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Search of human proteins with 239754795
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754795 PREDICTED: similar to PL-5283 protein [Homo
sapiens]
(63 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754795 PREDICTED: similar to PL-5283 protein [Homo sapiens] 132 6e-32
gi|239754565 PREDICTED: similar to PL-5283 protein [Homo sapiens] 51 2e-07
gi|239749163 PREDICTED: hypothetical protein XP_002346927 [Homo ... 51 2e-07
gi|239743160 PREDICTED: hypothetical protein XP_002342763 [Homo ... 51 2e-07
gi|239508820 PREDICTED: similar to PL-5283 protein [Homo sapiens] 51 2e-07
gi|239753395 PREDICTED: similar to PL-5283 protein [Homo sapiens] 49 9e-07
gi|239747966 PREDICTED: hypothetical protein XP_002346486 [Homo ... 49 9e-07
gi|239741861 PREDICTED: hypothetical protein XP_002342342 [Homo ... 49 9e-07
gi|195963435 PL-5283 protein [Homo sapiens] 49 9e-07
gi|239754094 PREDICTED: similar to PL-5283 protein [Homo sapiens] 31 0.24
gi|239748655 PREDICTED: hypothetical protein XP_002346769 [Homo ... 31 0.24
gi|239742680 PREDICTED: hypothetical protein XP_002342594 [Homo ... 31 0.24
gi|34147416 breast cancer metastasis-suppressor 1-like [Homo sap... 28 1.2
gi|169202895 PREDICTED: similar to solute carrier family 22, mem... 27 3.5
gi|239750073 PREDICTED: similar to solute carrier family 22, mem... 27 3.5
gi|239744382 PREDICTED: hypothetical protein XP_002343132 [Homo ... 27 3.5
gi|42542386 solute carrier family 22 (organic anion/cation trans... 27 3.5
gi|4504593 interferon, alpha 16 [Homo sapiens] 27 4.6
gi|221316624 dystonin isoform 4 [Homo sapiens] 26 6.0
gi|221316622 dystonin isoform 3 [Homo sapiens] 26 6.0
gi|221316618 dystonin isoform 2 [Homo sapiens] 26 6.0
gi|34577047 dystonin isoform 1 [Homo sapiens] 26 6.0
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] 26 6.0
gi|123701326 zinc finger protein 831 [Homo sapiens] 26 6.0
gi|33356142 hypothetical protein LOC203197 [Homo sapiens] 26 7.8
>gi|239754795 PREDICTED: similar to PL-5283 protein [Homo sapiens]
Length = 63
Score = 132 bits (332), Expect = 6e-32
Identities = 63/63 (100%), Positives = 63/63 (100%)
Query: 1 MLQSLLEFAPGNGVEIHLVQNDSISNLSKQFADIKKDLYAKKEAPSSWGQPQFAFRIYSF 60
MLQSLLEFAPGNGVEIHLVQNDSISNLSKQFADIKKDLYAKKEAPSSWGQPQFAFRIYSF
Sbjct: 1 MLQSLLEFAPGNGVEIHLVQNDSISNLSKQFADIKKDLYAKKEAPSSWGQPQFAFRIYSF 60
Query: 61 CCR 63
CCR
Sbjct: 61 CCR 63
>gi|239754565 PREDICTED: similar to PL-5283 protein [Homo sapiens]
Length = 47
Score = 51.2 bits (121), Expect = 2e-07
Identities = 28/47 (59%), Positives = 33/47 (70%)
Query: 1 MLQSLLEFAPGNGVEIHLVQNDSISNLSKQFADIKKDLYAKKEAPSS 47
MLQ LL F GN V I+L QN I NL+K+ +IKKDL AKK+ PSS
Sbjct: 1 MLQFLLGFTLGNVVGIYLAQNYDIPNLAKKLEEIKKDLDAKKKLPSS 47
>gi|239749163 PREDICTED: hypothetical protein XP_002346927 [Homo
sapiens]
Length = 47
Score = 51.2 bits (121), Expect = 2e-07
Identities = 28/47 (59%), Positives = 33/47 (70%)
Query: 1 MLQSLLEFAPGNGVEIHLVQNDSISNLSKQFADIKKDLYAKKEAPSS 47
MLQ LL F GN V I+L QN I NL+K+ +IKKDL AKK+ PSS
Sbjct: 1 MLQFLLGFTLGNVVGIYLAQNYDIPNLAKKLEEIKKDLDAKKKLPSS 47
>gi|239743160 PREDICTED: hypothetical protein XP_002342763 [Homo
sapiens]
Length = 47
Score = 51.2 bits (121), Expect = 2e-07
