Guide to the Human Genome
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Name: LOC100293681 Sequence: fasta or formatted (121aa) NCBI GI: 239755236
Description:

PREDICTED: similar to Putative uncharacterized protein C10orf52

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4          9           2
 C cysteine            2.5          3           1
 D aspartate           6.6          8           2
 E glutamate           9.9         12           1
 F phenylalanine       3.3          4           1
 G glycine             8.3         10           1
 H histidine           0.0          0           0
 I isoleucine          5.8          7           1
 K lysine              3.3          4           1
 L leucine             9.9         12           3
 M methionine          4.1          5           1
 N asparagine          5.0          6           2
 P proline             5.0          6           1
 Q glutamine           4.1          5           2
 R arginine            6.6          8           2
 S serine              5.0          6           1
 T threonine           5.8          7           2
 V valine              3.3          4           1
 W tryptophan          1.7          2           1
 Y tyrosine            2.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Putative uncharacterized prot... 
LOC100290712          1.000   PREDICTED: hypothetical protein XP_002347152 
LOC100289548          1.000   PREDICTED: hypothetical protein XP_002343020 
FASN                  0.143   fatty acid synthase 
LRWD1                 0.022   leucine-rich repeats and WD repeat domain containing...
PNPLA6                0.022   patatin-like phospholipase domain containing 6 [Hom...
MTMR3                 0.013   myotubularin-related protein 3 isoform b 
MTMR3                 0.013   myotubularin-related protein 3 isoform a 
MTMR3                 0.013   myotubularin-related protein 3 isoform c 
PCDHAC2               0.013   protocadherin alpha subfamily C, 2 isoform 1 precurso...
PCDHAC2               0.013   protocadherin alpha subfamily C, 2 isoform 2 precurs...
PLA2R1                0.009   phospholipase A2 receptor 1 isoform 2 precursor [Hom...
PLA2R1                0.009   phospholipase A2 receptor 1 isoform 1 precursor [Hom...
LOC648262             0.009   PREDICTED: hypothetical protein 
LOC100293297          0.009   PREDICTED: similar to hCG1785205 
LOC100288352          0.009   PREDICTED: similar to hCG1785205 
LOC100129238          0.009   PREDICTED: hypothetical protein 
LOC100288352          0.009   PREDICTED: hypothetical protein XP_002343764 
LOC100129238          0.009   PREDICTED: hypothetical protein 
LOC100289588          0.004   PREDICTED: hypothetical protein 
LOC100288302          0.004   PREDICTED: hypothetical protein XP_002343738 
LOC100289588          0.004   PREDICTED: hypothetical protein XP_002343722 
DLGAP4                0.004   disks large-associated protein 4 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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