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Search of human proteins with 239755008
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755008 PREDICTED: hypothetical protein [Homo sapiens]
(253 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755008 PREDICTED: hypothetical protein [Homo sapiens] 486 e-138
gi|169168886 PREDICTED: hypothetical protein [Homo sapiens] 33 0.31
gi|134133288 zinc finger protein 407 isoform 1 [Homo sapiens] 32 0.41
gi|239755402 PREDICTED: hypothetical protein [Homo sapiens] 31 0.91
gi|239749910 PREDICTED: hypothetical protein XP_002347211 [Homo ... 31 0.91
gi|239744211 PREDICTED: hypothetical protein XP_002343075 [Homo ... 31 0.91
gi|62988346 glutamate receptor, ionotropic, N-methyl-D-aspartate... 30 1.5
gi|51173735 ras responsive element binding protein 1 isoform 2 [... 30 2.0
gi|51173737 ras responsive element binding protein 1 isoform 1 [... 30 2.0
gi|24429588 zinc finger protein 532 [Homo sapiens] 30 2.0
gi|31542747 catechol-O-methyltransferase domain containing 1 [Ho... 30 2.0
gi|27881501 ATP-binding cassette, sub-family A, member 12 isofor... 30 2.6
gi|30795238 ATP-binding cassette, sub-family A, member 12 isofor... 30 2.6
gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens] 29 3.4
gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens] 29 3.4
gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens] 29 3.4
gi|189181759 electron transfer flavoprotein, alpha polypeptide i... 28 5.9
gi|4503607 electron transfer flavoprotein, alpha polypeptide iso... 28 5.9
gi|4502557 calcium/calmodulin-dependent protein kinase IV [Homo ... 28 5.9
gi|239742988 PREDICTED: hypothetical protein [Homo sapiens] 28 7.7
>gi|239755008 PREDICTED: hypothetical protein [Homo sapiens]
Length = 253
Score = 486 bits (1251), Expect = e-138
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MLTREEGQRHLSVAPAPDAGVRQRPVGAEVPRQVADLARVELEGSHGVARAQPPQVSLEP 60
MLTREEGQRHLSVAPAPDAGVRQRPVGAEVPRQVADLARVELEGSHGVARAQPPQVSLEP
Sbjct: 1 MLTREEGQRHLSVAPAPDAGVRQRPVGAEVPRQVADLARVELEGSHGVARAQPPQVSLEP 60
Query: 61 VAGLWLALHALAEARRVVVDKRVHPERDAEAGVAQAAEHVAGVGEFDLIEVEVAISRCVH 120
VAGLWLALHALAEARRVVVDKRVHPERDAEAGVAQAAEHVAGVGEFDLIEVEVAISRCVH
Sbjct: 61 VAGLWLALHALAEARRVVVDKRVHPERDAEAGVAQAAEHVAGVGEFDLIEVEVAISRCVH 120
Query: 121 VVDFQVAAVEVVQADLLGKTQHLVLVHGAPPVALEDAPKRGVGGVDIAGDERLGLLLAIQ 180
VVDFQVAAVEVVQADLLGKTQHLVLVHGAPPVALEDAPKRGVGGVDIAGDERLGLLLAIQ
Sbjct: 121 VVDFQVAAVEVVQADLLGKTQHLVLVHGAPPVALEDAPKRGVGGVDIAGDERLGLLLAIQ 180
Query: 181 ADGPVLRPHLGATIPPVGRERAAQQGAIAAAGVKVQRAGAEGQAEDLLSLLIADGEAASF 240
ADGPVLRPHLGATIPPVGRERAAQQGAIAAAGVKVQRAGAEGQAEDLLSLLIADGEAASF
Sbjct: 181 ADGPVLRPHLGATIPPVGRERAAQQGAIAAAGVKVQRAGAEGQAEDLLSLLIADGEAASF 240
Query: 241 QVQQLRAKSLRLA 253
QVQQLRAKSLRLA
Sbjct: 241 QVQQLRAKSLRLA 253
>gi|169168886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 32.7 bits (73), Expect = 0.31
Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 146 VHGAPPVALEDAPKRGVGGVDI-----AGDERLGLLLAIQADGPVL-----RPHLGATIP 195
+ GAP +A E+ KRGVG ++ G+ + I A G L R + A
Sbjct: 36 MQGAPSLAGEEEGKRGVGDAEVRHWGTLTSRASGMRVGIWAAGGGLAAAGERNSVRAVSF 95
Query: 196 PVG----RERAAQQGAIAAAGVKVQRAG-AEGQAEDLLSLLIADGEAASFQVQQLRAK 248
G RE AA A+ AAG+ A A G+ +L LL AD AA+ + A+
Sbjct: 96 SSGRVGVREEAAGHLAVGAAGLTGAHADLAVGRGAELAQLLGADAAAAAAVQHEAHAR 153
>gi|134133288 zinc finger protein 407 isoform 1 [Homo sapiens]
Length = 2248
Score = 32.3 bits (72), Expect = 0.41
Identities = 57/236 (24%), Positives = 93/236 (39%), Gaps = 21/236 (8%)
Query: 1 MLTREEGQRHLSVAPAPDAG-VRQRPVGAEVPRQVADLARVELEGSHGVARAQPPQVSLE 59
+L + GQ VA P+A ++ P E P V L +V + S +A + QV+ +
Sbjct: 2019 VLIQLPGQEVSHVAADPEAPEIQMFPQAQESPAAVEVLTQV-VHPSAAMASQERAQVAFK 2077
Query: 60 PVAG--LWLALHALAEARRVVVDKRVHPERDAEAGVAQAAEHVAGV------GE-FDLIE 110
+ L A+ A A ++V D E V A A + GE DL+E
Sbjct: 2078 KMVQGVLQFAVCDTAAAGQLVKDGVTQVVVSEEGAVHMVAGEGAQIIMQEAQGEHMDLVE 2137
Query: 111 VEVAISRCVHVVDFQVAAVEVVQADLLGKTQHLVLVHGAPPVALEDAPKRGVGGVDIAGD 170
+ IS+ + + A V+ T H +L PP ++ ++ A
Sbjct: 2138 SDGEISQIIVTEELVQAMVQESSGGFSEGTTHYILTE-LPPGVQDEPGLYSHTVLETADS 2196
Query: 171 ERL---GLLLAIQADGPVLRPHLGATIPPVGRERAAQQGAIAAAGVKVQRAGAEGQ 223
+ L G L +A P L + + Q+G+ AAA ++ QR +E Q
Sbjct: 2197 QELLQAGATLGTEAGAPSRAEQLASVVI------YTQEGSSAAAAIQSQRESSELQ 2246
>gi|239755402 PREDICTED: hypothetical protein [Homo sapiens]
Length = 321
Score = 31.2 bits (69), Expect = 0.91
Identities = 32/102 (31%), Positives = 39/102 (38%), Gaps = 29/102 (28%)
Query: 20 GVRQRPVGAEVPRQVADLARVELEGSHGVARAQPPQVSLEPVA----------------- 62
GVR VG EVP+QV D+ R +G H Q + + P A
Sbjct: 49 GVRVDGVGVEVPQQVEDVQRQPADGEHHHDHHQQAEGAPAPSAVPEDDQQREQVGDQQQP 108
Query: 63 -GLWLALHALAEARRVVVDKRVHPERDAEAGVAQAAEHVAGV 103
G+ LAL L PE AEA V + HV GV
Sbjct: 109 PGVELALALLGA-----------PELLAEAHVVRLELHVIGV 139
>gi|239749910 PREDICTED: hypothetical protein XP_002347211 [Homo
sapiens]
Length = 321
Score = 31.2 bits (69), Expect = 0.91
Identities = 32/102 (31%), Positives = 39/102 (38%), Gaps = 29/102 (28%)
Query: 20 GVRQRPVGAEVPRQVADLARVELEGSHGVARAQPPQVSLEPVA----------------- 62
GVR VG EVP+QV D+ R +G H Q + + P A
Sbjct: 49 GVRVDGVGVEVPQQVEDVQRQPADGEHHHDHHQQAEGAPAPSAVPEDDQQREQVGDQQQP 108
Query: 63 -GLWLALHALAEARRVVVDKRVHPERDAEAGVAQAAEHVAGV 103
G+ LAL L PE AEA V + HV GV
Sbjct: 109 PGVELALALLGA-----------PELLAEAHVVRLELHVIGV 139
>gi|239744211 PREDICTED: hypothetical protein XP_002343075 [Homo
sapiens]
Length = 321
Score = 31.2 bits (69), Expect = 0.91
Identities = 32/102 (31%), Positives = 39/102 (38%), Gaps = 29/102 (28%)
Query: 20 GVRQRPVGAEVPRQVADLARVELEGSHGVARAQPPQVSLEPVA----------------- 62
GVR VG EVP+QV D+ R +G H Q + + P A
Sbjct: 49 GVRVDGVGVEVPQQVEDVQRQPADGEHHHDHHQQAEGAPAPSAVPEDDQQREQVGDQQQP 108
Query: 63 -GLWLALHALAEARRVVVDKRVHPERDAEAGVAQAAEHVAGV 103
G+ LAL L PE AEA V + HV GV
