Guide to the Human Genome
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Name: LOC100292433 Sequence: fasta or formatted (95aa) NCBI GI: 239754357
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         10           2
 C cysteine            3.2          3           1
 D aspartate           2.1          2           1
 E glutamate           0.0          0           0
 F phenylalanine       3.2          3           1
 G glycine             5.3          5           1
 H histidine           3.2          3           1
 I isoleucine          4.2          4           1
 K lysine              2.1          2           1
 L leucine             9.5          9           2
 M methionine          2.1          2           1
 N asparagine          5.3          5           1
 P proline            10.5         10           2
 Q glutamine           1.1          1           1
 R arginine           11.6         11           3
 S serine             11.6         11           2
 T threonine           2.1          2           1
 V valine              8.4          8           2
 W tryptophan          2.1          2           1
 Y tyrosine            2.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289773          1.000   PREDICTED: hypothetical protein XP_002346851 
LOC100289483          1.000   PREDICTED: hypothetical protein XP_002342688 
ATXN2                 0.029   ataxin 2 
GAL3ST3               0.023   galactose-3-O-sulfotransferase 3 
LOC100129571          0.017   PREDICTED: similar to hCG1646049 
LOC100129571          0.017   PREDICTED: similar to hCG1646049 
LOC100129571          0.017   PREDICTED: similar to hCG1646049 
SEMA6B                0.011   semaphorin 6B precursor 
CNOT4                 0.011   CCR4-NOT transcription complex, subunit 4 isoform a ...
ZMYM4                 0.011   zinc finger protein 262 
KDM5B                 0.006   jumonji, AT rich interactive domain 1B 
LOC100133760          0.006   PREDICTED: similar to Jumonji, AT rich interactive ...
LOC100290859          0.006   PREDICTED: hypothetical protein XP_002346523 
LOC100288572          0.006   PREDICTED: hypothetical protein XP_002342361 
TET1                  0.006   CXXC finger 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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