Guide to the Human Genome
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Name: LOC100292200 Sequence: fasta or formatted (144aa) NCBI GI: 239756491
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5         18           2
 C cysteine            4.9          7           2
 D aspartate           0.7          1           1
 E glutamate           2.8          4           1
 F phenylalanine       1.4          2           1
 G glycine             9.7         14           3
 H histidine           2.1          3           1
 I isoleucine          0.7          1           1
 K lysine              1.4          2           1
 L leucine             9.0         13           2
 M methionine          2.8          4           1
 N asparagine          1.4          2           1
 P proline             7.6         11           1
 Q glutamine           2.8          4           1
 R arginine            8.3         12           1
 S serine             11.8         17           2
 T threonine          11.8         17           3
 V valine              5.6          8           1
 W tryptophan          2.1          3           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288191          1.000   PREDICTED: hypothetical protein XP_002343462 
LOC100288368          0.993   PREDICTED: hypothetical protein XP_002343466 
LOC100288162          0.993   PREDICTED: hypothetical protein XP_002343461 
LOC100288408          0.978   PREDICTED: hypothetical protein XP_002343467 
LOC100293105          0.938   PREDICTED: hypothetical protein 
LOC100290548          0.938   PREDICTED: hypothetical protein XP_002347619 
LOC100287400          0.938   PREDICTED: hypothetical protein XP_002343449 
BAT2D1                0.029   HBxAg transactivated protein 2 
TNKS                  0.026   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
MUC16                 0.022   mucin 16 
MUC5AC                0.018   mucin 5AC 
MUC5B                 0.018   mucin 5, subtype B, tracheobronchial 
AMMECR1               0.018   AMMECR1 protein isoform 2 
AMMECR1               0.018   AMMECR1 protein isoform 1 
BCORL1                0.015   BCL6 co-repressor-like 1 
FAM71B                0.011   family with sequence similarity 71, member B 
LOC100291777          0.011   PREDICTED: similar to DMBT1 isoform 1 
LOC100291777          0.011   PREDICTED: similar to DMBT1 isoform 2 
DMBT1                 0.011   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.011   deleted in malignant brain tumors 1 isoform b precu...
DMBT1                 0.011   deleted in malignant brain tumors 1 isoform a precu...
TMEM132A              0.011   transmembrane protein 132A isoform a 
TMEM132A              0.011   transmembrane protein 132A isoform b 
DOK1                  0.011   docking protein 1 
GPBAR1                0.011   G protein-coupled bile acid receptor 1 
GPBAR1                0.011   G protein-coupled bile acid receptor 1 
GPBAR1                0.011   G protein-coupled bile acid receptor 1 
LOC100134359          0.011   PREDICTED: hypothetical protein 
LOC100292283          0.011   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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