Sbjct: 109 PGVELALALLGA-----------PELLAEAHVVRLELHVIGV 139
>gi|62988346 glutamate receptor, ionotropic, N-methyl-D-aspartate 3B
[Homo sapiens]
Length = 1043
Score = 30.4 bits (67), Expect = 1.5
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 16/90 (17%)
Query: 11 LSVAPAPDAGVRQR------PVGAEVPRQVADLARVELEGSHGVARAQPP---------- 54
LS DAG+R R PVG E P A L ++ + V A PP
Sbjct: 205 LSRRDTGDAGLRARLAPMAAPVGGEAPVPAAVLLGCDIARARRVLEAVPPGPHWLLGTPL 264
Query: 55 QVSLEPVAGLWLALHALAEARRVVVDKRVH 84
P AGL L AL E R ++ +H
Sbjct: 265 PPKALPTAGLPPGLLALGEVARPPLEAAIH 294
>gi|51173735 ras responsive element binding protein 1 isoform 2
[Homo sapiens]
Length = 1687
Score = 30.0 bits (66), Expect = 2.0
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 12/59 (20%)
Query: 9 RHLSVAP-------APDAGVRQRPVGAEVPRQVADLARVELEGSHGVARAQPPQVSLEP 60
+HLS+ P PD+ + +P+ E ++AD+ ++ +A + PPQ+SL P
Sbjct: 435 KHLSLQPFQKGFIIQPDSSIVVKPISGESAIELADIQQI-----LKMAASAPPQISLPP 488
>gi|51173737 ras responsive element binding protein 1 isoform 1
[Homo sapiens]
Length = 1742
Score = 30.0 bits (66), Expect = 2.0
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 12/59 (20%)
Query: 9 RHLSVAP-------APDAGVRQRPVGAEVPRQVADLARVELEGSHGVARAQPPQVSLEP 60
+HLS+ P PD+ + +P+ E ++AD+ ++ +A + PPQ+SL P
Sbjct: 435 KHLSLQPFQKGFIIQPDSSIVVKPISGESAIELADIQQI-----LKMAASAPPQISLPP 488
>gi|24429588 zinc finger protein 532 [Homo sapiens]
Length = 1301
Score = 30.0 bits (66), Expect = 2.0
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Query: 49 ARAQPPQVSLEPVAGLWLALHALAEARRVVVDKRVHPERDAEAGVAQAAEHVAGVGEFDL 108
A P QV+++PVA +L + A+ A V++ ++ +A V AA +
Sbjct: 436 AELTPKQVTIKPVATAFLPVSAVKTAGSQVINLKLANNTTVKATVISAA---------SV 486
Query: 109 IEVEVAISRCVHVVDFQ---VAAVEVVQADLLGKTQHLVLVHGAPPVALEDAPKRGV 162
AI + + + Q V A + A L+ KT HL ++ P A + R V
Sbjct: 487 QSASSAIIKAANAIQQQTVVVPASSLANAKLVPKTVHLANLNLLPQGAQATSELRQV 543
>gi|31542747 catechol-O-methyltransferase domain containing 1 [Homo
sapiens]
Length = 262
Score = 30.0 bits (66), Expect = 2.0
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 169 GDERLGLLLAIQADGPVLRPHLGATIPPVGRERAAQQGAIAAAGVKVQRAGAEGQAEDLL 228
G L L LA+ ADG V+ + A P +GR Q A ++++ A + L
Sbjct: 114 GYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK------PALETL 167
Query: 229 SLLIADGEAASFQV 242
L+A GEA +F V
Sbjct: 168 DELLAAGEAGTFDV 181
>gi|27881501 ATP-binding cassette, sub-family A, member 12 isoform b
[Homo sapiens]
Length = 2277
Score = 29.6 bits (65), Expect = 2.6
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 85 PERDAEAGVAQAAEH------VAGVGEFDLIEVEVAISRCVHVVDFQVAAVEVVQADLLG 138
P+ DA + EH V G+ E D+ E + R +H++ F+ A +
Sbjct: 2019 PQEDALDDLVTVEEHLYFYARVHGIPEKDIKETVHKLLRRLHLMPFKDRATSMCSYGTKR 2078
Query: 139 KTQHLVLVHGAPPVALEDAPKRGV 162
K + + G P + L D P G+
Sbjct: 2079 KLSTALALIGKPSILLLDEPSSGM 2102
>gi|30795238 ATP-binding cassette, sub-family A, member 12 isoform a
[Homo sapiens]
