Guide to the Human Genome
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Name: LOC100293345 Sequence: fasta or formatted (253aa) NCBI GI: 239755008
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.4         44           3
 C cysteine            0.4          1           1
 D aspartate           5.1         13           1
 E glutamate           7.9         20           2
 F phenylalanine       1.2          3           1
 G glycine             9.5         24           2
 H histidine           3.6          9           1
 I isoleucine          2.8          7           1
 K lysine              2.0          5           1
 L leucine            11.1         28           3
 M methionine          0.4          1           1
 N asparagine          0.0          0           0
 P proline             5.9         15           2
 Q glutamine           6.7         17           2
 R arginine            7.9         20           2
 S serine              2.8          7           1
 T threonine           1.2          3           1
 V valine             13.8         35           3
 W tryptophan          0.4          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131774          0.017   PREDICTED: hypothetical protein 
ZNF407                0.015   zinc finger protein 407 isoform 1 
LOC100292515          0.013   PREDICTED: hypothetical protein 
LOC100289910          0.013   PREDICTED: hypothetical protein XP_002347211 
LOC100287264          0.013   PREDICTED: hypothetical protein XP_002343075 
GRIN3B                0.011   glutamate receptor, ionotropic, N-methyl-D-aspartate...
RREB1                 0.011   ras responsive element binding protein 1 isoform 2 [...
RREB1                 0.011   ras responsive element binding protein 1 isoform 1 [...
ZNF532                0.011   zinc finger protein 532 
COMTD1                0.011   catechol-O-methyltransferase domain containing 1 [Ho...
ABCA12                0.011   ATP-binding cassette, sub-family A, member 12 isofor...
ABCA12                0.011   ATP-binding cassette, sub-family A, member 12 isofor...
MYH14                 0.009   myosin, heavy chain 14 isoform 1 
MYH14                 0.009   myosin, heavy chain 14 isoform 2 
MYH14                 0.009   myosin, heavy chain 14 isoform 3 
ETFA                  0.007   electron transfer flavoprotein, alpha polypeptide i...
ETFA                  0.007   electron transfer flavoprotein, alpha polypeptide iso...
CAMK4                 0.007   calcium/calmodulin-dependent protein kinase IV 
LOC100131774          0.007   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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