Identities = 28/47 (59%), Positives = 33/47 (70%)
Query: 1 MLQSLLEFAPGNGVEIHLVQNDSISNLSKQFADIKKDLYAKKEAPSS 47
MLQ LL F GN V I+L QN I NL+K+ +IKKDL AKK+ PSS
Sbjct: 1 MLQFLLGFTLGNVVGIYLAQNYDIPNLAKKLEEIKKDLDAKKKLPSS 47
>gi|239508820 PREDICTED: similar to PL-5283 protein [Homo sapiens]
Length = 47
Score = 51.2 bits (121), Expect = 2e-07
Identities = 28/47 (59%), Positives = 33/47 (70%)
Query: 1 MLQSLLEFAPGNGVEIHLVQNDSISNLSKQFADIKKDLYAKKEAPSS 47
MLQ LL F GN V I+L QN I NL+K+ +IKKDL AKK+ PSS
Sbjct: 1 MLQFLLGFTLGNVVGIYLAQNYDIPNLAKKLEEIKKDLDAKKKLPSS 47
>gi|239753395 PREDICTED: similar to PL-5283 protein [Homo sapiens]
Length = 47
Score = 48.9 bits (115), Expect = 9e-07
Identities = 26/47 (55%), Positives = 33/47 (70%)
Query: 1 MLQSLLEFAPGNGVEIHLVQNDSISNLSKQFADIKKDLYAKKEAPSS 47
MLQ LL F GN V ++L QN I NL+K+ +IKKDL AKK+ P+S
Sbjct: 1 MLQFLLGFTLGNVVGMYLAQNYDIPNLAKKLEEIKKDLDAKKKPPTS 47
>gi|239747966 PREDICTED: hypothetical protein XP_002346486 [Homo
sapiens]
Length = 47
Score = 48.9 bits (115), Expect = 9e-07
Identities = 26/47 (55%), Positives = 33/47 (70%)
Query: 1 MLQSLLEFAPGNGVEIHLVQNDSISNLSKQFADIKKDLYAKKEAPSS 47
MLQ LL F GN V ++L QN I NL+K+ +IKKDL AKK+ P+S
Sbjct: 1 MLQFLLGFTLGNVVGMYLAQNYDIPNLAKKLEEIKKDLDAKKKPPTS 47
>gi|239741861 PREDICTED: hypothetical protein XP_002342342 [Homo
sapiens]
Length = 47
Score = 48.9 bits (115), Expect = 9e-07
Identities = 26/47 (55%), Positives = 33/47 (70%)
Query: 1 MLQSLLEFAPGNGVEIHLVQNDSISNLSKQFADIKKDLYAKKEAPSS 47
MLQ LL F GN V ++L QN I NL+K+ +IKKDL AKK+ P+S
Sbjct: 1 MLQFLLGFTLGNVVGMYLAQNYDIPNLAKKLEEIKKDLDAKKKPPTS 47
>gi|195963435 PL-5283 protein [Homo sapiens]
Length = 47
Score = 48.9 bits (115), Expect = 9e-07
Identities = 26/47 (55%), Positives = 33/47 (70%)
Query: 1 MLQSLLEFAPGNGVEIHLVQNDSISNLSKQFADIKKDLYAKKEAPSS 47
MLQ LL F GN V ++L QN I NL+K+ +IKKDL AKK+ PS+
Sbjct: 1 MLQFLLGFTLGNVVGMYLAQNYDIPNLAKKLEEIKKDLDAKKKPPSA 47
>gi|239754094 PREDICTED: similar to PL-5283 protein [Homo sapiens]
Length = 43
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 1 MLQSLLEFAPGNGVEIHLVQNDSISNLSKQFADIKKDLY-AKKEAPSS 47
MLQ LL F N V ++L QN NL+K KKDL +K+ PSS
Sbjct: 1 MLQLLLGFTLANMVGMYLAQNYDAPNLAK-----KKDLMPGRKKPPSS 43
>gi|239748655 PREDICTED: hypothetical protein XP_002346769 [Homo
sapiens]
Length = 43
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 1 MLQSLLEFAPGNGVEIHLVQNDSISNLSKQFADIKKDLY-AKKEAPSS 47
MLQ LL F N V ++L QN NL+K KKDL +K+ PSS
Sbjct: 1 MLQLLLGFTLANMVGMYLAQNYDAPNLAK-----KKDLMPGRKKPPSS 43
>gi|239742680 PREDICTED: hypothetical protein XP_002342594 [Homo
sapiens]
Length = 43
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 1 MLQSLLEFAPGNGVEIHLVQNDSISNLSKQFADIKKDLY-AKKEAPSS 47
MLQ LL F N V ++L QN NL+K KKDL +K+ PSS
Sbjct: 1 MLQLLLGFTLANMVGMYLAQNYDAPNLAK-----KKDLMPGRKKPPSS 43
>gi|34147416 breast cancer metastasis-suppressor 1-like [Homo
sapiens]
Length = 323
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 22 DSISNLSKQFADIKKDLYAKK 42
D +SNL KQF D+K LY ++
Sbjct: 63 DEMSNLEKQFTDLKDQLYKER 83
>gi|169202895 PREDICTED: similar to solute carrier family 22,
member 24 [Homo sapiens]
Length = 139
Score = 26.9 bits (58), Expect = 3.5
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 1 MLQSLLEFAPGNGVEIHLVQNDSISN 26
