Guide to the Human Genome
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Name: LOC100288525 Sequence: fasta or formatted (115aa) NCBI GI: 239745627
Description:

PREDICTED: hypothetical protein XP_002344146 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {158aa} PREDICTED: hypothetical protein XP_002344147 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8          9           2
 C cysteine            7.8          9           2
 D aspartate           3.5          4           1
 E glutamate           0.9          1           1
 F phenylalanine       2.6          3           1
 G glycine             5.2          6           2
 H histidine           1.7          2           1
 I isoleucine          5.2          6           1
 K lysine              1.7          2           1
 L leucine            14.8         17           2
 M methionine          3.5          4           1
 N asparagine          0.9          1           1
 P proline             9.6         11           1
 Q glutamine          13.0         15           3
 R arginine            8.7         10           2
 S serine              2.6          3           1
 T threonine           0.9          1           1
 V valine              5.2          6           1
 W tryptophan          2.6          3           1
 Y tyrosine            1.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344146 isofor... 
LOC100293820          1.000   PREDICTED: hypothetical protein isoform 1 
LOC100291210          1.000   PREDICTED: hypothetical protein XP_002347721 isofor...
LOC100293820          0.081   PREDICTED: hypothetical protein isoform 2 
LOC100291210          0.081   PREDICTED: hypothetical protein XP_002347722 isofor...
LOC100288525          0.081   PREDICTED: hypothetical protein XP_002344147 isofor...
MON2                  0.009   MON2 homolog 
SNX26                 0.009   sorting nexin 26 
CUL9                  0.004   p53-associated parkin-like cytoplasmic protein [Homo...
MAGEB5                0.004   PREDICTED: melanoma antigen family B, 5 
MAGEB5                0.004   PREDICTED: melanoma antigen family B, 5 
MAGEB5                0.004   PREDICTED: melanoma antigen family B, 5 
XKR5                  0.004   XK-related protein 5a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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