDLQAAGLGAVMQ 437
LL A L L G+ H G Q H + H LA ++LQ L G AV
Sbjct: 32 LLCAPAALQHALR--GITLHNGHHQADHLPDLMHHEALALHPDHRKLQALPHKGFLAVHL 89
Query: 438 GRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVAVPVGHLQVGLVLADQVAVAGG 495
VA G L LL+ ++ ALVA + +G VGL+L V V G
Sbjct: 90 QDVAAGTG--ILRPLLRGEIVEVVRALVAGQEPVDLLQRLGAQAVGLILNVPVLVRKG 145
>gi|239747710 PREDICTED: hypothetical protein XP_002348232 [Homo
sapiens]
Length = 407
Score = 31.6 bits (70), Expect = 1.7
Identities = 36/105 (34%), Positives = 42/105 (40%), Gaps = 15/105 (14%)
Query: 393 HDVGVARHAGREQRGH--AVAVTFH------AGLAPQQQLQDLQAAGLGAVMQGRVALGA 444
HDVG H G+ R AV H A LA L+DL AA L A+G
Sbjct: 228 HDVGHG-HDGQRPRVEEGAVRAAAHQQRHQLARLAQHVALEDLAAARLAREEVAHHAVGC 286
Query: 445 APVHLGALLQQVAGDLTVALVARDHEARVAVPVGH----LQVGLV 485
AP+HL L +V + A E PVG L GLV
Sbjct: 287 APLHLPVL--RVVAESHAAAAGHHTEGGEGRPVGEGRALLHQGLV 329
>gi|239744773 PREDICTED: hypothetical protein XP_002343267 [Homo
sapiens]
Length = 187
Score = 31.6 bits (70), Expect = 1.7
Identities = 37/118 (31%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 381 LLLAGLLLDEVLHDVGVARHAGREQRGHAVAVTFHAGLA---PQQQLQDLQAAGLGAVMQ 437
LL A L L G+ H G Q H + H LA ++LQ L G AV
Sbjct: 32 LLCAPAALQHALR--GITLHNGHHQADHLPDLMHHEALALHPDHRKLQALPHKGFLAVHL 89
Query: 438 GRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVAVPVGHLQVGLVLADQVAVAGG 495
VA G L LL+ ++ ALVA + +G VGL+L V V G
Sbjct: 90 QDVAAGTG--ILRPLLRGEIVEVVRALVAGQEPVDLLQRLGAQAVGLILNVPVLVRKG 145
>gi|239741576 PREDICTED: hypothetical protein XP_002342255 [Homo
sapiens]
Length = 407
Score = 31.6 bits (70), Expect = 1.7
Identities = 36/105 (34%), Positives = 42/105 (40%), Gaps = 15/105 (14%)
Query: 393 HDVGVARHAGREQRGH--AVAVTFH------AGLAPQQQLQDLQAAGLGAVMQGRVALGA 444
HDVG H G+ R AV H A LA L+DL AA L A+G
Sbjct: 228 HDVGHG-HDGQRPRVEEGAVRAAAHQQRHQLARLAQHVALEDLAAARLAREEVAHHAVGC 286
Query: 445 APVHLGALLQQVAGDLTVALVARDHEARVAVPVGH----LQVGLV 485
AP+HL L +V + A E PVG L GLV
Sbjct: 287 APLHLPVL--RVVAESHAAAAGHHTEGGEGRPVGEGRALLHQGLV 329
>gi|4508029 zinc finger protein 45 [Homo sapiens]
Length = 682
Score = 31.2 bits (69), Expect = 2.3
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 147 PFHFPDPFGENPH--EVCKADLGAQAAFGGPVLKHVGEEFREGEEAAGGHGAQR-LQVAL 203
P H P GENP+ E C ++G + P++ H GE+ + EE G + LQV L
Sbjct: 236 PHHQRVPTGENPYKYEECGRNVGKSSHCQAPLIVHTGEKPYKCEECGVGFSQRSYLQVHL 295
>gi|4504347 alpha 1 globin [Homo sapiens]
Length = 142
Score = 30.8 bits (68), Expect = 3.0
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 191 AGGHGAQRLQVALLH---VQGVLPQADAALEIARVGVHGTPVTDVIGSV--RVRGTEDAL 245
AG +GA+ L+ L + P D + A+V HG V D + + V +AL
Sbjct: 22 AGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNAL 81
Query: 246 PDQQGLHAHLIRVGDQRLQLL 266
LHAH +RV +LL
Sbjct: 82 SALSDLHAHKLRVDPVNFKLL 102
>gi|239755536 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 30.8 bits (68), Expect = 3.0
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 415 HAGLAPQQQLQDLQAAGLGAVMQGRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVA 474
