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Search of human proteins with 119709830
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|119709830 carbohydrate kinase domain containing [Homo
sapiens]
(390 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|119709830 carbohydrate kinase domain containing [Homo sapiens] 779 0.0
gi|209977080 REST corepressor 3 isoform a [Homo sapiens] 33 0.34
gi|8922733 REST corepressor 3 isoform d [Homo sapiens] 33 0.34
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens] 33 0.58
gi|169214023 PREDICTED: hypothetical protein [Homo sapiens] 32 0.75
gi|169214468 PREDICTED: hypothetical protein [Homo sapiens] 32 0.75
gi|22538453 phosphatidylinositol glycan anchor biosynthesis, cla... 32 0.98
gi|194097398 protein tyrosine phosphatase, receptor type, G prec... 32 1.3
gi|239753316 PREDICTED: similar to Rho guanine nucleotide exchan... 31 1.7
gi|239754054 PREDICTED: ankyrin repeat domain 31 [Homo sapiens] 31 2.2
gi|239748581 PREDICTED: ankyrin repeat domain 31 [Homo sapiens] 31 2.2
gi|239742600 PREDICTED: ankyrin repeat domain 31 [Homo sapiens] 31 2.2
gi|157426823 NK2 homeobox 4 [Homo sapiens] 31 2.2
gi|32813445 zinc finger and SCAN domain containing 22 [Homo sapi... 30 2.9
gi|169171308 PREDICTED: hypothetical protein [Homo sapiens] 30 2.9
gi|89025853 PREDICTED: hypothetical protein [Homo sapiens] 30 2.9
gi|42657886 PREDICTED: hypothetical protein [Homo sapiens] 30 2.9
gi|42658266 PREDICTED: hypothetical protein [Homo sapiens] 30 2.9
gi|4758476 GRB2-related adaptor protein 2 [Homo sapiens] 30 4.9
gi|238908524 hypothetical protein LOC389333 [Homo sapiens] 29 6.4
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens] 29 6.4
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens] 29 6.4
gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens] 29 6.4
gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens] 29 6.4
gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens] 29 6.4
gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens] 29 6.4
gi|130502140 NEZHA isoform 2 [Homo sapiens] 29 6.4
gi|122937255 NEZHA isoform 1 [Homo sapiens] 29 6.4
gi|209413756 synapsin III isoform IIIg [Homo sapiens] 29 6.4
gi|209413752 synapsin III isoform IIIa [Homo sapiens] 29 6.4
>gi|119709830 carbohydrate kinase domain containing [Homo sapiens]
Length = 390
Score = 779 bits (2012), Expect = 0.0
Identities = 390/390 (100%), Positives = 390/390 (100%)
Query: 1 MVTRAGAGTAVAGAVVVALLSAALALYGPPLDAVLERAFSLRKAHSIKDMENTLQLVRNI 60
MVTRAGAGTAVAGAVVVALLSAALALYGPPLDAVLERAFSLRKAHSIKDMENTLQLVRNI
Sbjct: 1 MVTRAGAGTAVAGAVVVALLSAALALYGPPLDAVLERAFSLRKAHSIKDMENTLQLVRNI 60
