Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239755236
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755236 PREDICTED: similar to Putative uncharacterized
protein C10orf52 [Homo sapiens]
(121 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755236 PREDICTED: similar to Putative uncharacterized prot... 249 3e-67
gi|239749764 PREDICTED: hypothetical protein XP_002347152 [Homo ... 249 3e-67
gi|239744023 PREDICTED: hypothetical protein XP_002343020 [Homo ... 249 3e-67
gi|41872631 fatty acid synthase [Homo sapiens] 57 3e-09
gi|23097240 leucine-rich repeats and WD repeat domain containing... 30 0.43
gi|116256487 patatin-like phospholipase domain containing 6 [Hom... 30 0.57
gi|23510389 myotubularin-related protein 3 isoform b [Homo sapiens] 28 1.3
gi|23510387 myotubularin-related protein 3 isoform a [Homo sapiens] 28 1.3
gi|10835109 myotubularin-related protein 3 isoform c [Homo sapiens] 28 1.3
gi|9256600 protocadherin alpha subfamily C, 2 isoform 1 precurso... 28 1.6
gi|14165431 protocadherin alpha subfamily C, 2 isoform 2 precurs... 28 1.6
gi|55953106 phospholipase A2 receptor 1 isoform 2 precursor [Hom... 27 2.8
gi|55953104 phospholipase A2 receptor 1 isoform 1 precursor [Hom... 27 2.8
gi|239753062 PREDICTED: hypothetical protein [Homo sapiens] 27 3.7
gi|239757474 PREDICTED: similar to hCG1785205 [Homo sapiens] 27 4.8
gi|239751984 PREDICTED: similar to hCG1785205 [Homo sapiens] 27 4.8
gi|169162069 PREDICTED: hypothetical protein [Homo sapiens] 27 4.8
gi|239746471 PREDICTED: hypothetical protein XP_002343764 [Homo ... 27 4.8
gi|169162780 PREDICTED: hypothetical protein [Homo sapiens] 27 4.8
gi|239751789 PREDICTED: hypothetical protein [Homo sapiens] 26 6.3
gi|239746366 PREDICTED: hypothetical protein XP_002343738 [Homo ... 26 6.3
gi|239746280 PREDICTED: hypothetical protein XP_002343722 [Homo ... 26 6.3
gi|34335253 disks large-associated protein 4 isoform a [Homo sap... 26 6.3
>gi|239755236 PREDICTED: similar to Putative uncharacterized protein
C10orf52 [Homo sapiens]
Length = 121
Score = 249 bits (637), Expect = 3e-67
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MEGRNCTVEILPERLNIEGWYDADDTKPGKSWAGRAASIERLNEFDNNLFGISDLEAECL 60
MEGRNCTVEILPERLNIEGWYDADDTKPGKSWAGRAASIERLNEFDNNLFGISDLEAECL
Sbjct: 1 MEGRNCTVEILPERLNIEGWYDADDTKPGKSWAGRAASIERLNEFDNNLFGISDLEAECL 60
Query: 61 DPQQKLLLECTYGALESAGVPAKEVAGSRTGVFIGIMNQDYEFMSRRTPRMQTTIMPLDL 120
DPQQKLLLECTYGALESAGVPAKEVAGSRTGVFIGIMNQDYEFMSRRTPRMQTTIMPLDL
Sbjct: 61 DPQQKLLLECTYGALESAGVPAKEVAGSRTGVFIGIMNQDYEFMSRRTPRMQTTIMPLDL 120
Query: 121 Q 121
Q
Sbjct: 121 Q 121
>gi|239749764 PREDICTED: hypothetical protein XP_002347152 [Homo
sapiens]
Length = 121
Score = 249 bits (637), Expect = 3e-67
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MEGRNCTVEILPERLNIEGWYDADDTKPGKSWAGRAASIERLNEFDNNLFGISDLEAECL 60