H L PQ + Q QAA L + G + P ALL G + + +V HE V
Sbjct: 85 HGELLPQGEAQ--QAANLAPLPLGAAPVVTHPEEQLALL----GVIVLLIVPIGHEVVVQ 138
Query: 475 VPVGHLQV 482
P+GHL V
Sbjct: 139 SPIGHLWV 146
>gi|239749998 PREDICTED: hypothetical protein XP_002347249 [Homo
sapiens]
Length = 219
Score = 30.8 bits (68), Expect = 3.0
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 415 HAGLAPQQQLQDLQAAGLGAVMQGRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVA 474
H L PQ + Q QAA L + G + P ALL G + + +V HE V
Sbjct: 85 HGELLPQGEAQ--QAANLAPLPLGAAPVVTHPEEQLALL----GVIVLLIVPIGHEVVVQ 138
Query: 475 VPVGHLQV 482
P+GHL V
Sbjct: 139 SPIGHLWV 146
>gi|239744309 PREDICTED: hypothetical protein XP_002343114 [Homo
sapiens]
Length = 219
Score = 30.8 bits (68), Expect = 3.0
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 415 HAGLAPQQQLQDLQAAGLGAVMQGRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVA 474
H L PQ + Q QAA L + G + P ALL G + + +V HE V
Sbjct: 85 HGELLPQGEAQ--QAANLAPLPLGAAPVVTHPEEQLALL----GVIVLLIVPIGHEVVVQ 138
Query: 475 VPVGHLQV 482
P+GHL V
Sbjct: 139 SPIGHLWV 146
>gi|4504345 alpha 2 globin [Homo sapiens]
Length = 142
Score = 30.8 bits (68), Expect = 3.0
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 191 AGGHGAQRLQVALLH---VQGVLPQADAALEIARVGVHGTPVTDVIGSV--RVRGTEDAL 245
AG +GA+ L+ L + P D + A+V HG V D + + V +AL
Sbjct: 22 AGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNAL 81
Query: 246 PDQQGLHAHLIRVGDQRLQLL 266
LHAH +RV +LL
Sbjct: 82 SALSDLHAHKLRVDPVNFKLL 102
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 30.8 bits (68), Expect = 3.0
Identities = 52/191 (27%), Positives = 65/191 (34%), Gaps = 24/191 (12%)
Query: 3 PQASSTKGSLTPPTLSAGRGDGRQNPSPDWCLKEARTSICYAAAGFPPSQQERGEGPGRK 62
P T G+ P LS G Q P+ K + C + G R PG K
Sbjct: 690 PGDPGTPGTTGRPGLSGE--PGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPK 747
Query: 63 ALQGHVVEGLHGTPGQQLLVQQLVGRLLEGIGGVHVGPCFDQGIHDGRAVVLGCYVHVQR 122
QG G G PGQ G+ GV GP +G+ G G V +
Sbjct: 748 GEQGPEGVGRPGKPGQP------------GLPGVQ-GPPGLKGVQ-GEPGPPGRGVQGPQ 793
Query: 123 GEAVLAPGRALEQAVDGLVLQLQGPFHFPDPFGENPHEVCKADLGAQAAFGGPVLKHVGE 182
GE PG + GL GP P P GE + GA G P G
Sbjct: 794 GE----PGAPGLPGIQGL----PGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGP 845
Query: 183 EFREGEEAAGG 193
R+G++ G
Sbjct: 846 PGRDGQQGQTG 856
>gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo sapiens]
Length = 1555
Score = 30.8 bits (68), Expect = 3.0
Identities = 48/196 (24%), Positives = 66/196 (33%), Gaps = 33/196 (16%)
Query: 15 PTLSAGRGDGRQNPSPDWCLKEARTSICYAAAGFPPSQQERGEGPGRKALQGHVVEGLHG 74
P AG G R SP + + + + G P R EG + + G EG HG
Sbjct: 837 PIGQAGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHG 896
Query: 75 TPGQQLLVQQLVGRLLEGIGGVHVGPCFDQGIHDGRAVVLGCYVHVQRGEAVLAPGRALE 134
P L G + +GG+ F+ G A + H Q G + G L+
Sbjct: 897 QPVGGLRFDNPRG---QPVGGLR----FEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQ 949
Query: 135 QAV-----------------DGLVLQLQGPFHFPDPFGENPHEVCKADLGAQAAFGGPVL 177
Q V +G QL G F P G+ G F GP++
