Search of human proteins with 239756653

Search of human proteins with 239756653

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756653 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
         (158 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756653 PREDICTED: hypothetical protein isoform 2 [Homo sap...   344   2e-95
gi|239751136 PREDICTED: hypothetical protein XP_002347722 isofor...   344   2e-95
gi|239745629 PREDICTED: hypothetical protein XP_002344147 isofor...   344   2e-95
gi|239756651 PREDICTED: hypothetical protein isoform 1 [Homo sap...    43   1e-04
gi|239751134 PREDICTED: hypothetical protein XP_002347721 isofor...    43   1e-04
gi|239745627 PREDICTED: hypothetical protein XP_002344146 isofor...    43   1e-04
gi|239743055 PREDICTED: hypothetical protein XP_002342730 [Homo ...    33   0.10 
gi|33859670 leucine-rich repeats and calponin homology (CH) doma...    32   0.23 
gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homol...    32   0.29 
gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolo...    32   0.29 
gi|38327034 ubiquitination factor E4B isoform 2 [Homo sapiens]         32   0.29 
gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens]        32   0.29 
gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sap...    31   0.50 
gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens]    31   0.50 
gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens]      31   0.50 
gi|25014088 solute carrier family 34 (sodium phosphate), member ...    30   0.66 
gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]    30   0.66 
gi|239753369 PREDICTED: hypothetical protein LOC375295 [Homo sap...    30   0.86 
gi|239747936 PREDICTED: hypothetical protein LOC375295 [Homo sap...    30   0.86 
gi|239741831 PREDICTED: hypothetical protein [Homo sapiens]            30   0.86 
gi|5174711 T-box 1 isoform B [Homo sapiens]                            30   0.86 
gi|18104952 T-box 1 isoform C [Homo sapiens]                           30   0.86 
gi|18104950 T-box 1 isoform A [Homo sapiens]                           30   0.86 
gi|77681565 NG5 protein [Homo sapiens]                                 30   1.1  
gi|239753475 PREDICTED: hypothetical protein [Homo sapiens]            29   1.5  
gi|239748044 PREDICTED: hypothetical protein XP_002346500 [Homo ...    29   1.5  
gi|239741935 PREDICTED: hypothetical protein XP_002342357 [Homo ...    29   1.5  
gi|98986457 host cell factor 1 [Homo sapiens]                          29   1.5  
gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo ...    29   1.9  
gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo ...    29   1.9  

>gi|239756653 PREDICTED: hypothetical protein isoform 2 [Homo
           sapiens]
          Length = 158

 Score =  344 bits (882), Expect = 2e-95
 Identities = 158/158 (100%), Positives = 158/158 (100%)

Query: 1   MRASRSPPSPRRCHHHHEATGAASGAAAGGPGAGCVGLCRLALTPSAQDGRNSTFQTYKK 60
           MRASRSPPSPRRCHHHHEATGAASGAAAGGPGAGCVGLCRLALTPSAQDGRNSTFQTYKK
Sbjct: 1   MRASRSPPSPRRCHHHHEATGAASGAAAGGPGAGCVGLCRLALTPSAQDGRNSTFQTYKK 60

Query: 61  EVCLPRHSMHPGPWAICCECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQHPCWMHAAGT 120
           EVCLPRHSMHPGPWAICCECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQHPCWMHAAGT
Sbjct: 61  EVCLPRHSMHPGPWAICCECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQHPCWMHAAGT 120

Query: 121 TAGGSAVMSACCPSSSSSRPPTRTSYRLLQRVCCPSAS 158
           TAGGSAVMSACCPSSSSSRPPTRTSYRLLQRVCCPSAS
Sbjct: 121 TAGGSAVMSACCPSSSSSRPPTRTSYRLLQRVCCPSAS 158


>gi|239751136 PREDICTED: hypothetical protein XP_002347722 isoform 2
           [Homo sapiens]
          Length = 158

 Score =  344 bits (882), Expect = 2e-95
 Identities = 158/158 (100%), Positives = 158/158 (100%)

Query: 1   MRASRSPPSPRRCHHHHEATGAASGAAAGGPGAGCVGLCRLALTPSAQDGRNSTFQTYKK 60
           MRASRSPPSPRRCHHHHEATGAASGAAAGGPGAGCVGLCRLALTPSAQDGRNSTFQTYKK
Sbjct: 1   MRASRSPPSPRRCHHHHEATGAASGAAAGGPGAGCVGLCRLALTPSAQDGRNSTFQTYKK 60