MEGRNCTVEILPERLNIEGWYDADDTKPGKSWAGRAASIERLNEFDNNLFGISDLEAECL
Sbjct: 1 MEGRNCTVEILPERLNIEGWYDADDTKPGKSWAGRAASIERLNEFDNNLFGISDLEAECL 60
Query: 61 DPQQKLLLECTYGALESAGVPAKEVAGSRTGVFIGIMNQDYEFMSRRTPRMQTTIMPLDL 120
DPQQKLLLECTYGALESAGVPAKEVAGSRTGVFIGIMNQDYEFMSRRTPRMQTTIMPLDL
Sbjct: 61 DPQQKLLLECTYGALESAGVPAKEVAGSRTGVFIGIMNQDYEFMSRRTPRMQTTIMPLDL 120
Query: 121 Q 121
Q
Sbjct: 121 Q 121
>gi|239744023 PREDICTED: hypothetical protein XP_002343020 [Homo
sapiens]
Length = 121
Score = 249 bits (636), Expect = 3e-67
Identities = 120/121 (99%), Positives = 121/121 (100%)
Query: 1 MEGRNCTVEILPERLNIEGWYDADDTKPGKSWAGRAASIERLNEFDNNLFGISDLEAECL 60
MEGRNCTVEILPERLNIEGWYDADDTKPGKSWAGRAASIERLNEFDNNLFGISDLEAECL
Sbjct: 1 MEGRNCTVEILPERLNIEGWYDADDTKPGKSWAGRAASIERLNEFDNNLFGISDLEAECL 60
Query: 61 DPQQKLLLECTYGALESAGVPAKEVAGSRTGVFIGIMNQDYEFMSRRTPRMQTTIMPLDL 120
DPQQKLLLECTYGALESAGVPAKEVAGSRTGVFIGIMNQDYEFMSRRTPRMQTT+MPLDL
Sbjct: 61 DPQQKLLLECTYGALESAGVPAKEVAGSRTGVFIGIMNQDYEFMSRRTPRMQTTVMPLDL 120
Query: 121 Q 121
Q
Sbjct: 121 Q 121
>gi|41872631 fatty acid synthase [Homo sapiens]
Length = 2511
Score = 57.0 bits (136), Expect = 3e-09
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 11 LPERLNIEGWYD---------ADDTKPGKSWA----GRAASIERLNEFDNNLFGISDLEA 57
LPE N++ ++D DD + K+ R+ ++ L+ FD + FG+ +A
Sbjct: 13 LPESENLQEFWDNLIGGVDMVTDDDRRWKAGLYGLPRRSGKLKDLSRFDASFFGVHPKQA 72
Query: 58 ECLDPQQKLLLECTYGALESAGVPAKEVAGSRTGVFIGIMNQDYEFMSRRTP 109
+DPQ +LLLE TY A+ G+ + G+ TGV++G+ + R P
Sbjct: 73 HTMDPQLRLLLEVTYEAIVDGGINPDSLRGTHTGVWVGVSGSETSEALSRDP 124
>gi|23097240 leucine-rich repeats and WD repeat domain containing 1
[Homo sapiens]
Length = 647
Score = 30.0 bits (66), Expect = 0.43
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 94 IGIMNQDYEFMSRRTPRMQTTIMPLDL 120
IG+ NQDYEF + + + TT +PL L
Sbjct: 422 IGVPNQDYEFQASQLLTLDTTSIPLRL 448
>gi|116256487 patatin-like phospholipase domain containing 6 [Homo
sapiens]
Length = 1327
Score = 29.6 bits (65), Expect = 0.57
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 74 ALESAGVPAKEVAGSRTGVFIGIMNQDYEFMSRRTPR 110
ALE AGVP V G+ G FIG + + SR R
Sbjct: 951 ALEEAGVPVDLVGGTSIGSFIGALYAEERSASRTKQR 987
>gi|23510389 myotubularin-related protein 3 isoform b [Homo sapiens]
Length = 1161
Score = 28.5 bits (62), Expect = 1.3
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 28/127 (22%)
Query: 19 GWYDADDTKPGKSWAGRAASIERLN----------------------EFDNNLFGISDLE 56
GW +ADD +S A AS R + EFD++L S E
Sbjct: 244 GWRNADDEHLVQSVAKACASDSRSSGSKLSTRNTSRDFPNGGDLSDVEFDSSLSNASGAE 303
Query: 57 AECLDPQQKLLLEC-TYGA-----LESAGVPAKEVAGSRTGVFIGIMNQDYEFMSRRTPR 110
+ + PQ+ L+L+ +Y A + G E + VF+G+ N S ++ R
Sbjct: 304 SLAIQPQKLLILDARSYAAAVANRAKGGGCECPEYYPNCEVVFMGMANIHSIRRSFQSLR 363
Query: 111 MQTTIMP 117
+ T MP
Sbjct: 364 LLCTQMP 370
>gi|23510387 myotubularin-related protein 3 isoform a [Homo sapiens]
Length = 1170
Score = 28.5 bits (62), Expect = 1.3