Sbjct: 950 QGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQP---------GVGIRFEGPLV 1000
Query: 178 KHVGEEFREGEEAAGG 193
+ G EG GG
Sbjct: 1001 QQGGGMRFEGPSVPGG 1016
>gi|239757714 PREDICTED: hypothetical protein XP_002345529 [Homo
sapiens]
Length = 764
Score = 30.4 bits (67), Expect = 3.9
Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 20/114 (17%)
Query: 392 LHDVGVARHAG-----------REQRGHAVAVTFHAGLAPQQQLQ----DLQAAGLGA-- 434
+HD G+ H G R + VT G P+++ + D + G
Sbjct: 346 VHDAGLGGHRGCSATTRRRAPRRRHPWAGLQVTVEEGDTPEEEAEKEPGDKEGRGEDHEH 405
Query: 435 VMQGRVALGAAPV-HLGALLQQVAGDLTVALVARDHEARVAVPVGHLQVGLVLA 487
V RV G V H+ L G++ VAL EA A+P GH VGL +A
Sbjct: 406 VAPARVHAGGEDVRHVALRLVAQVGEVHVALAVLLDEAVAALPPGH--VGLAVA 457
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 30.0 bits (66), Expect = 5.1
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 3 PQASSTKGSLTPPTLSAGRGDGRQNPSPDWCLKEARTSICYAA-AGFPPSQQERGEGPGR 61
P + GS PP + G QN SP + + ++ + AG+P G PG
Sbjct: 126 PGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGP-PGP 184
Query: 62 KALQGHVVEGLHGTPGQQ 79
GH G G+PG Q
Sbjct: 185 PGTSGH--PGSPGSPGYQ 200
>gi|150417973 supervillin isoform 2 [Homo sapiens]
Length = 2214
Score = 29.6 bits (65), Expect = 6.6
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 14/58 (24%)
Query: 5 ASSTKGSLTPPTLSAGRGDGRQNPSPDWCLKEARTSICYAAAGFPPSQQERGEGPGRK 62
AS+T+ PP+L+ GDGR +P C +A ++E GEG G +
Sbjct: 395 ASATQNVPKPPSLTVLEGDGRDSPVLHVCESKA--------------EEEEGEGEGEE 438
>gi|148276998 zinc finger protein 628 [Homo sapiens]
Length = 1055
Score = 29.6 bits (65), Expect = 6.6
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 19/86 (22%)
Query: 15 PTLSAGRGDGRQNPSPDWCLKEARTSICYAAAGFPPSQQERGEGPGRKALQGHVVEGLHG 74
P+ SAG G GR P K + + P GPG +QG G G
Sbjct: 742 PSSSAGAGGGRARQGPRAVGKAGQGA---GVVWLP--------GPGGLGVQGAASAGASG 790
Query: 75 TPGQQLLVQQLVGRLLEGIGGVHVGP 100
T GQ L+V L+ +GG GP
Sbjct: 791 T-GQSLIV-------LQNVGGGEAGP 808
>gi|22094125 zinc finger protein 28 [Homo sapiens]
Length = 868
Score = 29.3 bits (64), Expect = 8.7
Identities = 33/107 (30%), Positives = 42/107 (39%), Gaps = 10/107 (9%)
Query: 351 AARSPLRLRTPLAGGGVFLGQPRLSLSPCDLLLAGLLLDEVLHDVGVARHAGREQRGHAV 410
AA + +R TPL G G +PR P A L L A + QRG A
Sbjct: 4 AASASVREPTPLPGRGAPRTKPRAGRGPTVGTPATLALPARGRPRSRNGLASKGQRGAAP 63
Query: 411 AVTFHAGL------APQQQLQDLQAAGLG----AVMQGRVALGAAPV 447
H L PQ++ + L+A G G A+ QG V G V
Sbjct: 64 TGPGHRALPSRDTALPQERNKKLEAVGTGIEPKAMSQGLVTFGDVAV 110
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.141 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,380,424
Number of Sequences: 37866
Number of extensions: 1106854
Number of successful extensions: 2225
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2209
Number of HSP's gapped (non-prelim): 30
length of query: 497
length of database: 18,247,518
effective HSP length: 106
effective length of query: 391
effective length of database: 14,233,722
effective search space: 5565385302
effective search space used: 5565385302
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.