Query: 61 IPPLSSTKHKGQDGRIGVVGGCQEYTGAPYFAAISALKVGADLSHVFCASAAAPVIKAYS 120
IPPLSSTKHKGQDGRIGVVGGCQEYTGAPYFAAISALKVGADLSHVFCASAAAPVIKAYS
Sbjct: 61 IPPLSSTKHKGQDGRIGVVGGCQEYTGAPYFAAISALKVGADLSHVFCASAAAPVIKAYS 120
Query: 121 PELIVHPVLDSPNAVHEVEKWLPRLHALVVGPGLGRDDALLRNVQGILEVSKARDIPVVI 180
PELIVHPVLDSPNAVHEVEKWLPRLHALVVGPGLGRDDALLRNVQGILEVSKARDIPVVI
Sbjct: 121 PELIVHPVLDSPNAVHEVEKWLPRLHALVVGPGLGRDDALLRNVQGILEVSKARDIPVVI 180
Query: 181 DADGLWLVAQQPALIHGYRKAVLTPNHVEFSRLYDAVLRGPMDSDDSHGSVLRLSQALGN 240
DADGLWLVAQQPALIHGYRKAVLTPNHVEFSRLYDAVLRGPMDSDDSHGSVLRLSQALGN
Sbjct: 181 DADGLWLVAQQPALIHGYRKAVLTPNHVEFSRLYDAVLRGPMDSDDSHGSVLRLSQALGN 240
Query: 241 VTVVQKGERDILSNGQQVLVCSQEGSSRRCGGQGDLLSGSLGVLVHWALLAGPQKTNGGI 300
VTVVQKGERDILSNGQQVLVCSQEGSSRRCGGQGDLLSGSLGVLVHWALLAGPQKTNGGI
Sbjct: 241 VTVVQKGERDILSNGQQVLVCSQEGSSRRCGGQGDLLSGSLGVLVHWALLAGPQKTNGGI 300
Query: 301 SDLKLTIWGPEIETGVKTRAQGSCGPRTTTPTSPHLLLSPSPQVQPSPGGRVWRLLSHQA 360
SDLKLTIWGPEIETGVKTRAQGSCGPRTTTPTSPHLLLSPSPQVQPSPGGRVWRLLSHQA
Sbjct: 301 SDLKLTIWGPEIETGVKTRAQGSCGPRTTTPTSPHLLLSPSPQVQPSPGGRVWRLLSHQA 360
Query: 361 VQPPSLPEARSLHHHLRHDRRGGGRLQQAL 390
VQPPSLPEARSLHHHLRHDRRGGGRLQQAL
Sbjct: 361 VQPPSLPEARSLHHHLRHDRRGGGRLQQAL 390
>gi|209977080 REST corepressor 3 isoform a [Homo sapiens]
Length = 553
Score = 33.5 bits (75), Expect = 0.34
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 283 VLVHWALLAGPQKTNGGISDL-KLTIWGPEIETGVKT----RAQGSCGPRTTTPTSPHLL 337
VL W G Q +NG S L + T + +G T AQ PRT P+ P
Sbjct: 398 VLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQAPRTLGPSPP--- 454
Query: 338 LSPSPQVQPSPGGRVWRLLSHQAVQPPSLPEARSLH 373
+P P+P + L + P+LP A +LH
Sbjct: 455 ---APSSTPTPTAPIATLNQPPPLLRPTLPAAPALH 487
>gi|8922733 REST corepressor 3 isoform d [Homo sapiens]
Length = 495
Score = 33.5 bits (75), Expect = 0.34
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 283 VLVHWALLAGPQKTNGGISDL-KLTIWGPEIETGVKT----RAQGSCGPRTTTPTSPHLL 337
VL W G Q +NG S L + T + +G T AQ PRT P+ P
Sbjct: 340 VLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQAPRTLGPSPP--- 396
Query: 338 LSPSPQVQPSPGGRVWRLLSHQAVQPPSLPEARSLH 373
+P P+P + L + P+LP A +LH
Sbjct: 397 ---APSSTPTPTAPIATLNQPPPLLRPTLPAAPALH 429
>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
Length = 1374
Score = 32.7 bits (73), Expect = 0.58
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 285 VHWALLAGPQKTNGGISDLKLTIWGPEIETGVKTRAQGSCGPRTTTPTSPHLLLSPSPQV 344
VH LL Q +G + L +TIW E G + Q S L P PQ+
Sbjct: 305 VHSNLLVVDQTKSGNVWSLGVTIW-ELFELGTQPYPQHSDQQVLAYTVREQQLKLPKPQL 363
Query: 345 QPSPGGRVWRLLSHQAVQPPSLPEARSLH 373
Q + R + ++ +QP P A +H
Sbjct: 364 QLTLSDRWYEVMQFCWLQPEQRPTAEEVH 392
Score = 29.3 bits (64), Expect = 6.4
