Guide to the Human Genome
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Name: C2CD2 Sequence: fasta or formatted (696aa) NCBI GI: 119226222
Description:

C2 calcium-dependent domain containing 2 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {541aa} C2 calcium-dependent domain containing 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         68           3
 C cysteine            1.3          9           1
 D aspartate           4.0         28           1
 E glutamate           7.6         53           3
 F phenylalanine       2.3         16           2
 G glycine             5.3         37           2
 H histidine           2.2         15           1
 I isoleucine          3.4         24           3
 K lysine              6.3         44           2
 L leucine            10.8         75           3
 M methionine          1.9         13           1
 N asparagine          2.0         14           1
 P proline             7.3         51           3
 Q glutamine           5.2         36           2
 R arginine            4.7         33           3
 S serine             10.9         76           3
 T threonine           5.2         36           2
 V valine              7.5         52           3
 W tryptophan          1.7         12           1
 Y tyrosine            0.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   C2 calcium-dependent domain containing 2 isoform 1 ... 
C2CD2                 0.771   C2 calcium-dependent domain containing 2 isoform 2 [...
C2CD2L                0.193   transmembrane protein 24 
MLLT3                 0.013   myeloid/lymphoid or mixed-lineage leukemia (trithor...
NFRKB                 0.009   nuclear factor related to kappaB binding protein is...
NFRKB                 0.009   nuclear factor related to kappaB binding protein iso...
FAM123A               0.009   hypothetical protein LOC219287 isoform 2 
FAM123A               0.009   hypothetical protein LOC219287 isoform 1 
MUC17                 0.008   mucin 17 
NEFH                  0.007   neurofilament, heavy polypeptide 200kDa 
RGS3                  0.007   regulator of G-protein signalling 3 isoform 6 [Homo...
RGS3                  0.007   regulator of G-protein signalling 3 isoform 2 
RGS3                  0.007   regulator of G-protein signalling 3 isoform 1 
KIAA1217              0.007   sickle tail isoform 3 
KIAA1217              0.007   sickle tail isoform 2 
MAP1B                 0.007   microtubule-associated protein 1B 
BRD2                  0.007   bromodomain containing 2 
BRD2                  0.007   bromodomain containing 2 
UBN1                  0.006   ubinuclein 1 
UBN1                  0.006   ubinuclein 1 
NOLC1                 0.006   nucleolar and coiled-body phosphoprotein 1 
ANK2                  0.006   ankyrin 2 isoform 1 
SETD1B                0.006   SET domain containing 1B 
FSCB                  0.006   fibrous sheath CABYR binding protein 
MUC12                 0.006   PREDICTED: mucin 12 
ZNF653                0.006   zinc finger protein 653 
RIMBP3B               0.006   RIMS binding protein 3B 
RIMBP3C               0.006   RIMS binding protein 3C 
TET3                  0.006   tet oncogene family member 3 
KIAA1462              0.006   hypothetical protein LOC57608 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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