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 28/127 (22%)
Query: 19 GWYDADDTKPGKSWAGRAASIERLN----------------------EFDNNLFGISDLE 56
GW +ADD +S A AS R + EFD++L S E
Sbjct: 244 GWRNADDEHLVQSVAKACASDSRSSGSKLSTRNTSRDFPNGGDLSDVEFDSSLSNASGAE 303
Query: 57 AECLDPQQKLLLEC-TYGA-----LESAGVPAKEVAGSRTGVFIGIMNQDYEFMSRRTPR 110
+ + PQ+ L+L+ +Y A + G E + VF+G+ N S ++ R
Sbjct: 304 SLAIQPQKLLILDARSYAAAVANRAKGGGCECPEYYPNCEVVFMGMANIHSIRRSFQSLR 363
Query: 111 MQTTIMP 117
+ T MP
Sbjct: 364 LLCTQMP 370
>gi|10835109 myotubularin-related protein 3 isoform c [Homo sapiens]
Length = 1198
Score = 28.5 bits (62), Expect = 1.3
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 28/127 (22%)
Query: 19 GWYDADDTKPGKSWAGRAASIERLN----------------------EFDNNLFGISDLE 56
GW +ADD +S A AS R + EFD++L S E
Sbjct: 244 GWRNADDEHLVQSVAKACASDSRSSGSKLSTRNTSRDFPNGGDLSDVEFDSSLSNASGAE 303
Query: 57 AECLDPQQKLLLEC-TYGA-----LESAGVPAKEVAGSRTGVFIGIMNQDYEFMSRRTPR 110
+ + PQ+ L+L+ +Y A + G E + VF+G+ N S ++ R
Sbjct: 304 SLAIQPQKLLILDARSYAAAVANRAKGGGCECPEYYPNCEVVFMGMANIHSIRRSFQSLR 363
Query: 111 MQTTIMP 117
+ T MP
Sbjct: 364 LLCTQMP 370
>gi|9256600 protocadherin alpha subfamily C, 2 isoform 1 precursor
[Homo sapiens]
Length = 1007
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 46 DNNLFGISDLEAECLDPQQKLLLECTYGALES--AGVPAKEVA--GSRTGVFIGIMNQDY 101
+NNL G+ + DP +K E TY LE G+P S +G + + DY
Sbjct: 480 ENNLPGVLLCTVQATDPDEKENAEVTYSLLEREIQGLPVTSYVSINSASGSLYAVNSFDY 539
Query: 102 E 102
E
Sbjct: 540 E 540
>gi|14165431 protocadherin alpha subfamily C, 2 isoform 2 precursor
[Homo sapiens]
Length = 884
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 46 DNNLFGISDLEAECLDPQQKLLLECTYGALES--AGVPAKEVA--GSRTGVFIGIMNQDY 101
+NNL G+ + DP +K E TY LE G+P S +G + + DY
Sbjct: 480 ENNLPGVLLCTVQATDPDEKENAEVTYSLLEREIQGLPVTSYVSINSASGSLYAVNSFDY 539
Query: 102 E 102
E
Sbjct: 540 E 540
>gi|55953106 phospholipase A2 receptor 1 isoform 2 precursor [Homo
sapiens]
Length = 1324
Score = 27.3 bits (59), Expect = 2.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 87 GSRTGVFIGIMNQDYEFMSRRTPRMQTTIMPLDL 120
G T V+IG+ N DYE P + + P D+
Sbjct: 1016 GQTTSVWIGLQNDDYETWLNGKPVVYSNWSPFDI 1049
>gi|55953104 phospholipase A2 receptor 1 isoform 1 precursor [Homo
sapiens]
Length = 1463
Score = 27.3 bits (59), Expect = 2.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 87 GSRTGVFIGIMNQDYEFMSRRTPRMQTTIMPLDL 120
G T V+IG+ N DYE P + + P D+
Sbjct: 1016 GQTTSVWIGLQNDDYETWLNGKPVVYSNWSPFDI 1049
>gi|239753062 PREDICTED: hypothetical protein [Homo sapiens]
Length = 811
Score = 26.9 bits (58), Expect = 3.7
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 4 RNCTVEILPERLNIEGWYDADDTKPGKSWAGRAASIERLNEFDNNLFGISDLEAEC 59
R+C +L R+NI D T G SW G A ++ L + ++ G S L C
Sbjct: 142 RHCGNYLL--RVNITMRAPVDITDVGMSWQGFAEAVPLLGKVVGDMSGASSLALGC 195
>gi|239757474 PREDICTED: similar to hCG1785205 [Homo sapiens]