Query: 61  EVCLPRHSMHPGPWAICCECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQHPCWMHAAGT 120
           EVCLPRHSMHPGPWAICCECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQHPCWMHAAGT
Sbjct: 61  EVCLPRHSMHPGPWAICCECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQHPCWMHAAGT 120

Query: 121 TAGGSAVMSACCPSSSSSRPPTRTSYRLLQRVCCPSAS 158
           TAGGSAVMSACCPSSSSSRPPTRTSYRLLQRVCCPSAS
Sbjct: 121 TAGGSAVMSACCPSSSSSRPPTRTSYRLLQRVCCPSAS 158


>gi|239745629 PREDICTED: hypothetical protein XP_002344147 isoform 2
           [Homo sapiens]
          Length = 158

 Score =  344 bits (882), Expect = 2e-95
 Identities = 158/158 (100%), Positives = 158/158 (100%)

Query: 1   MRASRSPPSPRRCHHHHEATGAASGAAAGGPGAGCVGLCRLALTPSAQDGRNSTFQTYKK 60
           MRASRSPPSPRRCHHHHEATGAASGAAAGGPGAGCVGLCRLALTPSAQDGRNSTFQTYKK
Sbjct: 1   MRASRSPPSPRRCHHHHEATGAASGAAAGGPGAGCVGLCRLALTPSAQDGRNSTFQTYKK 60

Query: 61  EVCLPRHSMHPGPWAICCECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQHPCWMHAAGT 120
           EVCLPRHSMHPGPWAICCECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQHPCWMHAAGT
Sbjct: 61  EVCLPRHSMHPGPWAICCECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQHPCWMHAAGT 120

Query: 121 TAGGSAVMSACCPSSSSSRPPTRTSYRLLQRVCCPSAS 158
           TAGGSAVMSACCPSSSSSRPPTRTSYRLLQRVCCPSAS
Sbjct: 121 TAGGSAVMSACCPSSSSSRPPTRTSYRLLQRVCCPSAS 158


>gi|239756651 PREDICTED: hypothetical protein isoform 1 [Homo
           sapiens]
          Length = 115

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 78  CECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQ 110
           C C  RFGGRLP+ R +A +PYWVP  LR ++Q
Sbjct: 4   CLCH-RFGGRLPMPRDQAVMPYWVPQVLRSQQQ 35


>gi|239751134 PREDICTED: hypothetical protein XP_002347721 isoform 1
           [Homo sapiens]
          Length = 115

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 78  CECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQ 110
           C C  RFGGRLP+ R +A +PYWVP  LR ++Q
Sbjct: 4   CLCH-RFGGRLPMPRDQAVMPYWVPQVLRSQQQ 35


>gi|239745627 PREDICTED: hypothetical protein XP_002344146 isoform 1
           [Homo sapiens]
          Length = 115

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 78  CECQTRFGGRLPVSRVEAALPYWVPLSLRPRKQ 110
           C C  RFGGRLP+ R +A +PYWVP  LR ++Q
Sbjct: 4   CLCH-RFGGRLPMPRDQAVMPYWVPQVLRSQQQ 35


>gi|239743055 PREDICTED: hypothetical protein XP_002342730 [Homo
           sapiens]
          Length = 235

 Score = 33.1 bits (74), Expect = 0.10
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 10  PRRCHHHHEATGAASGAAAGGPGAGCV--GLCR 40
           P+R H HH ++ + S A   GPG G     LCR
Sbjct: 81  PQRSHEHHVSSSSKSSACGAGPGVGAAKGALCR 113


>gi|33859670 leucine-rich repeats and calponin homology (CH)
          domain containing 1 [Homo sapiens]
          Length = 728

 Score = 32.0 bits (71), Expect = 0.23
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 3/28 (10%)

Query: 10 PRRCHHHHE---ATGAASGAAAGGPGAG 34
          P   HHHH+    TGA  GA  GG G+G
Sbjct: 26 PHHHHHHHQHHGGTGAPGGAGGGGGGSG 53


>gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
           isoform b [Homo sapiens]
          Length = 373

 Score = 31.6 bits (70), Expect = 0.29
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 3   ASRSPPSPRRCHHHHEATGAASGAAAGGPGA 33
           A++S   P   HHHH A G      AG PGA
Sbjct: 172 AAQSGAGPHYHHHHHHAAGHHHHPTAGAPGA 202