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 310 PEIETGVKTRAQGSCGPRTTTPTSPHLLLSPSPQVQPSP 348
P+ E + T A+G+ GPR P+ P SPS + P P
Sbjct: 776 PQAEPKLATEAEGTTGPRLPLPSVP----SPSQEGAPLP 810
>gi|169214023 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 32.3 bits (72), Expect = 0.75
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 285 VHWALLAGPQKT-NGGISDLKLTIWGPEIETG--VKTRAQGSCGPRTTTPTSPHLLLSPS 341
+H +LL G Q+ G ++ P G ++ R Q P + P +PH + P
Sbjct: 19 LHSSLLQGQQRLLRGEEGSFSHELFRPAHRPGPALRPRPQPKAPPSSAAPPTPHSSIPPR 78
Query: 342 PQVQPSP-GGRVWRLLSHQ 359
P PSP G RVW +H+
Sbjct: 79 P---PSPWGPRVWGAPTHR 94
>gi|169214468 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 32.3 bits (72), Expect = 0.75
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 285 VHWALLAGPQKT-NGGISDLKLTIWGPEIETG--VKTRAQGSCGPRTTTPTSPHLLLSPS 341
+H +LL G Q+ G ++ P G ++ R Q P + P +PH + P
Sbjct: 19 LHSSLLQGQQRLLRGEEGSFSHELFRPAHRPGPALRPRPQPKAPPSSAAPPTPHSSIPPR 78
Query: 342 PQVQPSP-GGRVWRLLSHQ 359
P PSP G RVW +H+
Sbjct: 79 P---PSPWGPRVWGAPTHR 94
>gi|22538453 phosphatidylinositol glycan anchor biosynthesis, class
Q isoform 1 [Homo sapiens]
Length = 760
Score = 32.0 bits (71), Expect = 0.98
Identities = 21/66 (31%), Positives = 27/66 (40%)
Query: 308 WGPEIETGVKTRAQGSCGPRTTTPTSPHLLLSPSPQVQPSPGGRVWRLLSHQAVQPPSLP 367
W P A G GP P SP L+PS + P+ GG L + PSLP
Sbjct: 685 WSPWGLPSGSALAVGVEGPCQDEPPSPRHPLAPSAEQHPASGGLKQSLTPVPSGPGPSLP 744
Query: 368 EARSLH 373
E ++
Sbjct: 745 EPHGVY 750
>gi|194097398 protein tyrosine phosphatase, receptor type, G
precursor [Homo sapiens]
Length = 1445
Score = 31.6 bits (70), Expect = 1.3
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 272 GQGDLLSGS---LGVLVHWALLAGPQKTNGGISDLKLTIWGPEIETGVKTRAQGSCGPRT 328
G G SGS + +V LLAG GGIS T+W + T Q +
Sbjct: 495 GMGPSSSGSQATVASVVTSTLLAGLGFGGGGISSFPSTVWPTRLPTAASASKQAARPVLA 554
Query: 329 TTPTSPHLLLSPSPQVQPSP 348
TT L SP P SP
Sbjct: 555 TT----EALASPGPDGDSSP 570
>gi|239753316 PREDICTED: similar to Rho guanine nucleotide exchange
factor 4 [Homo sapiens]
Length = 368
Score = 31.2 bits (69), Expect = 1.7
Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 6/106 (5%)
Query: 261 CSQEGSSRRCGGQGDLLSGSLGVLV-----HWALLAGPQKTNGGISDLKLTIWGPEIETG 315
C E S + G G S S G+ ++ G + NGG+ W E
Sbjct: 224 CPSESSGQTSGDLGTSSSSSAGLSPGSDSDSSGVVCGGRGGNGGMRGAVSRSWSLESLRS 283
Query: 316 VKTRAQGSCGPRTTTPTSPHLLLSPSPQVQPSPGGRVWRLLSHQAV 361
T + + P P++P L S P GR W L H AV
Sbjct: 284 A-TAGKDAAIPAPHAPSAPGCLASVKPGGWKGAAGRGWNGLRHLAV 328
>gi|239754054 PREDICTED: ankyrin repeat domain 31 [Homo sapiens]
Length = 1873
Score = 30.8 bits (68), Expect = 2.2
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 195 IHGYRKAVLTPNHVEFSRLYDAVLRGPMDSDDSHGSVLRLSQALGNVTVVQKGERDILSN 254
