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Search of human proteins with 239755365
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755365 PREDICTED: similar to hCG1791993 [Homo sapiens]
(141 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755365 PREDICTED: similar to hCG1791993 [Homo sapiens] 281 1e-76
gi|169198899 PREDICTED: similar to hCG1791993 [Homo sapiens] 281 1e-76
gi|239744148 PREDICTED: hypothetical protein LOC642538 [Homo sap... 280 4e-76
gi|113422056 PREDICTED: similar to nuclear DNA-binding protein [... 268 1e-72
gi|113421639 PREDICTED: similar to nuclear DNA-binding protein [... 268 1e-72
gi|27894373 nuclear DNA-binding protein [Homo sapiens] 264 2e-71
gi|5453583 nuclear DNA-binding protein [Homo sapiens] 264 2e-71
gi|124249396 coiled-coil domain containing 30 [Homo sapiens] 32 0.23
gi|31657092 ATP binding cassette, sub-family A (ABC1), member 13... 29 1.5
gi|110611228 utrophin [Homo sapiens] 28 2.5
gi|8923417 ADP-ribosylhydrolase like 2 [Homo sapiens] 27 4.3
gi|38569493 potassium voltage-gated channel, subfamily H (eag-re... 27 7.3
gi|155722985 SMC5 protein [Homo sapiens] 26 9.5
gi|214010216 SMC6 protein [Homo sapiens] 26 9.5
gi|13375848 SMC6 protein [Homo sapiens] 26 9.5
gi|112380630 leiomodin 1 (smooth muscle) [Homo sapiens] 26 9.5
>gi|239755365 PREDICTED: similar to hCG1791993 [Homo sapiens]
Length = 141
Score = 281 bits (719), Expect = 1e-76
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSA 60
MAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSA
Sbjct: 1 MAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSA 60
Query: 61 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRN 120
YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRN
Sbjct: 61 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRN 120
Query: 121 ALWEPKPKNASKVAHKGKSKS 141
ALWEPKPKNASKVAHKGKSKS
Sbjct: 121 ALWEPKPKNASKVAHKGKSKS 141
>gi|169198899 PREDICTED: similar to hCG1791993 [Homo sapiens]
Length = 142
Score = 281 bits (719), Expect = 1e-76
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSA 60
MAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSA
Sbjct: 2 MAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSA 61
Query: 61 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRN 120
YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRN
Sbjct: 62 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRN 121
Query: 121 ALWEPKPKNASKVAHKGKSKS 141
ALWEPKPKNASKVAHKGKSKS
Sbjct: 122 ALWEPKPKNASKVAHKGKSKS 142
>gi|239744148 PREDICTED: hypothetical protein LOC642538 [Homo
sapiens]
Length = 142
Score = 280 bits (715), Expect = 4e-76
Identities = 140/141 (99%), Positives = 140/141 (99%)
Query: 1 MAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSA 60
MAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSA
Sbjct: 2 MAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSA 61
Query: 61 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRN 120
YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRN
Sbjct: 62 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRN 121
Query: 121 ALWEPKPKNASKVAHKGKSKS 141
ALWEPKPKN SKVAHKGKSKS
Sbjct: 122 ALWEPKPKNTSKVAHKGKSKS 142
>gi|113422056 PREDICTED: similar to nuclear DNA-binding protein
[Homo sapiens]
Length = 157
Score = 268 bits (685), Expect = 1e-72
Identities = 135/140 (96%), Positives = 136/140 (97%)
