Guide to the Human Genome
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Name: LOC100288556 Sequence: fasta or formatted (43aa) NCBI GI: 239742680
Description:

PREDICTED: hypothetical protein XP_002342594

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3          4           1
 C cysteine            0.0          0           0
 D aspartate           4.7          2           1
 E glutamate           0.0          0           0
 F phenylalanine       2.3          1           1
 G glycine             7.0          3           1
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine             11.6          5           3
 L leucine            18.6          8           3
 M methionine          9.3          4           1
 N asparagine          7.0          3           1
 P proline             9.3          4           2
 Q glutamine           4.7          2           1
 R arginine            2.3          1           1
 S serine              4.7          2           2
 T threonine           2.3          1           1
 V valine              2.3          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            4.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342594 
LOC100293154          1.000   PREDICTED: similar to PL-5283 protein 
LOC100290840          1.000   PREDICTED: hypothetical protein XP_002346769 
LOC100291819          0.585   PREDICTED: similar to PL-5283 protein 
LOC100289832          0.585   PREDICTED: hypothetical protein XP_002346486 
LOC100287425          0.585   PREDICTED: hypothetical protein XP_002342342 
PL-5283               0.585   PL-5283 protein 
LOC100292395          0.523   PREDICTED: similar to PL-5283 protein 
LOC100290490          0.523   PREDICTED: hypothetical protein XP_002346927 
LOC100289196          0.523   PREDICTED: hypothetical protein XP_002342763 
LOC100289196          0.523   PREDICTED: similar to PL-5283 protein 
LOC100293446          0.092   PREDICTED: similar to PL-5283 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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