 Score = 27.7 bits (60), Expect = 4.3
 Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 3/27 (11%)

Query: 14  HHHHEAT---GAASGAAAGGPGAGCVG 37
           HHHH      GAA  AAA   GAG  G
Sbjct: 191 HHHHPTAGAPGAAGSAAASAGGAGGAG 217


>gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
           isoform a [Homo sapiens]
          Length = 403

 Score = 31.6 bits (70), Expect = 0.29
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 3   ASRSPPSPRRCHHHHEATGAASGAAAGGPGA 33
           A++S   P   HHHH A G      AG PGA
Sbjct: 172 AAQSGAGPHYHHHHHHAAGHHHHPTAGAPGA 202



 Score = 27.7 bits (60), Expect = 4.3
 Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 3/27 (11%)

Query: 14  HHHHEAT---GAASGAAAGGPGAGCVG 37
           HHHH      GAA  AAA   GAG  G
Sbjct: 191 HHHHPTAGAPGAAGSAAASAGGAGGAG 217


>gi|38327034 ubiquitination factor E4B isoform 2 [Homo sapiens]
          Length = 1173

 Score = 31.6 bits (70), Expect = 0.29
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 80  CQTRFGGRLPVSRVEAALPYWVPLSLRP 107
           C+T+FG   PV  + A+L  W+P SL P
Sbjct: 423 CETKFGKTHPVCNLVASLRLWLPKSLSP 450


>gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens]
          Length = 1302

 Score = 31.6 bits (70), Expect = 0.29
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 80  CQTRFGGRLPVSRVEAALPYWVPLSLRP 107
           C+T+FG   PV  + A+L  W+P SL P
Sbjct: 552 CETKFGKTHPVCNLVASLRLWLPKSLSP 579


>gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo
          sapiens]
          Length = 1116

 Score = 30.8 bits (68), Expect = 0.50
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 2  RASRSPPSPRRCHHHHEATGAASGAAAGGPGAG 34
          R+ R P SPR  H    +TG +SG++ GG G+G
Sbjct: 20 RSPRLPRSPRLGHRRTNSTGGSSGSSVGG-GSG 51


>gi|38045896 RAB6-interacting protein 2 isoform delta [Homo
          sapiens]
          Length = 1088

 Score = 30.8 bits (68), Expect = 0.50
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 2  RASRSPPSPRRCHHHHEATGAASGAAAGGPGAG 34
          R+ R P SPR  H    +TG +SG++ GG G+G
Sbjct: 20 RSPRLPRSPRLGHRRTNSTGGSSGSSVGG-GSG 51


>gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens]
          Length = 1185

 Score = 30.8 bits (68), Expect = 0.50
 Identities = 40/148 (27%), Positives = 58/148 (39%), Gaps = 27/148 (18%)

Query: 4   SRSPPSP--RRCH------HHHEATGAASGAAAGGPGAGCVGL-CRLALTPSAQDGRNST 54
           S SP SP  R+C       HH   +  A+G  AGG G+ C+ L  R  L P      +S 
Sbjct: 12  SPSPVSPAKRQCSWPSPQAHHPRGSPGAAGGGAGGVGSSCLVLGARPHLQP------DSL 65

Query: 55  FQTYKKEVCLPRHSMHPGPWAICCECQTRFGGRLPVSRVEAALPYW-VPLSLRPRKQHPC 113
                K V           WA     + RF  R+P   V+  + YW  P + R    +  
Sbjct: 66  LDCAAKTVA--------EKWAY-ERVEERF-ERIP-EPVQRRIVYWSFPRNEREICMYSS 114

Query: 114 WMHAAGTTAGGSAVMSACCPSSSSSRPP 141
           + +  G  AG +   +   P+    +PP
Sbjct: 115 FQYRGGPGAGAAGGAAGASPAEEGPQPP 142


>gi|25014088 solute carrier family 34 (sodium phosphate), member 3
           [Homo sapiens]
          Length = 599

 Score = 30.4 bits (67), Expect = 0.66
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 90  VSRVEAALPYWVPLSLRPRKQHPCWMHAAGTTAGGSAVMSACCPSSSSSRPPTRT 144
           V+ ++   P W+P+ LR     P W+H   +      +++ CCP +  S P   T
Sbjct: 531 VTVLQRRRPAWLPVRLRSWAWLPVWLH---SLEPWDRLVTRCCPCNVCSPPKATT 582


>gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]
          Length = 955

 Score = 30.4 bits (67), Expect = 0.66
 Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 52  NSTFQTYKKEVCLPRHSMHPGPWAICCECQTRFGGRLPVSRVEA-ALPYWV--PLSLRPR 108
           N   +  ++ VC   HS H    +  C C+  F  RL   RV   A P  V  P ++   
Sbjct: 222 NECRRPLERRVC--HHSCHNTVGSFLCTCRPGF--RLRADRVSCEAFPKAVLAPSAILQP 277

Query: 109 KQHPCWMHAAGTTAGGSAVMSACCPSSSSSRPP 141
           +QHP  M      AG  A+     P S +  PP
Sbjct: 278 RQHPSKMLLLLPEAGRPALSPGHSPPSGAPGPP 310


>gi|239753369 PREDICTED: hypothetical protein LOC375295 [Homo
           sapiens]
          Length = 262

 Score = 30.0 bits (66), Expect = 0.86
 Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 11/83 (13%)

Query: 65  PRHSMHPGPW-----AICCECQTRFGGRLPVSRVEA----ALPYWVPLSLRPRKQHPCWM 115
           PR S HPGP      A+        G  +P  R  A      P++     RPR + P   
Sbjct: 119 PRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHA 178

Query: 116 HAAGTTAGGSAVMSACCPSSSSS 138
             A    GGSA   +  P+SS S
Sbjct: 179 RGAHAHRGGSAWKRS--PTSSPS 199


>gi|239747936 PREDICTED: hypothetical protein LOC375295 [Homo
           sapiens]
          Length = 262

 Score = 30.0 bits (66), Expect = 0.86
 Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 11/83 (13%)

Query: 65  PRHSMHPGPW-----AICCECQTRFGGRLPVSRVEA----ALPYWVPLSLRPRKQHPCWM 115
           PR S HPGP      A+        G  +P  R  A      P++     RPR + P   
Sbjct: 119 PRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHA 178

Query: 116 HAAGTTAGGSAVMSACCPSSSSS 138
             A    GGSA   +  P+SS S
Sbjct: 179 RGAHAHRGGSAWKRS--PTSSPS 199


>gi|239741831 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 257

 Score = 30.0 bits (66), Expect = 0.86
 Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 11/83 (13%)

Query: 65  PRHSMHPGPW-----AICCECQTRFGGRLPVSRVEA----ALPYWVPLSLRPRKQHPCWM 115
           PR S HPGP      A+        G  +P  R  A      P++     RPR + P   
Sbjct: 119 PRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHA 178

Query: 116 HAAGTTAGGSAVMSACCPSSSSS 138
             A    GGSA   +  P+SS S
Sbjct: 179 RGAHAHRGGSAWKRS--PTSSPS 199


>gi|5174711 T-box 1 isoform B [Homo sapiens]
          Length = 372

 Score = 30.0 bits (66), Expect = 0.86
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 7   PPSPRRCHHHHEATGAASGAAA--GGPGAGCVGLCRLALTPSAQ 48
           PP P   +    A GAA+ AAA   GPGA C    +  +  +A+
Sbjct: 63  PPPPPHAYPFAPAAGAATSAAAEPEGPGASCAAAAKAPVKKNAK 106


>gi|18104952 T-box 1 isoform C [Homo sapiens]
          Length = 495

 Score = 30.0 bits (66), Expect = 0.86
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 7   PPSPRRCHHHHEATGAASGAAA--GGPGAGCVGLCRLALTPSAQ 48
           PP P   +    A GAA+ AAA   GPGA C    +  +  +A+
Sbjct: 63  PPPPPHAYPFAPAAGAATSAAAEPEGPGASCAAAAKAPVKKNAK 106


>gi|18104950 T-box 1 isoform A [Homo sapiens]
          Length = 398

 Score = 30.0 bits (66), Expect = 0.86
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 7   PPSPRRCHHHHEATGAASGAAA--GGPGAGCVGLCRLALTPSAQ 48
           PP P   +    A GAA+ AAA   GPGA C    +  +  +A+
Sbjct: 63  PPPPPHAYPFAPAAGAATSAAAEPEGPGASCAAAAKAPVKKNAK 106


>gi|77681565 NG5 protein [Homo sapiens]
          Length = 306

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 10/53 (18%)

Query: 3   ASRSPPS----PRRCHHHHEATGAASGAAAGGPGAGCVGLCRLALTPSAQDGR 51
           A R P S    PR  HH      A  G AAG P  GC  L R+   P  Q+ R
Sbjct: 71  AQRGPSSSATLPRPPHH------APPGPAAGAPPPGCATLPRMPPDPYLQETR 117



