Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292415 Sequence: fasta or formatted (187aa) NCBI GI: 239755957
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         21           2
 C cysteine            0.5          1           1
 D aspartate           4.3          8           1
 E glutamate           3.2          6           1
 F phenylalanine       1.1          2           1
 G glycine             9.1         17           1
 H histidine           7.5         14           2
 I isoleucine          3.7          7           1
 K lysine              3.7          7           1
 L leucine            17.1         32           2
 M methionine          1.1          2           1
 N asparagine          2.1          4           1
 P proline             7.0         13           1
 Q glutamine           7.5         14           2
 R arginine            5.9         11           1
 S serine              1.1          2           1
 T threonine           2.1          4           1
 V valine             11.8         22           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288577          1.000   PREDICTED: hypothetical protein 
LOC100288577          1.000   PREDICTED: hypothetical protein XP_002343267 
LOC100133070          0.020   PREDICTED: hypothetical protein 
LOC100133070          0.020   PREDICTED: hypothetical protein 
LOC100133070          0.020   PREDICTED: hypothetical protein 
ANKRD52               0.017   ankyrin repeat domain 52 
CATSPER1              0.014   sperm-associated cation channel 1 
ZNF197                0.012   zinc finger protein 197 isoform 1 
ZNF197                0.012   zinc finger protein 197 isoform 2 
NFKBIL2               0.012   NF-kappa-B inhibitor-like protein 2 
LOC100293652          0.009   PREDICTED: hypothetical protein 
LOC100291016          0.009   PREDICTED: hypothetical protein XP_002347804 
LOC100287809          0.009   PREDICTED: hypothetical protein XP_002343597 
MFHAS1                0.009   malignant fibrous histiocytoma amplified sequence 1...
LOC100293513          0.006   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press