Query: 2 AAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSAY 61
AAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSAY
Sbjct: 18 AAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSAY 77
Query: 62 TLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRNA 121
LNSMFW YLATQGVNPKEH VKQELERIRVYMNRVKEI DKKKAGKLDRGAASRFVRNA
Sbjct: 78 ILNSMFWAYLATQGVNPKEHSVKQELERIRVYMNRVKEIADKKKAGKLDRGAASRFVRNA 137
Query: 122 LWEPKPKNASKVAHKGKSKS 141
LWEPKPKNASKVA+KGKSKS
Sbjct: 138 LWEPKPKNASKVAYKGKSKS 157
>gi|113421639 PREDICTED: similar to nuclear DNA-binding protein
[Homo sapiens]
Length = 157
Score = 268 bits (685), Expect = 1e-72
Identities = 135/140 (96%), Positives = 136/140 (97%)
Query: 2 AAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSAY 61
AAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSAY
Sbjct: 18 AAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSAY 77
Query: 62 TLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRNA 121
LNSMFW YLATQGVNPKEH VKQELERIRVYMNRVKEI DKKKAGKLDRGAASRFVRNA
Sbjct: 78 ILNSMFWAYLATQGVNPKEHSVKQELERIRVYMNRVKEIADKKKAGKLDRGAASRFVRNA 137
Query: 122 LWEPKPKNASKVAHKGKSKS 141
LWEPKPKNASKVA+KGKSKS
Sbjct: 138 LWEPKPKNASKVAYKGKSKS 157
>gi|27894373 nuclear DNA-binding protein [Homo sapiens]
Length = 141
Score = 264 bits (675), Expect = 2e-71
Identities = 133/141 (94%), Positives = 136/141 (96%)
Query: 1 MAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSA 60
MA EEINEDYPVEIH+YLSAF NSI AVDEMLK MMSVSRNELLQKLDPLEQAKVDLVSA
Sbjct: 1 MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA 60
Query: 61 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRN 120
YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFV+N
Sbjct: 61 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN 120
Query: 121 ALWEPKPKNASKVAHKGKSKS 141
ALWEPK KNASKVA+KGKSKS
Sbjct: 121 ALWEPKSKNASKVANKGKSKS 141
>gi|5453583 nuclear DNA-binding protein [Homo sapiens]
Length = 141
Score = 264 bits (675), Expect = 2e-71
Identities = 133/141 (94%), Positives = 136/141 (96%)
Query: 1 MAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSA 60
MA EEINEDYPVEIH+YLSAF NSI AVDEMLK MMSVSRNELLQKLDPLEQAKVDLVSA
Sbjct: 1 MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA 60
Query: 61 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRN 120
YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFV+N
Sbjct: 61 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN 120
Query: 121 ALWEPKPKNASKVAHKGKSKS 141
ALWEPK KNASKVA+KGKSKS
Sbjct: 121 ALWEPKSKNASKVANKGKSKS 141
>gi|124249396 coiled-coil domain containing 30 [Homo sapiens]
Length = 783
Score = 31.6 bits (70), Expect = 0.23
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 39 SRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVK 98
S EL +KL L+Q K L Y L + + + + N K H K +L++++ +
Sbjct: 465 SNQELSEKLSKLQQEKEALREEY-LRLLKLLNVHVRNYNEKHHQQKVKLQKVKYRLTNEV 523
Query: 99 EITDKK 104
E+ DK+
Sbjct: 524 ELRDKR 529
>gi|31657092 ATP binding cassette, sub-family A (ABC1), member 13
[Homo sapiens]
Length = 5058
Score = 28.9 bits (63), Expect = 1.5
Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 6 INEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLD 48
I+ED+ + + Y+S F NS +V+++L N +S N+ + ++
Sbjct: 1071 IDEDFRISLFQYMSQFFNS--SVEDLLDNKCLISDNKHISSVN 1111
>gi|110611228 utrophin [Homo sapiens]
Length = 3433