+H A+L + L + +R P D++ +L++ + + NV QK ERD L+
Sbjct: 1328 VHQTLSAILQDIEEKQEYLLEFEIRNPEDAEQYIEKMLKIKKIMDNVLAKQKAERDDLAK 1387
Query: 255 GQQVLV 260
+V +
Sbjct: 1388 KYRVSI 1393
>gi|239748581 PREDICTED: ankyrin repeat domain 31 [Homo sapiens]
Length = 1873
Score = 30.8 bits (68), Expect = 2.2
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 195 IHGYRKAVLTPNHVEFSRLYDAVLRGPMDSDDSHGSVLRLSQALGNVTVVQKGERDILSN 254
+H A+L + L + +R P D++ +L++ + + NV QK ERD L+
Sbjct: 1328 VHQTLSAILQDIEEKQEYLLEFEIRNPEDAEQYIEKMLKIKKIMDNVLAKQKAERDDLAK 1387
Query: 255 GQQVLV 260
+V +
Sbjct: 1388 KYRVSI 1393
>gi|239742600 PREDICTED: ankyrin repeat domain 31 [Homo sapiens]
Length = 1873
Score = 30.8 bits (68), Expect = 2.2
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 195 IHGYRKAVLTPNHVEFSRLYDAVLRGPMDSDDSHGSVLRLSQALGNVTVVQKGERDILSN 254
+H A+L + L + +R P D++ +L++ + + NV QK ERD L+
Sbjct: 1328 VHQTLSAILQDIEEKQEYLLEFEIRNPEDAEQYIEKMLKIKKIMDNVLAKQKAERDDLAK 1387
Query: 255 GQQVLV 260
+V +
Sbjct: 1388 KYRVSI 1393
>gi|157426823 NK2 homeobox 4 [Homo sapiens]
Length = 354
Score = 30.8 bits (68), Expect = 2.2
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 309 GPEIETGVKTRAQGSCGPRTTTPT-SPHLL-LSPSPQVQPSPGG 350
G + G T G GP+ PT +P L LSPSP PGG
Sbjct: 284 GKPCQNGASTPTPGQAGPQPPAPTPAPELEELSPSPPALHGPGG 327
>gi|32813445 zinc finger and SCAN domain containing 22 [Homo
sapiens]
Length = 491
Score = 30.4 bits (67), Expect = 2.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 258 VLVCSQEGSSRRCGGQGDLLSGSLGVLVHWALLAGPQK 295
V C EGSS R G G++ + S+ +H+ +GP K
Sbjct: 175 VKACEPEGSSERSGLSGEIWTKSVTQQIHFKKTSGPYK 212
>gi|169171308 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 30.4 bits (67), Expect = 2.9
Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 319 RAQGSCGPRTTTPTSPHLLLSPSPQVQPSPGGRVWRLLSHQAVQPP--SLPEARSLHH 374
RA S G T +P P L P +V P P R L VQPP S P R HH
Sbjct: 42 RAASSEGSPTHSPPHPPQRLQPPVRVVPKP-TRALSTLRQLHVQPPTRSQPHWRRTHH 98
>gi|89025853 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 30.4 bits (67), Expect = 2.9
Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 319 RAQGSCGPRTTTPTSPHLLLSPSPQVQPSPGGRVWRLLSHQAVQPP--SLPEARSLHH 374
RA S G T +P P L P +V P P R L VQPP S P R HH
Sbjct: 42 RAASSEGSPTHSPPHPPQRLQPPVRVVPKP-TRALSTLRQLHVQPPTRSQPHWRRTHH 98
>gi|42657886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 30.4 bits (67), Expect = 2.9
Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 319 RAQGSCGPRTTTPTSPHLLLSPSPQVQPSPGGRVWRLLSHQAVQPP--SLPEARSLHH 374
RA S G T +P P L P +V P P R L VQPP S P R HH
Sbjct: 42 RAASSEGSPTHSPPHPPQRLQPPVRVVPKP-TRALSTLRQLHVQPPTRSQPHWRRTHH 98