Length = 2595
Score = 29.6 bits (65), Expect = 2.6
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 85 PERDAEAGVAQAAEH------VAGVGEFDLIEVEVAISRCVHVVDFQVAAVEVVQADLLG 138
P+ DA + EH V G+ E D+ E + R +H++ F+ A +
Sbjct: 2337 PQEDALDDLVTVEEHLYFYARVHGIPEKDIKETVHKLLRRLHLMPFKDRATSMCSYGTKR 2396
Query: 139 KTQHLVLVHGAPPVALEDAPKRGV 162
K + + G P + L D P G+
Sbjct: 2397 KLSTALALIGKPSILLLDEPSSGM 2420
>gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens]
Length = 2003
Score = 29.3 bits (64), Expect = 3.4
Identities = 56/219 (25%), Positives = 82/219 (37%), Gaps = 32/219 (14%)
Query: 28 AEVPRQVADLARVELEGSHGVARAQPPQVSLEPVAGLWLALHALAEARRVVVDKRVHPER 87
A V R V + R E EG ARA L AL EAR + +R +
Sbjct: 1487 AAVLRAVEERERAEAEGREREARA----------LSLTRALEEEQEAREEL--ERQNRAL 1534
Query: 88 DAEAGVAQAAEHVAGVGEFDLIEVEVAISRCVHVVDFQVAAVEVVQADLLGKTQHLVLVH 147
AE +++ G +L + + + QV +E D L + L
Sbjct: 1535 RAELEALLSSKDDVGKSVHELERACRVAEQAANDLRAQVTELE----DELTAAEDAKLRL 1590
Query: 148 GAPPVALEDAPKRGVGGVDIAGDERLGLLLAIQADGPVLRPHLGATIPPVGRERAAQQGA 207
AL+ +R + G D AG+ER L D V R ER + A
Sbjct: 1591 EVTVQALKTQHERDLQGRDEAGEERRRQLAKQLRDAEVERDE----------ERKQRTLA 1640
Query: 208 IAAAGVKVQRAGAEGQAEDLLSLLIADGEAASFQVQQLR 246
+AA R EG+ E+L + + + G+ V+QLR
Sbjct: 1641 VAA------RKKLEGELEELKAQMASAGQGKEEAVKQLR 1673
>gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens]
Length = 1995
Score = 29.3 bits (64), Expect = 3.4
Identities = 56/219 (25%), Positives = 82/219 (37%), Gaps = 32/219 (14%)
Query: 28 AEVPRQVADLARVELEGSHGVARAQPPQVSLEPVAGLWLALHALAEARRVVVDKRVHPER 87
A V R V + R E EG ARA L AL EAR + +R +
Sbjct: 1479 AAVLRAVEERERAEAEGREREARA----------LSLTRALEEEQEAREEL--ERQNRAL 1526
Query: 88 DAEAGVAQAAEHVAGVGEFDLIEVEVAISRCVHVVDFQVAAVEVVQADLLGKTQHLVLVH 147
AE +++ G +L + + + QV +E D L + L
Sbjct: 1527 RAELEALLSSKDDVGKSVHELERACRVAEQAANDLRAQVTELE----DELTAAEDAKLRL 1582
Query: 148 GAPPVALEDAPKRGVGGVDIAGDERLGLLLAIQADGPVLRPHLGATIPPVGRERAAQQGA 207
AL+ +R + G D AG+ER L D V R ER + A
Sbjct: 1583 EVTVQALKTQHERDLQGRDEAGEERRRQLAKQLRDAEVERDE----------ERKQRTLA 1632
Query: 208 IAAAGVKVQRAGAEGQAEDLLSLLIADGEAASFQVQQLR 246
+AA R EG+ E+L + + + G+ V+QLR
Sbjct: 1633 VAA------RKKLEGELEELKAQMASAGQGKEEAVKQLR 1665
>gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens]
Length = 2036
Score = 29.3 bits (64), Expect = 3.4
Identities = 56/219 (25%), Positives = 82/219 (37%), Gaps = 32/219 (14%)
Query: 28 AEVPRQVADLARVELEGSHGVARAQPPQVSLEPVAGLWLALHALAEARRVVVDKRVHPER 87
A V R V + R E EG ARA L AL EAR + +R +
Sbjct: 1520 AAVLRAVEERERAEAEGREREARA----------LSLTRALEEEQEAREEL--ERQNRAL 1567
Query: 88 DAEAGVAQAAEHVAGVGEFDLIEVEVAISRCVHVVDFQVAAVEVVQADLLGKTQHLVLVH 147
AE +++ G +L + + + QV +E D L + L
Sbjct: 1568 RAELEALLSSKDDVGKSVHELERACRVAEQAANDLRAQVTELE----DELTAAEDAKLRL 1623
Query: 148 GAPPVALEDAPKRGVGGVDIAGDERLGLLLAIQADGPVLRPHLGATIPPVGRERAAQQGA 207
AL+ +R + G D AG+ER L D V R ER + A