+L++ + F PG+ +H++ ND++S+
Sbjct: 36 LLENFIAFIPGHHYWVHILDNDTVSD 61
>gi|239750073 PREDICTED: similar to solute carrier family 22,
member 24 [Homo sapiens]
Length = 139
Score = 26.9 bits (58), Expect = 3.5
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 1 MLQSLLEFAPGNGVEIHLVQNDSISN 26
+L++ + F PG+ +H++ ND++S+
Sbjct: 36 LLENFIAFIPGHHYWVHILDNDTVSD 61
>gi|239744382 PREDICTED: hypothetical protein XP_002343132 [Homo
sapiens]
Length = 139
Score = 26.9 bits (58), Expect = 3.5
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 1 MLQSLLEFAPGNGVEIHLVQNDSISN 26
+L++ + F PG+ +H++ ND++S+
Sbjct: 36 LLENFIAFIPGHHYWVHILDNDTVSD 61
>gi|42542386 solute carrier family 22 (organic anion/cation
transporter), member 9 [Homo sapiens]
Length = 553
Score = 26.9 bits (58), Expect = 3.5
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 1 MLQSLLEFAPGNGVEIHLVQNDSISN 26
ML++ F PG+ +H++ ND++S+
Sbjct: 36 MLENFTAFIPGHRCWVHILDNDTVSD 61
>gi|4504593 interferon, alpha 16 [Homo sapiens]
Length = 189
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 15 EIHLVQNDSISNLSKQFADIKKDLYAKKEAPSSW 48
EI L+ DSI + K F I L KK +P +W
Sbjct: 131 EIALMNEDSILAVRKYFQRITLYLMGKKYSPCAW 164
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 22 DSISNLSKQFADIKKDLYAKKEAPSSWGQPQFAFRI 57
+ +NLSK+F +++ + KKEA +S + AF++
Sbjct: 2287 EKTNNLSKKFKEMEDTIKEKKEAVTSCQEQLDAFQV 2322
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 22 DSISNLSKQFADIKKDLYAKKEAPSSWGQPQFAFRI 57
+ +NLSK+F +++ + KKEA +S + AF++
Sbjct: 2298 EKTNNLSKKFKEMEDTIKEKKEAVTSCQEQLDAFQV 2333
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 22 DSISNLSKQFADIKKDLYAKKEAPSSWGQPQFAFRI 57
+ +NLSK+F +++ + KKEA +S + AF++
Sbjct: 2436 EKTNNLSKKFKEMEDTIKEKKEAVTSCQEQLDAFQV 2471
>gi|34577047 dystonin isoform 1 [Homo sapiens]
Length = 5497
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 22 DSISNLSKQFADIKKDLYAKKEAPSSWGQPQFAFRI 57
+ +NLSK+F +++ + KKEA +S + AF++
Sbjct: 2258 EKTNNLSKKFKEMEDTIKEKKEAVTSCQEQLDAFQV 2293
>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
Length = 5171
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 22 DSISNLSKQFADIKKDLYAKKEAPSSWGQPQFAFRI 57
+ +NLSK+F +++ + KKEA +S + AF++
Sbjct: 1932 EKTNNLSKKFKEMEDTIKEKKEAVTSCQEQLDAFQV 1967
>gi|123701326 zinc finger protein 831 [Homo sapiens]
Length = 1677
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 10 PGNGVEIHLVQNDSISNLSKQFADIKKDLYAKKEAPSSWG 49
PG G+++ L++ +++ D K +++ + PSS+G
Sbjct: 1437 PGKGLDLGLLETQLLASQDSVSTDPKPYIFSDAQRPSSFG 1476
>gi|33356142 hypothetical protein LOC203197 [Homo sapiens]
Length = 342
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 10 PGNGVEIHLVQNDSISNLSKQFADIKKDLYAKKEAPSSWG 49
PG G E+H Q ++ + A I DL A +E +WG
Sbjct: 31 PGWGQELHNGQVLTVLRIDNTCAPISFDLGAAEEQLQTWG 70
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,425,445
Number of Sequences: 37866
Number of extensions: 75602
Number of successful extensions: 212
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 25
length of query: 63
length of database: 18,247,518
effective HSP length: 36
effective length of query: 27
effective length of database: 16,884,342
effective search space: 455877234
effective search space used: 455877234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.