>gi|42658266 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 30.4 bits (67), Expect = 2.9
Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 319 RAQGSCGPRTTTPTSPHLLLSPSPQVQPSPGGRVWRLLSHQAVQPP--SLPEARSLHH 374
RA S G T +P P L P +V P P R L VQPP S P R HH
Sbjct: 42 RAASSEGSPTHSPPHPPQRLQPPVRVVPKP-TRALSTLRQLHVQPPTRSQPHWRRTHH 98
>gi|4758476 GRB2-related adaptor protein 2 [Homo sapiens]
Length = 330
Score = 29.6 bits (65), Expect = 4.9
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 12/58 (20%)
Query: 329 TTPTSPHLLLSPSPQVQPSPGGRVWRLLSHQAVQPPSLPEARSLHHHLRHDRRGGGRL 386
T P H PQ P+P Q +Q P P+ R L HH H R GG L
Sbjct: 192 TLPLQQHQHQPQPPQYAPAP----------QQLQQP--PQQRYLQHHHFHQERRGGSL 237
>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
Length = 1015
Score = 29.3 bits (64), Expect = 6.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 322 GSCGPRTTTPTSPHLLLSPSPQVQPSP 348
G G R+ P SP + SPSP + P P
Sbjct: 792 GPAGVRSPRPGSPQMQASPSPGIAPKP 818
>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2852
Score = 29.3 bits (64), Expect = 6.4
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 310 PEIETGVKTRAQGSCGPRTTTPTSPHLLLSPSPQVQPSPGG---RVWRLLSHQAVQPPSL 366
P + V R GS P TTP P L SPS + SPG SH+AV P++
Sbjct: 1553 PLMTKAVTVRGHGSL-PVRTTPPQPSLTASPSSRPVASPGAISRSPTSSGSHKAVLTPAV 1611
Query: 367 PEARS 371
+ S
Sbjct: 1612 TKVIS 1616
>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2924
Score = 29.3 bits (64), Expect = 6.4
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 310 PEIETGVKTRAQGSCGPRTTTPTSPHLLLSPSPQVQPSPGG---RVWRLLSHQAVQPPSL 366
P + V R GS P TTP P L SPS + SPG SH+AV P++
Sbjct: 1625 PLMTKAVTVRGHGSL-PVRTTPPQPSLTASPSSRPVASPGAISRSPTSSGSHKAVLTPAV 1683
Query: 367 PEARS 371
+ S
Sbjct: 1684 TKVIS 1688
>gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 29.3 bits (64), Expect = 6.4
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 310 PEIETGVKTRAQGSCGPRTTTPTSPHLLLSPSPQVQPSPGG---RVWRLLSHQAVQPPSL 366
P + V R GS P TTP P L SPS + SPG SH+AV P++
Sbjct: 1553 PLMTKAVTVRGHGSL-PVRTTPLQPSLTASPSSRPVASPGAISRSPTSSGSHKAVLTPAV 1611
Query: 367 PEARS 371
+ S
Sbjct: 1612 TKVIS 1616
>gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 29.3 bits (64), Expect = 6.4
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 310 PEIETGVKTRAQGSCGPRTTTPTSPHLLLSPSPQVQPSPGG---RVWRLLSHQAVQPPSL 366
P + V R GS P TTP P L SPS + SPG SH+AV P++
Sbjct: 1625 PLMTKAVTVRGHGSL-PVRTTPLQPSLTASPSSRPVASPGAISRSPTSSGSHKAVLTPAV 1683
Query: 367 PEARS 371
+ S
Sbjct: 1684 TKVIS 1688
>gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 29.3 bits (64), Expect = 6.4
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 310 PEIETGVKTRAQGSCGPRTTTPTSPHLLLSPSPQVQPSPGG---RVWRLLSHQAVQPPSL 366