Length = 362
Score = 26.6 bits (57), Expect = 4.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 27 KPGKSWAGRAASIERLN--EFDNNLFGISDLEAECLDPQQKLLLECT 71
+PG S +AS ER + N GI+ L+ CL P++ CT
Sbjct: 315 RPGSSSCTLSASTERPDGSSTPGNPDGITHLQCSCLHPKRAASSSCT 361
>gi|239751984 PREDICTED: similar to hCG1785205 [Homo sapiens]
Length = 362
Score = 26.6 bits (57), Expect = 4.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 27 KPGKSWAGRAASIERLN--EFDNNLFGISDLEAECLDPQQKLLLECT 71
+PG S +AS ER + N GI+ L+ CL P++ CT
Sbjct: 315 RPGSSSCTLSASTERPDGSSTPGNPDGITHLQCSCLHPKRAASSSCT 361
>gi|169162069 PREDICTED: hypothetical protein [Homo sapiens]
Length = 530
Score = 26.6 bits (57), Expect = 4.8
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 14 RLNIEGWYDADDTKPGKSWAG 34
R+ +G +A++T+ G+SWAG
Sbjct: 217 RIEHQGQLNAEETRKGRSWAG 237
>gi|239746471 PREDICTED: hypothetical protein XP_002343764 [Homo
sapiens]
Length = 362
Score = 26.6 bits (57), Expect = 4.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 27 KPGKSWAGRAASIERLN--EFDNNLFGISDLEAECLDPQQKLLLECT 71
+PG S +AS ER + N GI+ L+ CL P++ CT
Sbjct: 315 RPGSSSCTLSASTERPDGSSTPGNPDGITHLQCSCLHPKRAASSSCT 361
>gi|169162780 PREDICTED: hypothetical protein [Homo sapiens]
Length = 530
Score = 26.6 bits (57), Expect = 4.8
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 14 RLNIEGWYDADDTKPGKSWAG 34
R+ +G +A++T+ G+SWAG
Sbjct: 217 RIEHQGQLNAEETRKGRSWAG 237
>gi|239751789 PREDICTED: hypothetical protein [Homo sapiens]
Length = 203
Score = 26.2 bits (56), Expect = 6.3
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 52 ISDLEAECLDPQQKLLLECTYGALESAGVPAKEVAGSRTGVFIGI 96
I D +A+ L Q+ ++ AL++AG A+E SRTG G+
Sbjct: 47 ILDRDADTLGKQEAVV---ALTALKTAGGAAREAGESRTGSLAGL 88
>gi|239746366 PREDICTED: hypothetical protein XP_002343738 [Homo
sapiens]
Length = 522
Score = 26.2 bits (56), Expect = 6.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 12 PERLNIEGWYDADDTKPGKSWAG 34
P RL + GW ADD + WAG
Sbjct: 32 PPRLALSGWGAADDEEFLSGWAG 54
>gi|239746280 PREDICTED: hypothetical protein XP_002343722 [Homo
sapiens]
Length = 186
Score = 26.2 bits (56), Expect = 6.3
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 52 ISDLEAECLDPQQKLLLECTYGALESAGVPAKEVAGSRTGVFIGI 96
I D +A+ L Q+ ++ AL++AG A+E SRTG G+
Sbjct: 30 ILDRDADTLGKQEAVV---ALTALKTAGGAAREAGESRTGSLAGL 71
>gi|34335253 disks large-associated protein 4 isoform a [Homo
sapiens]
Length = 989
Score = 26.2 bits (56), Expect = 6.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 14 RLNIEGWYDADDTKPGKSWAGRAA 37
R NI GW+ +DD G++ A R++
Sbjct: 198 RSNISGWWSSDDNLDGEAGAFRSS 221
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,680,232
Number of Sequences: 37866
Number of extensions: 176292
Number of successful extensions: 360
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 23
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.