Score = 28.1 bits (61), Expect = 2.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 16 DYLSAFANSIDAVDEMLKNMMSVSRN 41
D SAF N I+ ++ LKNM + N
Sbjct: 1057 DQCSAFVNEIETIESSLKNMKEIETN 1082
>gi|8923417 ADP-ribosylhydrolase like 2 [Homo sapiens]
Length = 363
Score = 27.3 bits (59), Expect = 4.3
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 69 VYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASR 116
V+LA QG + EH +KQ L + + + D ++ G +R +SR
Sbjct: 198 VHLALQGESSSEHFLKQLLGHMEDLEGDAQSVLDARELGMEERPYSSR 245
>gi|38569493 potassium voltage-gated channel, subfamily H
(eag-related), member 3 [Homo sapiens]
Length = 1083
Score = 26.6 bits (57), Expect = 7.3
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 40 RNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKE 99
R ++ + LD ++ K +L+ FW L P+K E + +++ K+
Sbjct: 80 RQQIRKALDEHKEFKAELILYRKSGLPFWCLLDVI-------PIKNEKGEVALFLVSHKD 132
Query: 100 ITDKKKAGKLDR 111
I++ K G DR
Sbjct: 133 ISETKNRGGPDR 144
>gi|155722985 SMC5 protein [Homo sapiens]
Length = 1101
Score = 26.2 bits (56), Expect = 9.5
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 11 PVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKL-DPLEQAKVDLVSAYTLNSMFWV 69
P E+H Y N + ++ + + E LQK+ E+ K D+ Y +
Sbjct: 205 PPEMHKYHCELKNLREKEKQLETSCKE--KTEYLQKMVQRNERYKQDVERFYERKRHLDL 262
Query: 70 YLATQGVNP--KEHPVKQELERIRVYMNRVKEITDKKKAGKL 109
+ P + V+QE E +++ +RVKE K K G++
Sbjct: 263 IEMLEAKRPWVEYENVRQEYEEVKLVRDRVKEEVRKLKEGQI 304
>gi|214010216 SMC6 protein [Homo sapiens]
Length = 1091
Score = 26.2 bits (56), Expect = 9.5
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 8/109 (7%)
Query: 29 DEMLKNMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELE 88
DE L + + Q L+P + +S W+ + +E+ V QE+E
Sbjct: 381 DEQLCKRIEELKKSTDQSLEPERLERQKKIS--------WLKERVKAFQNQENSVNQEIE 432
Query: 89 RIRVYMNRVKEITDKKKAGKLDRGAASRFVRNALWEPKPKNASKVAHKG 137
+ + + + KE K K +LD A + + L E K ++ G
Sbjct: 433 QFQQAIEKDKEEHGKIKREELDVKHALSYNQRQLKELKDSKTDRLKRFG 481
>gi|13375848 SMC6 protein [Homo sapiens]
Length = 1091
Score = 26.2 bits (56), Expect = 9.5
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 8/109 (7%)
Query: 29 DEMLKNMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELE 88
DE L + + Q L+P + +S W+ + +E+ V QE+E
Sbjct: 381 DEQLCKRIEELKKSTDQSLEPERLERQKKIS--------WLKERVKAFQNQENSVNQEIE 432
Query: 89 RIRVYMNRVKEITDKKKAGKLDRGAASRFVRNALWEPKPKNASKVAHKG 137
+ + + + KE K K +LD A + + L E K ++ G
Sbjct: 433 QFQQAIEKDKEEHGKIKREELDVKHALSYNQRQLKELKDSKTDRLKRFG 481
>gi|112380630 leiomodin 1 (smooth muscle) [Homo sapiens]
Length = 600
Score = 26.2 bits (56), Expect = 9.5
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 75 GVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRG 112
G PKE + + +++ RV+ DKK+AGK RG
Sbjct: 146 GEKPKEEKIIRGIDK-----GRVRAAVDKKEAGKDGRG 178
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.128 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,532,804
Number of Sequences: 37866
Number of extensions: 156421
Number of successful extensions: 379
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 16
length of query: 141
length of database: 18,247,518
effective HSP length: 92
effective length of query: 49
effective length of database: 14,763,846
effective search space: 723428454
effective search space used: 723428454
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.