P + V R GS P TTP P L SPS + SPG SH+AV P++
Sbjct: 1553 PLMTKAVTVRGHGSL-PVRTTPPQPSLTASPSSRPVASPGAISRSPTSSGSHKAVLTPAV 1611
Query: 367 PEARS 371
+ S
Sbjct: 1612 TKVIS 1616
>gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 29.3 bits (64), Expect = 6.4
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 310 PEIETGVKTRAQGSCGPRTTTPTSPHLLLSPSPQVQPSPGG---RVWRLLSHQAVQPPSL 366
P + V R GS P TTP P L SPS + SPG SH+AV P++
Sbjct: 1625 PLMTKAVTVRGHGSL-PVRTTPPQPSLTASPSSRPVASPGAISRSPTSSGSHKAVLTPAV 1683
Query: 367 PEARS 371
+ S
Sbjct: 1684 TKVIS 1688
>gi|130502140 NEZHA isoform 2 [Homo sapiens]
Length = 1249
Score = 29.3 bits (64), Expect = 6.4
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 288 ALLAGPQKTNGGISDLKLTIWGPEIETGVKTRAQGSCGPRTTTPTSPHLLLS 339
A+ + P TN S++K+T + + VK A+ G T+TP P L S
Sbjct: 550 AVASSPAATN---SEVKMTSFAERKKQLVKAEAEAGAGSPTSTPAPPEALSS 598
>gi|122937255 NEZHA isoform 1 [Homo sapiens]
Length = 1276
Score = 29.3 bits (64), Expect = 6.4
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 288 ALLAGPQKTNGGISDLKLTIWGPEIETGVKTRAQGSCGPRTTTPTSPHLLLS 339
A+ + P TN S++K+T + + VK A+ G T+TP P L S
Sbjct: 577 AVASSPAATN---SEVKMTSFAERKKQLVKAEAEAGAGSPTSTPAPPEALSS 625
>gi|209413756 synapsin III isoform IIIg [Homo sapiens]
Length = 579
Score = 29.3 bits (64), Expect = 6.4
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 298 GGISDLKLTIWGPEIETGVKTRAQGSCGPRTTTPT-------SPHLLLSPSPQVQPSPGG 350
GG + L W P+I++ K+ Q GP+ P P SP PQ SP
Sbjct: 399 GGTAPSPLRPWAPQIKSA-KSPGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQRSGSPS- 456
Query: 351 RVWRLLSHQAVQPPS 365
+ LS Q QP S
Sbjct: 457 --QQRLSPQGQQPLS 469
>gi|209413752 synapsin III isoform IIIa [Homo sapiens]
Length = 580
Score = 29.3 bits (64), Expect = 6.4
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 298 GGISDLKLTIWGPEIETGVKTRAQGSCGPRTTTPT-------SPHLLLSPSPQVQPSPGG 350
GG + L W P+I++ K+ Q GP+ P P SP PQ SP
Sbjct: 400 GGTAPSPLRPWAPQIKSA-KSPGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQRSGSPS- 457
Query: 351 RVWRLLSHQAVQPPS 365
+ LS Q QP S
Sbjct: 458 --QQRLSPQGQQPLS 470
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,550,009
Number of Sequences: 37866
Number of extensions: 832644
Number of successful extensions: 2743
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2720
Number of HSP's gapped (non-prelim): 49
length of query: 390
length of database: 18,247,518
effective HSP length: 104
effective length of query: 286
effective length of database: 14,309,454
effective search space: 4092503844
effective search space used: 4092503844
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.