 Score = 26.9 bits (58), Expect = 7.3
 Identities = 32/107 (29%), Positives = 36/107 (33%), Gaps = 22/107 (20%)

Query: 7   PPSPRRCHHHHEATGAASGAAAGGPGAGCVGLCRLALTPSAQDGRNSTFQTYKKEVCLPR 66
           PP      HHH          A  P  G  GL   A T  AQ G +S+    +     P 
Sbjct: 33  PPQAAPSSHHHHHHHYHQSGTATLPRLGAGGLASSAAT--AQRGPSSSATLPR-----PP 85

Query: 67  HSMHPGPWAIC----CEC-----------QTRFGGRLPVSRVEAALP 98
           H   PGP A      C             +TRF G LP     AA P
Sbjct: 86  HHAPPGPAAGAPPPGCATLPRMPPDPYLQETRFEGPLPPPPPAAAAP 132


>gi|239753475 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 721

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 18/65 (27%)

Query: 7   PPSPRRCHHHHEATGA-----ASGAAAGG----------PG---AGCVGLCRLALTPSAQ 48
           P S R C HH   T +     A G A GG          PG    GC+   R  LT   Q
Sbjct: 288 PSSGRPCLHHLSPTSSILPPQAPGGAPGGHTWAQARWPRPGHTDPGCITFLRTVLTAHQQ 347

Query: 49  DGRNS 53
            GR S
Sbjct: 348 TGRTS 352


>gi|239748044 PREDICTED: hypothetical protein XP_002346500 [Homo
           sapiens]
          Length = 721

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 18/65 (27%)

Query: 7   PPSPRRCHHHHEATGA-----ASGAAAGG----------PG---AGCVGLCRLALTPSAQ 48
           P S R C HH   T +     A G A GG          PG    GC+   R  LT   Q
Sbjct: 288 PSSGRPCLHHLSPTSSILPPQAPGGAPGGHTWAQARWPRPGHTDPGCITFLRTVLTAHQQ 347

Query: 49  DGRNS 53
            GR S
Sbjct: 348 TGRTS 352


>gi|239741935 PREDICTED: hypothetical protein XP_002342357 [Homo
           sapiens]
          Length = 721

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 18/65 (27%)

Query: 7   PPSPRRCHHHHEATGA-----ASGAAAGG----------PG---AGCVGLCRLALTPSAQ 48
           P S R C HH   T +     A G A GG          PG    GC+   R  LT   Q
Sbjct: 288 PSSGRPCLHHLSPTSSILPPQAPGGAPGGHTWAQARWPRPGHTDPGCITFLRTVLTAHQQ 347

Query: 49  DGRNS 53
            GR S
Sbjct: 348 TGRTS 352


>gi|98986457 host cell factor 1 [Homo sapiens]
          Length = 2035

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 85   GGRLPVSRVEAALPYWVPLSLRPRKQHPCWMH--AAGTTA-------GGSAVMSACCPSS 135
            GGR P     A L   V LS    K  P   H  A  T A        G   M+  C S 
Sbjct: 1202 GGRSPAFVQLAPLSSKVRLSSPSIKDLPAGRHSHAVSTAAMTRSSVGAGEPRMAPVCESL 1261

Query: 136  SSSRPPTRTSYRLLQRVCCPSAS 158
                P T  +   L+ + CPSA+
Sbjct: 1262 QGGSPSTTVTVTALEALLCPSAT 1284


>gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo
           sapiens]
          Length = 307

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 12/31 (38%), Positives = 13/31 (41%)

Query: 2   RASRSPPSPRRCHHHHEATGAASGAAAGGPG 32
           R +   P PRR HH H       G   GG G
Sbjct: 236 RPAGDTPDPRRGHHRHRRRQRGGGRGGGGRG 266


>gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo
           sapiens]
          Length = 325

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 12/31 (38%), Positives = 13/31 (41%)

Query: 2   RASRSPPSPRRCHHHHEATGAASGAAAGGPG 32
           R +   P PRR HH H       G   GG G
Sbjct: 254 RPAGDTPDPRRGHHRHRRRQRGGGRGGGGRG 284


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.131    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,925,033
Number of Sequences: 37866
Number of extensions: 395711
Number of successful extensions: 2258
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2116
Number of HSP's gapped (non-prelim): 166
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.