Sbjct: 1624 EVTVQALKTQHERDLQGRDEAGEERRRQLAKQLRDAEVERDE----------ERKQRTLA 1673
Query: 208 IAAAGVKVQRAGAEGQAEDLLSLLIADGEAASFQVQQLR 246
+AA R EG+ E+L + + + G+ V+QLR
Sbjct: 1674 VAA------RKKLEGELEELKAQMASAGQGKEEAVKQLR 1706
>gi|189181759 electron transfer flavoprotein, alpha polypeptide
isoform b [Homo sapiens]
Length = 284
Score = 28.5 bits (62), Expect = 5.9
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 18/83 (21%)
Query: 68 LHALAEARRVVVD--------------KRVHPERDAEAGVAQAAEHVAGVGEFDLIEVEV 113
LHA A R VD K V PE G++ A +H+AG+ + I V
Sbjct: 192 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTI---V 248
Query: 114 AISRCVHVVDFQVAAVEVVQADL 136
AI++ FQVA +V ADL
Sbjct: 249 AINKDPEAPIFQVADYGIV-ADL 270
>gi|4503607 electron transfer flavoprotein, alpha polypeptide
isoform a [Homo sapiens]
Length = 333
Score = 28.5 bits (62), Expect = 5.9
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 18/83 (21%)
Query: 68 LHALAEARRVVVD--------------KRVHPERDAEAGVAQAAEHVAGVGEFDLIEVEV 113
LHA A R VD K V PE G++ A +H+AG+ + I V
Sbjct: 241 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTI---V 297
Query: 114 AISRCVHVVDFQVAAVEVVQADL 136
AI++ FQVA +V ADL
Sbjct: 298 AINKDPEAPIFQVADYGIV-ADL 319
>gi|4502557 calcium/calmodulin-dependent protein kinase IV [Homo
sapiens]
Length = 473
Score = 28.5 bits (62), Expect = 5.9
Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 6/130 (4%)
Query: 23 QRPVGAEVPRQVADLARVELEGSHGVARAQPPQVSLEPV------AGLWLALHALAEARR 76
Q+P +V ++ D V E + + P + L+ + L L L E
Sbjct: 69 QKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGELFD 128
Query: 77 VVVDKRVHPERDAEAGVAQAAEHVAGVGEFDLIEVEVAISRCVHVVDFQVAAVEVVQADL 136
+V+K + ERDA V Q E VA + E ++ ++ ++ A +++ L
Sbjct: 129 RIVEKGYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGL 188
Query: 137 LGKTQHLVLV 146
+H VL+
Sbjct: 189 SKIVEHQVLM 198
>gi|239742988 PREDICTED: hypothetical protein [Homo sapiens]
Length = 470
Score = 28.1 bits (61), Expect = 7.7
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Query: 146 VHGAPPVALEDAPKRGVGGVDI-----AGDERLGLLLAIQADGPVL-----RPHLGATIP 195
+ GAP +A E+ KRGVG ++ G+ + I A G L R + A
Sbjct: 234 MQGAPSLAGEEEGKRGVGDAEVRHWGTLTSRASGMRVGIWAAGGGLAAAGERNSVRAVSF 293
Query: 196 PVGRERAAQQGAIAAAGVKVQRAGAEGQAEDLLSLLIADGEAASFQVQQLRAKSLRLA 253
GR ++ AA + V AG G DL + +AA+ Q A + R A
Sbjct: 294 SSGRVGVREE---AAGHLAVGAAGLTGAHADLALAQLLGADAAAAAAVQHEAHARRAA 348
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,113,546
Number of Sequences: 37866
Number of extensions: 386067
Number of successful extensions: 1171
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1167
Number of HSP's gapped (non-prelim): 20
length of query: 253
length of database: 18,247,518
effective HSP length: 100
effective length of query: 153
effective length of database: 14,460,918
effective search space: 2212520454
effective search space used: 2212520454
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.